Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14945

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,428,930	+		DDA3937_RS14940	0.20	+0.5
3,428,930	+		DDA3937_RS14940	0.20	-1.2
3,428,931	-		DDA3937_RS14940	0.20	+0.5
3,428,931	-		DDA3937_RS14940	0.20	-1.9
3,428,931	-		DDA3937_RS14940	0.20	-0.1
3,428,933	+		DDA3937_RS14940	0.20	+0.3
3,428,933	+		DDA3937_RS14940	0.20	-1.8
3,428,934	-		DDA3937_RS14940	0.20	-0.7
3,428,934	-		DDA3937_RS14940	0.20	-0.7
3,429,198	+		DDA3937_RS14940	0.44	-0.1
3,429,488	+		DDA3937_RS14940	0.70	-0.2
3,429,488	+		DDA3937_RS14940	0.70	-1.0
3,429,489	-		DDA3937_RS14940	0.70	-0.1
3,429,489	-		DDA3937_RS14940	0.70	-0.5
3,429,527	-		DDA3937_RS14940	0.74	-0.5
3,429,527	-		DDA3937_RS14940	0.74	+1.4
3,429,527	-		DDA3937_RS14940	0.74	+0.5
3,429,527	-		DDA3937_RS14940	0.74	-0.3
3,429,552	-		DDA3937_RS14940	0.76	-0.3
3,429,552	-		DDA3937_RS14940	0.76	-0.7
3,429,576	-		DDA3937_RS14940	0.78	-0.2
3,429,660	+		DDA3937_RS14940	0.86	+0.8
3,429,754	+				+2.5
3,429,816	+				+0.1
3,429,816	+				+0.3
3,429,817	-				-0.1
3,429,851	+				+0.4
3,429,851	+				+0.2
3,429,851	+				-0.7
3,429,852	-				+0.3
3,429,852	-				-1.7
3,429,852	-				-0.1
3,429,852	-				-0.8
3,429,852	-				-0.2
3,429,852	-				-2.0
3,429,892	+				-1.0
3,429,892	+				-0.1
3,429,893	-				-0.2
3,429,893	-				-1.5
3,429,893	-				-0.3
3,429,969	+		DDA3937_RS14945	0.23	-1.0
3,429,977	+		DDA3937_RS14945	0.26	-0.6
3,429,978	-		DDA3937_RS14945	0.26	-1.0
3,429,978	-		DDA3937_RS14945	0.26	+2.5
3,430,071	-		DDA3937_RS14945	0.54	-1.9
3,430,080	-		DDA3937_RS14945	0.56	-0.3
3,430,214	+				+0.0
3,430,214	+				+0.2
3,430,215	-				+0.5
3,430,218	+				+0.5
3,430,218	+				+0.5
3,430,218	+				-2.5
3,430,240	-				+0.4
3,430,254	+				-0.0
3,430,254	+				-0.0
3,430,255	-				+1.0
3,430,255	-				+0.2
3,430,262	+				-1.4
3,430,264	+				-1.3
3,430,264	+				+0.4
3,430,264	+				+1.1
3,430,264	+				-1.2
3,430,264	+				-1.5
3,430,265	-				+0.5
3,430,265	-				+1.2
3,430,265	-				+1.0
3,430,265	-				+1.1
3,430,265	-				+1.1
3,430,265	-				-0.5
3,430,272	+				-0.4
3,430,273	-				+0.5
3,430,300	+		DDA3937_RS14950	0.16	-0.8
3,430,301	-		DDA3937_RS14950	0.17	+1.7
3,430,302	+		DDA3937_RS14950	0.17	+0.2
3,430,302	+		DDA3937_RS14950	0.17	+0.4
3,430,302	+		DDA3937_RS14950	0.17	+0.2
3,430,302	+		DDA3937_RS14950	0.17	-1.0
3,430,303	-		DDA3937_RS14950	0.17	+0.9
3,430,303	-		DDA3937_RS14950	0.17	+0.7
3,430,303	-		DDA3937_RS14950	0.17	+1.3
3,430,303	-		DDA3937_RS14950	0.17	+1.7
3,430,303	-		DDA3937_RS14950	0.17	+0.2
3,430,365	-		DDA3937_RS14950	0.43	+1.4
3,430,365	-		DDA3937_RS14950	0.43	+1.3
3,430,365	-		DDA3937_RS14950	0.43	+1.7
3,430,365	-		DDA3937_RS14950	0.43	+2.1
3,430,365	-		DDA3937_RS14950	0.43	+1.3
3,430,366	+		DDA3937_RS14950	0.44	+0.3
3,430,453	+				+1.5
3,430,486	-				+0.8
3,430,504	-				+0.8
3,430,504	-				+1.3
3,430,534	+				-0.0
3,430,534	+				+1.1
3,430,538	-				+1.2
3,430,542	+				-0.6
3,430,543	-				+1.1
3,430,560	+				+0.3
3,430,561	-				+1.6
3,430,561	-				+1.3
3,430,561	-				+0.9
3,430,561	-				+1.6
3,430,565	-				-1.0
3,430,565	-				+1.1
3,430,648	+				+0.1
3,430,709	+				-0.4
3,430,780	+				-0.2
3,430,780	+				-0.0
3,430,781	-				+0.7
3,430,781	-				+1.2
3,430,783	-				+0.6
3,430,783	-				+1.2
3,430,783	-				-0.1
3,430,783	-				+0.9
3,430,785	+				+0.2
3,430,786	-				+1.2
3,430,795	-				-0.0
3,430,822	-				+1.7
3,430,848	+				+0.1
3,430,849	-				+1.1
3,430,874	+				-1.0
3,430,875	-				+0.4
3,430,881	-				+0.3
3,430,881	-				+0.5
3,430,881	-				+0.7
3,430,881	-				+0.7
3,430,884	+				-0.3
3,430,884	+				+0.5
3,430,885	-				+0.7
3,430,885	-				+0.6
3,430,885	-				+0.8
3,430,885	-				+0.9
3,430,885	-				-1.0
3,430,887	-				+1.2
3,430,889	-				+0.2
3,430,889	-				+0.3
3,430,889	-				+1.6
3,430,889	-				+0.4
3,430,889	-				+1.2
3,430,889	-				+0.1
3,430,891	+				-1.0
3,430,892	-				-0.2
3,430,892	-				+0.2
3,430,892	-				-0.0
3,430,892	-				+1.0
3,431,000	+		DDA3937_RS14955	0.12	+0.3
3,431,001	-		DDA3937_RS14955	0.12	-0.1
3,431,001	-		DDA3937_RS14955	0.12	+0.4
3,431,034	-		DDA3937_RS14955	0.15	+0.9
3,431,124	+		DDA3937_RS14955	0.24	+0.0
3,431,125	-		DDA3937_RS14955	0.24	+0.7
3,431,171	-		DDA3937_RS14955	0.29	+0.2
3,431,171	-		DDA3937_RS14955	0.29	-2.5