Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS14580 and DDA3937_RS14585 are separated by 72 nucleotides DDA3937_RS14585 and DDA3937_RS14590 are separated by 295 nucleotides DDA3937_RS14590 and DDA3937_RS14595 are separated by 101 nucleotides
DDA3937_RS14580: DDA3937_RS14580 - chorismate synthase, at 3,336,554 to 3,337,639
_RS14580
DDA3937_RS14585: DDA3937_RS14585 - 50S ribosomal protein L3 N(5)-glutamine methyltransferase, at 3,337,712 to 3,338,644
_RS14585
DDA3937_RS14590: DDA3937_RS14590 - endonuclease SmrB, at 3,338,940 to 3,339,482
_RS14590
DDA3937_RS14595: DDA3937_RS14595 - phosphohistidine phosphatase SixA, at 3,339,584 to 3,340,069
_RS14595
Position (kb)
3337
3338
3339 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3337.688 kb on - strand at 3338.096 kb on - strand, within DDA3937_RS14585 at 3338.096 kb on - strand, within DDA3937_RS14585 at 3338.098 kb on - strand, within DDA3937_RS14585 at 3338.098 kb on - strand, within DDA3937_RS14585 at 3338.098 kb on - strand, within DDA3937_RS14585 at 3338.156 kb on - strand at 3338.370 kb on + strand, within DDA3937_RS14585 at 3338.545 kb on - strand, within DDA3937_RS14585 at 3338.548 kb on - strand, within DDA3937_RS14585 at 3338.548 kb on - strand, within DDA3937_RS14585 at 3338.603 kb on - strand at 3338.603 kb on - strand at 3338.663 kb on - strand at 3338.750 kb on + strand at 3338.751 kb on - strand at 3338.751 kb on - strand at 3338.751 kb on - strand at 3338.827 kb on - strand at 3338.827 kb on - strand at 3338.827 kb on - strand at 3338.827 kb on - strand at 3338.827 kb on - strand at 3338.851 kb on + strand at 3338.852 kb on - strand at 3338.907 kb on - strand at 3339.014 kb on - strand, within DDA3937_RS14590 at 3339.027 kb on + strand at 3339.027 kb on + strand, within DDA3937_RS14590 at 3339.027 kb on + strand, within DDA3937_RS14590 at 3339.027 kb on + strand, within DDA3937_RS14590 at 3339.027 kb on + strand, within DDA3937_RS14590 at 3339.027 kb on + strand, within DDA3937_RS14590 at 3339.027 kb on + strand, within DDA3937_RS14590 at 3339.027 kb on + strand, within DDA3937_RS14590 at 3339.027 kb on + strand, within DDA3937_RS14590 at 3339.027 kb on + strand, within DDA3937_RS14590 at 3339.027 kb on + strand, within DDA3937_RS14590 at 3339.027 kb on + strand, within DDA3937_RS14590 at 3339.027 kb on + strand, within DDA3937_RS14590 at 3339.027 kb on + strand, within DDA3937_RS14590 at 3339.028 kb on - strand at 3339.028 kb on - strand, within DDA3937_RS14590 at 3339.028 kb on - strand, within DDA3937_RS14590 at 3339.028 kb on - strand, within DDA3937_RS14590 at 3339.028 kb on - strand, within DDA3937_RS14590 at 3339.028 kb on - strand, within DDA3937_RS14590 at 3339.028 kb on - strand, within DDA3937_RS14590 at 3339.159 kb on + strand, within DDA3937_RS14590 at 3339.160 kb on - strand, within DDA3937_RS14590 