Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16755

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,810,857	+		DDA3937_RS16745	0.38	+0.1
3,810,858	-		DDA3937_RS16745	0.38	+0.7
3,810,858	-		DDA3937_RS16745	0.38	-0.2
3,810,872	-		DDA3937_RS16745	0.40	+0.1
3,810,872	-		DDA3937_RS16745	0.40	-0.6
3,810,897	+		DDA3937_RS16745	0.43	-0.2
3,810,897	+		DDA3937_RS16745	0.43	+0.4
3,810,897	+		DDA3937_RS16745	0.43	+1.7
3,810,898	-		DDA3937_RS16745	0.43	-0.5
3,810,898	-		DDA3937_RS16745	0.43	-0.1
3,810,898	-		DDA3937_RS16745	0.43	+0.9
3,810,898	-		DDA3937_RS16745	0.43	-0.6
3,810,991	-		DDA3937_RS16745	0.56	+0.5
3,811,077	-		DDA3937_RS16745	0.67	+0.0
3,811,131	+		DDA3937_RS16745	0.74	-0.1
3,811,236	-		DDA3937_RS16745	0.88	-1.6
3,811,331	+				+0.4
3,811,331	+				+0.2
3,811,332	-				-0.1
3,811,339	+				+0.7
3,811,355	-				-0.5
3,811,371	-		DDA3937_RS16750	0.13	-1.0
3,811,582	-		DDA3937_RS16750	0.75	-0.7
3,811,600	+		DDA3937_RS16750	0.80	-0.4
3,811,601	-		DDA3937_RS16750	0.80	+1.9
3,811,601	-		DDA3937_RS16750	0.80	-1.3
3,811,601	-		DDA3937_RS16750	0.80	-1.0
3,811,604	-		DDA3937_RS16750	0.81	-1.2
3,811,604	-		DDA3937_RS16750	0.81	-1.4
3,811,630	-		DDA3937_RS16750	0.89	-0.6
3,811,636	+				+0.7
3,811,636	+				-1.2
3,811,636	+				+0.9
3,811,636	+				+0.3
3,811,637	-				+0.9
3,811,637	-				-0.8
3,811,637	-				-2.6
3,811,639	+				+0.3
3,811,639	+				-0.2
3,811,640	-				-1.3
3,811,640	-				-1.3
3,811,640	-				-0.7
3,811,640	-				-0.3
3,811,640	-				-0.2
3,811,643	+				+1.3
3,811,643	+				+0.9
3,811,643	+				+2.9
3,811,643	+				-0.3
3,811,644	-				-1.0
3,811,644	-				-1.3
3,811,644	-				+0.4
3,811,644	-				+0.0
3,811,672	-				-0.1
3,811,672	-				-0.8
3,811,672	-				-0.9
3,811,707	+				+1.1
3,811,708	-				-0.5
3,811,708	-				+1.7
3,811,708	-				-0.3
3,811,738	-				-1.3
3,811,738	-				-0.3
3,811,758	-				-0.5
3,811,758	-				-1.0
3,811,758	-				-1.3
3,811,764	+				-1.3
3,811,787	-				-1.7
3,811,790	+				-1.1
3,811,795	-				-1.5
3,811,810	+				-1.3
3,811,810	+				-0.9
3,811,880	+				-0.6
3,811,880	+				-0.9
3,811,881	-				-1.1
3,811,946	+		DDA3937_RS16755	0.20	-1.9
3,811,946	+		DDA3937_RS16755	0.20	-0.3
3,811,946	+		DDA3937_RS16755	0.20	-0.9
3,811,946	+		DDA3937_RS16755	0.20	-1.7
3,811,946	+		DDA3937_RS16755	0.20	-0.5
3,811,947	-		DDA3937_RS16755	0.20	-1.7
3,811,947	-		DDA3937_RS16755	0.20	-1.0
3,811,947	-		DDA3937_RS16755	0.20	-0.0
3,811,979	+		DDA3937_RS16755	0.27	-0.8
3,811,979	+		DDA3937_RS16755	0.27	-0.8
3,811,979	+		DDA3937_RS16755	0.27	-1.3
3,811,980	-		DDA3937_RS16755	0.27	-1.0
3,812,027	+		DDA3937_RS16755	0.36	-1.7
3,812,182	-		DDA3937_RS16755	0.66	-0.6
3,812,187	+		DDA3937_RS16755	0.67	-0.6
3,812,187	+		DDA3937_RS16755	0.67	-0.3
