Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15420

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,534,963	-		DDA3937_RS15415	0.67	-0.2
3,535,288	-		DDA3937_RS15415	0.87	+2.7
3,535,557	-				-0.9
3,535,557	-				-0.6
3,535,590	-				-0.1
3,535,590	-				-2.9
3,535,590	-				-1.0
3,535,771	-		DDA3937_RS15420	0.13	-1.0
3,535,772	+		DDA3937_RS15420	0.13	-3.4
3,535,836	-		DDA3937_RS15420	0.18	-0.7
3,535,893	+		DDA3937_RS15420	0.22	-2.2
3,535,910	+		DDA3937_RS15420	0.23	-0.2
3,535,910	+		DDA3937_RS15420	0.23	-1.8
3,535,910	+		DDA3937_RS15420	0.23	-0.8
3,535,911	-		DDA3937_RS15420	0.23	-2.2
3,535,911	-		DDA3937_RS15420	0.23	+1.9
3,535,911	-		DDA3937_RS15420	0.23	-1.8
3,535,966	+		DDA3937_RS15420	0.27	-0.7
3,536,124	+		DDA3937_RS15420	0.37	-0.4
3,536,125	-		DDA3937_RS15420	0.38	-1.1
3,536,130	+		DDA3937_RS15420	0.38	-0.1
3,536,130	+		DDA3937_RS15420	0.38	-2.0
3,536,131	-		DDA3937_RS15420	0.38	-1.3
3,536,131	-		DDA3937_RS15420	0.38	+0.0
3,536,165	-		DDA3937_RS15420	0.40	-1.2
3,536,242	-		DDA3937_RS15420	0.45	-1.4
3,536,340	+		DDA3937_RS15420	0.52	-2.0
3,536,406	+		DDA3937_RS15420	0.57	-0.3
3,536,406	+		DDA3937_RS15420	0.57	-0.9
3,536,422	-		DDA3937_RS15420	0.58	-1.7
3,536,446	+		DDA3937_RS15420	0.59	-1.2
3,536,643	+		DDA3937_RS15420	0.73	-0.4
3,536,814	+		DDA3937_RS15420	0.85	-1.6
3,536,815	-		DDA3937_RS15420	0.85	-1.0
3,536,890	-		DDA3937_RS15420	0.90	+0.4
3,536,946	+				-0.8
3,536,947	-				-2.2
3,536,947	-				+0.2
3,537,034	+				-1.9
3,537,034	+				-1.4
3,537,034	+				-2.4
3,537,034	+				-2.2
3,537,034	+				+1.2
3,537,035	-				-0.9
3,537,035	-				-0.8
3,537,035	-				-1.1
3,537,035	-				-0.4
3,537,035	-				-0.3
3,537,035	-				-1.0
3,537,045	+				-1.1
3,537,045	+				-1.4
3,537,046	-				-3.0
3,537,046	-				+0.6
3,537,071	+				-0.8
3,537,071	+				-1.0
3,537,076	-				-0.8
3,537,094	+				-1.6
3,537,094	+				-2.3
3,537,095	-				-1.0
3,537,095	-				-1.8
3,537,095	-				-0.6
3,537,095	-				-1.2
3,537,166	+				+0.0
3,537,166	+				+2.4
3,537,166	+				-0.2
3,537,166	+				-0.3
3,537,167	-				-0.5
3,537,176	+				-0.8
3,537,176	+				-0.1
3,537,177	-				+0.0
3,537,239	-				-1.1
3,537,239	-				+1.3
3,537,239	-				-0.6
3,537,239	-				-1.7
3,537,242	+				+0.1
3,537,242	+				-0.1
3,537,242	+				-0.2
3,537,268	+				-0.5
3,537,268	+				-0.6
3,537,354	+		DDA3937_RS15425	0.10	+0.3
3,537,354	+		DDA3937_RS15425	0.10	-2.0
3,537,428	+		DDA3937_RS15425	0.16	-0.4
3,537,429	-		DDA3937_RS15425	0.16	+0.8
3,537,477	+		DDA3937_RS15425	0.19	-0.3
3,537,603	+		DDA3937_RS15425	0.28	-0.0
3,537,603	+		DDA3937_RS15425	0.28	+1.2
3,537,603	+		DDA3937_RS15425	0.28	-0.1
3,537,603	+		DDA3937_RS15425	0.28	-1.1
3,537,603	+		DDA3937_RS15425	0.28	+0.1
3,537,603	+		DDA3937_RS15425	0.28	+0.3
3,537,603	+		DDA3937_RS15425	0.28	-0.7
3,537,604	-		DDA3937_RS15425	0.28	+0.0
3,537,604	-		DDA3937_RS15425	0.28	+0.0
3,537,604	-		DDA3937_RS15425	0.28	-0.5
3,537,604	-		DDA3937_RS15425	0.28	+0.4
3,537,604	-		DDA3937_RS15425	0.28	-0.9
3,537,604	-		DDA3937_RS15425	0.28	+0.6
3,537,604	-		DDA3937_RS15425	0.28	-0.4
3,537,647	+		DDA3937_RS15425	0.31	+1.6
3,537,648	-		DDA3937_RS15425	0.32	+0.1
3,537,648	-		DDA3937_RS15425	0.32	+0.6
3,537,721	+		DDA3937_RS15425	0.37	+0.6
3,537,721	+		DDA3937_RS15425	0.37	+0.6
3,537,726	+		DDA3937_RS15425	0.37	+0.0
3,537,726	+		DDA3937_RS15425	0.37	-0.1
3,537,784	+		DDA3937_RS15425	0.41	-1.4
3,537,784	+		DDA3937_RS15425	0.41	+0.3
3,537,785	-		DDA3937_RS15425	0.41	-0.4
3,537,884	+		DDA3937_RS15425	0.49	+1.1
3,537,884	+		DDA3937_RS15425	0.49	+1.4