at 3339.160 kb on - strand, within DDA3937_RS14590 at 3339.160 kb on - strand, within DDA3937_RS14590 at 3339.160 kb on - strand, within DDA3937_RS14590 at 3339.160 kb on - strand, within DDA3937_RS14590 at 3339.213 kb on + strand, within DDA3937_RS14590 at 3339.312 kb on + strand, within DDA3937_RS14590 at 3339.312 kb on + strand, within DDA3937_RS14590 at 3339.313 kb on - strand, within DDA3937_RS14590 at 3339.353 kb on + strand, within DDA3937_RS14590 at 3339.353 kb on + strand, within DDA3937_RS14590 at 3339.394 kb on + strand, within DDA3937_RS14590 at 3339.633 kb on + strand, within DDA3937_RS14595 at 3339.633 kb on + strand, within DDA3937_RS14595 at 3339.635 kb on + strand, within DDA3937_RS14595
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,337,688 - +0.5 3,338,096 - DDA3937_RS14585 0.41 +1.6 3,338,096 - DDA3937_RS14585 0.41 -2.1 3,338,098 - DDA3937_RS14585 0.41 -0.7 3,338,098 - DDA3937_RS14585 0.41 +0.2 3,338,098 - DDA3937_RS14585 0.41 -1.8 3,338,156 - +1.1 3,338,370 + DDA3937_RS14585 0.71 -0.5 3,338,545 - DDA3937_RS14585 0.89 +1.2 3,338,548 - DDA3937_RS14585 0.90 +1.3 3,338,548 - DDA3937_RS14585 0.90 +0.5 3,338,603 - +0.2 3,338,603 - -1.1 3,338,663 - -1.6 3,338,750 + +0.0 3,338,751 - -0.2 3,338,751 - -1.7 3,338,751 - -1.5 3,338,827 - -0.3 3,338,827 - -1.0 3,338,827 - -0.3 3,338,827 - +0.3 3,338,827 - +0.0 3,338,851 + -1.7 3,338,852 - +1.9 3,338,907 - -0.3 3,339,014 - DDA3937_RS14590 0.14 -0.3 3,339,027 + -0.1 3,339,027 + DDA3937_RS14590 0.16 +0.1 3,339,027 + DDA3937_RS14590 0.16 +0.0 3,339,027 + DDA3937_RS14590 0.16 +0.3 3,339,027 + DDA3937_RS14590 0.16 +0.0 3,339,027 + DDA3937_RS14590 0.16 +0.8 3,339,027 + DDA3937_RS14590 0.16 -0.7 3,339,027 + DDA3937_RS14590 0.16 +2.1 3,339,027 + DDA3937_RS14590 0.16 +0.5 3,339,027 + DDA3937_RS14590 0.16 -0.7 3,339,027 + DDA3937_RS14590 0.16 -2.3 3,339,027 + DDA3937_RS14590 0.16 +0.5 3,339,027 + DDA3937_RS14590 0.16 -0.0 3,339,027 + DDA3937_RS14590 0.16 -0.6 3,339,028 - +0.5 3,339,028 - DDA3937_RS14590 0.16 -0.4 3,339,028 - DDA3937_RS14590 0.16 -0.9 3,339,028 - DDA3937_RS14590 0.16 -1.1 3,339,028 - DDA3937_RS14590 0.16 -0.1 3,339,028 - DDA3937_RS14590 0.16 -1.9 3,339,028 - DDA3937_RS14590 0.16 -0.1 3,339,159 + DDA3937_RS14590 0.40 -1.7 3,339,160 - DDA3937_RS14590 0.41 +1.1 3,339,160 - DDA3937_RS14590 0.41 +1.5 3,339,160 - DDA3937_RS14590 0.41 -0.3 3,339,160 - DDA3937_RS14590 0.41 -2.2 3,339,160 - DDA3937_RS14590 0.41 -1.6 3,339,213 + DDA3937_RS14590 0.50 -1.6 3,339,312 + DDA3937_RS14590 0.69 -0.9 3,339,312 + DDA3937_RS14590 0.69 -0.3 3,339,313 - DDA3937_RS14590 0.69 +0.4 3,339,353 + DDA3937_RS14590 0.76 -0.3 3,339,353 + DDA3937_RS14590 0.76 -1.8 3,339,394 + DDA3937_RS14590 0.84 +0.0 3,339,633 + DDA3937_RS14595 0.10 -1.6 3,339,633 + DDA3937_RS14595 0.10 -0.9 3,339,635 + DDA3937_RS14595 0.10 -1.3
Or see this region's nucleotide sequence