Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS17030 and DDA3937_RS17035 are separated by 271 nucleotides DDA3937_RS17035 and DDA3937_RS17040 are separated by 68 nucleotides DDA3937_RS17040 and DDA3937_RS17045 are separated by 70 nucleotides
DDA3937_RS17030: DDA3937_RS17030 - glycerate kinase, at 3,877,541 to 3,878,683
_RS17030
DDA3937_RS17035: DDA3937_RS17035 - 2-hydroxy-3-oxopropionate reductase, at 3,878,955 to 3,879,845
_RS17035
DDA3937_RS17040: DDA3937_RS17040 - 2-dehydro-3-deoxyglucarate aldolase, at 3,879,914 to 3,880,684
_RS17040
DDA3937_RS17045: DDA3937_RS17045 - glucarate dehydratase, at 3,880,755 to 3,882,095
_RS17045
Position (kb)
3878
3879
3880 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3878.574 kb on - strand at 3878.675 kb on + strand at 3878.683 kb on + strand at 3878.704 kb on + strand at 3878.705 kb on - strand at 3878.716 kb on - strand at 3878.750 kb on + strand at 3878.750 kb on + strand at 3878.751 kb on - strand at 3878.751 kb on - strand at 3878.810 kb on + strand at 3878.956 kb on + strand at 3878.957 kb on - strand at 3878.964 kb on - strand at 3878.964 kb on - strand at 3878.993 kb on - strand at 3878.993 kb on - strand at 3879.104 kb on + strand, within DDA3937_RS17035 at 3879.105 kb on - strand, within DDA3937_RS17035 at 3879.105 kb on - strand, within DDA3937_RS17035 at 3879.131 kb on + strand, within DDA3937_RS17035 at 3879.158 kb on + strand, within DDA3937_RS17035 at 3879.158 kb on + strand, within DDA3937_RS17035 at 3879.158 kb on + strand, within DDA3937_RS17035 at 3879.207 kb on - strand, within DDA3937_RS17035 at 3879.207 kb on - strand, within DDA3937_RS17035 at 3879.207 kb on - strand, within DDA3937_RS17035 at 3879.207 kb on - strand, within DDA3937_RS17035 at 3879.235 kb on + strand, within DDA3937_RS17035 at 3879.235 kb on + strand, within DDA3937_RS17035 at 3879.236 kb on - strand, within DDA3937_RS17035 at 3879.236 kb on - strand, within DDA3937_RS17035 at 3879.400 kb on + strand, within DDA3937_RS17035 at 3879.400 kb on + strand, within DDA3937_RS17035 at 3879.400 kb on + strand, within DDA3937_RS17035 at 3879.401 kb on - strand, within DDA3937_RS17035 at 3879.401 kb on - strand, within DDA3937_RS17035 at 3879.401 kb on - strand, within DDA3937_RS17035 at 3879.497 kb on + strand, within DDA3937_RS17035 at 3879.497 kb on + strand, within DDA3937_RS17035 at 3879.497 kb on + strand, within DDA3937_RS17035 at 3879.497 kb on + strand, within DDA3937_RS17035 at 3879.498 kb on - strand, within DDA3937_RS17035 at 3879.498 kb on - strand, within DDA3937_RS17035 at 3879.498 kb on - strand, within DDA3937_RS17035 at 3879.498 kb on - strand, within DDA3937_RS17035 at 3879.498 kb on - strand, within DDA3937_RS17035 at 3879.630 kb on + strand, within DDA3937_RS17035 at 3879.630 kb on + strand, within DDA3937_RS17035 at 3879.630 kb on + strand, within