3,812,187	+		DDA3937_RS16755	0.67	-1.7
3,812,187	+		DDA3937_RS16755	0.67	-1.9
3,812,187	+		DDA3937_RS16755	0.67	-1.6
3,812,187	+		DDA3937_RS16755	0.67	-2.5
3,812,187	+		DDA3937_RS16755	0.67	-1.5
3,812,188	-		DDA3937_RS16755	0.67	-2.3
3,812,188	-		DDA3937_RS16755	0.67	+0.1
3,812,188	-		DDA3937_RS16755	0.67	-0.9
3,812,188	-		DDA3937_RS16755	0.67	-2.3
3,812,188	-		DDA3937_RS16755	0.67	-1.1
3,812,188	-		DDA3937_RS16755	0.67	+0.1
3,812,188	-		DDA3937_RS16755	0.67	-1.5
3,812,252	+		DDA3937_RS16755	0.80	-1.1
3,812,352	+				-0.2
3,812,352	+				+0.9
3,812,353	-				-0.3
3,812,409	+				+0.4
3,812,410	-				+0.1
3,812,410	-				-1.0
3,812,410	-				+0.1
3,812,420	+				-1.0
3,812,421	-				+1.0
3,812,514	-				-0.2
3,812,564	+				+0.3
3,812,564	+				-2.3
3,812,564	+				+0.0
3,812,564	+				+0.7
3,812,564	+				-0.9
3,812,564	+				+0.3
3,812,564	+				-0.3
3,812,565	-				+0.6
3,812,565	-				-1.3
3,812,565	-				+1.0
3,812,653	-		DDA3937_RS16760	0.11	-0.3
3,812,658	+		DDA3937_RS16760	0.11	-1.0
3,812,658	+		DDA3937_RS16760	0.11	-0.0
3,812,658	+		DDA3937_RS16760	0.11	-0.9
3,812,659	-		DDA3937_RS16760	0.11	+0.1
3,812,659	-		DDA3937_RS16760	0.11	-0.1
3,812,659	-		DDA3937_RS16760	0.11	+0.2
3,812,697	+		DDA3937_RS16760	0.14	+0.7
3,812,697	+		DDA3937_RS16760	0.14	+0.7
3,812,697	+		DDA3937_RS16760	0.14	+0.7
3,812,697	+		DDA3937_RS16760	0.14	-0.0
3,812,698	-		DDA3937_RS16760	0.14	-0.5
3,812,698	-		DDA3937_RS16760	0.14	-1.3
3,812,723	+		DDA3937_RS16760	0.16	-0.3
3,812,723	+		DDA3937_RS16760	0.16	+0.3
3,812,724	-		DDA3937_RS16760	0.17	-1.6
3,812,724	-		DDA3937_RS16760	0.17	-0.3
3,812,724	-		DDA3937_RS16760	0.17	-1.6
3,812,781	-		DDA3937_RS16760	0.21	-1.5
3,812,904	+		DDA3937_RS16760	0.32	+1.2
3,812,904	+		DDA3937_RS16760	0.32	+0.2
3,813,072	+		DDA3937_RS16760	0.46	-0.6
3,813,072	+		DDA3937_RS16760	0.46	-0.1
3,813,072	+		DDA3937_RS16760	0.46	+1.4
3,813,073	-		DDA3937_RS16760	0.46	-0.9
3,813,101	+		DDA3937_RS16760	0.49	-0.1
3,813,140	+		DDA3937_RS16760	0.52	-0.1
3,813,141	-		DDA3937_RS16760	0.52	+0.1
3,813,176	+		DDA3937_RS16760	0.55	+1.7
3,813,177	-		DDA3937_RS16760	0.55	-1.8
3,813,177	-		DDA3937_RS16760	0.55	-0.9
3,813,177	-		DDA3937_RS16760	0.55	-1.2
3,813,182	+		DDA3937_RS16760	0.56	+0.7
3,813,204	+		DDA3937_RS16760	0.57	-1.8
3,813,204	+		DDA3937_RS16760	0.57	+0.4
3,813,204	+		DDA3937_RS16760	0.57	+0.9
3,813,204	+		DDA3937_RS16760	0.57	+1.3
3,813,204	+		DDA3937_RS16760	0.57	-0.3
3,813,205	-		DDA3937_RS16760	0.57	-3.4
3,813,205	-		DDA3937_RS16760	0.57	+1.1
3,813,205	-		DDA3937_RS16760	0.57	-0.4
3,813,205	-		DDA3937_RS16760	0.57	-0.2
3,813,205	-		DDA3937_RS16760	0.57	-0.1
3,813,230	-		DDA3937_RS16760	0.60	-0.4
3,813,306	-		DDA3937_RS16760	0.66	-1.2
3,813,306	-		DDA3937_RS16760	0.66	+2.3