DDA3937_RS17035 at 3879.631 kb on - strand, within DDA3937_RS17035 at 3879.631 kb on - strand, within DDA3937_RS17035 at 3879.631 kb on - strand, within DDA3937_RS17035 at 3879.656 kb on + strand at 3879.656 kb on + strand, within DDA3937_RS17035 at 3879.656 kb on + strand, within DDA3937_RS17035 at 3879.657 kb on - strand, within DDA3937_RS17035 at 3879.657 kb on - strand, within DDA3937_RS17035 at 3879.657 kb on - strand, within DDA3937_RS17035 at 3879.657 kb on - strand, within DDA3937_RS17035 at 3879.813 kb on - strand at 3879.824 kb on + strand at 3879.824 kb on + strand at 3879.825 kb on - strand at 3879.825 kb on - strand at 3879.825 kb on - strand at 3879.825 kb on - strand at 3879.878 kb on + strand at 3879.878 kb on + strand at 3879.878 kb on + strand at 3879.879 kb on - strand at 3879.879 kb on - strand at 3879.879 kb on - strand at 3879.879 kb on - strand at 3879.879 kb on - strand at 3879.879 kb on - strand at 3879.905 kb on + strand at 3879.906 kb on - strand at 3879.915 kb on + strand at 3879.916 kb on - strand at 3879.916 kb on - strand at 3879.916 kb on - strand at 3879.923 kb on - strand at 3880.055 kb on - strand, within DDA3937_RS17040 at 3880.129 kb on - strand, within DDA3937_RS17040 at 3880.272 kb on + strand, within DDA3937_RS17040 at 3880.273 kb on - strand, within DDA3937_RS17040 at 3880.273 kb on - strand, within DDA3937_RS17040 at 3880.291 kb on - strand, within DDA3937_RS17040 at 3880.407 kb on + strand, within DDA3937_RS17040 at 3880.407 kb on + strand, within DDA3937_RS17040 at 3880.408 kb on - strand, within DDA3937_RS17040 at 3880.450 kb on + strand, within DDA3937_RS17040 at 3880.511 kb on - strand, within DDA3937_RS17040 at 3880.511 kb on - strand, within DDA3937_RS17040 at 3880.511 kb on - strand, within DDA3937_RS17040 at 3880.580 kb on + strand, within DDA3937_RS17040 at 3880.580 kb on + strand, within DDA3937_RS17040 at 3880.581 kb on - strand, within DDA3937_RS17040 at 3880.600 kb on + strand, within DDA3937_RS17040 at 3880.644 kb on - strand at 3880.695 kb on + strand at 3880.696 kb on - strand at 3880.696 kb on - strand at 3880.702 kb on + strand at 3880.702 kb on + strand at 3880.703 kb on - strand at 3880.734 kb on + strand at 3880.735 kb on - strand at 3880.735 kb on - strand at 3880.739 kb on - strand at 3880.739 kb on - strand at 3880.778 kb on + strand at 3880.781 kb on + strand at 3880.807 kb on + strand at 3880.808 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,878,574 - -1.3 3,878,675 + -0.3 3,878,683 + -0.9 3,878,704 + +0.6 3,878,705 - -0.2 3,878,716 - -0.3 3,878,750 + +1.2 3,878,750 + -0.6 3,878,751 - -0.3 3,878,751 - -0.9 3,878,810 + +1.8 3,878,956 + +0.0 3,878,957 - +0.3 3,878,964 - -0.7 3,878,964 - -0.2 3,878,993 - +0.7 3,878,993 - +0.1 3,879,104 + DDA3937_RS17035 0.17 +1.4 3,879,105 - DDA3937_RS17035 0.17 -0.3 3,879,105 - DDA3937_RS17035 0.17 +0.7 3,879,131 + DDA3937_RS17035 0.20 -0.3 3,879,158 + DDA3937_RS17035 0.23 +1.4 3,879,158 + DDA3937_RS17035 0.23 +0.5 3,879,158 + DDA3937_RS17035 0.23 +1.4 3,879,207 - DDA3937_RS17035 0.28 -2.5 3,879,207 - DDA3937_RS17035 0.28 +0.3 3,879,207 - DDA3937_RS17035 0.28 -0.3 3,879,207 - DDA3937_RS17035 0.28 +0.4 3,879,235 + DDA3937_RS17035 0.31 -0.1 3,879,235 + DDA3937_RS17035 0.31 +0.9 3,879,236 - DDA3937_RS17035 0.32 +1.0 3,879,236 - DDA3937_RS17035 0.32 -0.0 3,879,400 + DDA3937_RS17035 0.50 +1.5 3,879,400 + DDA3937_RS17035 0.50 +0.6 3,879,400 + DDA3937_RS17035 0.50 -0.9 3,879,401 - DDA3937_RS17035 0.50 -0.0 3,879,401 - DDA3937_RS17035 0.50 -1.6 3,879,401 - DDA3937_RS17035 0.50 +0.7 3,879,497 + DDA3937_RS17035 0.61 -0.3 3,879,497 + DDA3937_RS17035 0.61 +0.5 3,879,497 + DDA3937_RS17035 0.61 +0.8 3,879,497 + DDA3937_RS17035 0.61 +0.4 3,879,498 - DDA3937_RS17035 0.61 -0.2 3,879,498 - DDA3937_RS17035 0.61 +0.1 3,879,498 - DDA3937_RS17035 0.61 -1.6 3,879,498 - DDA3937_RS17035 0.61 -0.5 3,879,498 - DDA3937_RS17035 0.61 -0.3 3,879,630 + DDA3937_RS17035 0.76 +0.1 3,879,630 + DDA3937_RS17035 0.76 +0.9 3,879,630 + DDA3937_RS17035 0.76 +2.3 3,879,631 - DDA3937_RS17035 0.76 +0.0 3,879,631 - DDA3937_RS17035 0.76 -0.8 3,879,631 - DDA3937_RS17035 0.76 +0.4 3,879,656 + +2.4 3,879,656 + DDA3937_RS17035 0.79 -0.0 3,879,656 + DDA3937_RS17035 0.79 +1.9 3,879,657 - DDA3937_RS17035 0.79 -0.1 3,879,657 - DDA3937_RS17035 0.79 -0.6 3,879,657 - DDA3937_RS17035 0.79 -0.5 3,879,657 - DDA3937_RS17035 0.79 +0.2 3,879,813 - +0.1 3,879,824 + +0.7 3,879,824 + -0.3 3,879,825 - -0.3 3,879,825 - +0.6 3,879,825 - -0.1 3,879,825 - -0.9 3,879,878 + +0.7 3,879,878 + -0.1 3,879,878 + +0.7 3,879,879 - +0.7 3,879,879 - -1.4 3,879,879 - -0.6 3,879,879 - +0.5 3,879,879 - -1.6 3,879,879 - -0.4 3,879,905 + +0.5 3,879,906 - -1.3 3,879,915 + +0.8 3,879,916 - -0.2 3,879,916 - -0.0 3,879,916 - +0.0 3,879,923 - -0.0 3,880,055 - DDA3937_RS17040 0.18 -1.0 3,880,129 - DDA3937_RS17040 0.28 -0.4 3,880,272 + DDA3937_RS17040 0.46 -0.1 3,880,273 - DDA3937_RS17040 0.47 -0.8 3,880,273 - DDA3937_RS17040 0.47 -3.3 3,880,291 - DDA3937_RS17040 0.49 +0.2 3,880,407 + DDA3937_RS17040 0.64 +1.2 3,880,407 + DDA3937_RS17040 0.64 +1.3 3,880,408 - DDA3937_RS17040 0.64 +0.1 3,880,450 + DDA3937_RS17040 0.70 +0.1 3,880,511 - DDA3937_RS17040 0.77 -0.6 3,880,511 - DDA3937_RS17040 0.77 -0.9 3,880,511 - DDA3937_RS17040 0.77 -1.0 3,880,580 + DDA3937_RS17040 0.86 +0.0 3,880,580 + DDA3937_RS17040 0.86 +1.8 3,880,581 - DDA3937_RS17040 0.87 -1.3 3,880,600 + DDA3937_RS17040 0.89 -1.6 3,880,644 - -1.6 3,880,695 + -0.9 3,880,696 - +1.1 3,880,696 - -0.7 3,880,702 + +0.4 3,880,702 + +1.1 3,880,703 - +1.0 3,880,734 + -0.0 3,880,735 - -0.5 3,880,735 - +0.9 3,880,739 - +1.1 3,880,739 - +0.9 3,880,778 + +0.2 3,880,781 + +1.0 3,880,807 + -0.0 3,880,808 - -0.1
Or see this region's nucleotide sequence