Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13495

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,073,609	+		DDA3937_RS13485	0.20	-1.1
3,073,609	+		DDA3937_RS13485	0.20	+0.2
3,073,609	+		DDA3937_RS13485	0.20	+0.1
3,073,609	+		DDA3937_RS13485	0.20	-0.8
3,073,610	-		DDA3937_RS13485	0.21	-0.8
3,073,610	-		DDA3937_RS13485	0.21	-2.1
3,073,752	+		DDA3937_RS13485	0.42	+0.0
3,073,752	+		DDA3937_RS13485	0.42	-0.8
3,073,753	-		DDA3937_RS13485	0.42	-0.4
3,073,769	+		DDA3937_RS13485	0.44	-1.8
3,073,769	+		DDA3937_RS13485	0.44	-1.1
3,073,769	+		DDA3937_RS13485	0.44	+1.4
3,073,769	+		DDA3937_RS13485	0.44	-1.8
3,073,769	+		DDA3937_RS13485	0.44	-1.6
3,073,769	+		DDA3937_RS13485	0.44	-0.5
3,073,769	+		DDA3937_RS13485	0.44	-0.8
3,073,769	+		DDA3937_RS13485	0.44	-1.3
3,073,769	+		DDA3937_RS13485	0.44	-0.6
3,073,769	+		DDA3937_RS13485	0.44	-1.8
3,073,770	-		DDA3937_RS13485	0.45	-1.2
3,073,770	-		DDA3937_RS13485	0.45	-1.5
3,073,770	-		DDA3937_RS13485	0.45	+0.3
3,073,770	-		DDA3937_RS13485	0.45	-0.2
3,073,770	-		DDA3937_RS13485	0.45	-1.8
3,073,770	-		DDA3937_RS13485	0.45	-0.2
3,074,021	-		DDA3937_RS13485	0.82	-1.0
3,074,095	-				-1.5
3,074,123	-				-1.5
3,074,138	+				-2.2
3,074,139	-				-1.3
3,074,147	-				-0.5
3,074,151	+				-0.5
3,074,151	+				-2.3
3,074,151	+				-1.0
3,074,151	+				+0.5
3,074,171	-				-0.5
3,074,177	+				+0.8
3,074,177	+				+0.0
3,074,177	+				-0.2
3,074,177	+				+0.4
3,074,177	+				+0.1
3,074,177	+				+0.8
3,074,177	+				-0.1
3,074,177	+				-0.0
3,074,177	+				-0.6
3,074,178	-				-1.1
3,074,178	-				-0.6
3,074,181	+				-1.1
3,074,181	+				+0.7
3,074,181	+				+0.3
3,074,181	+				-0.5
3,074,181	+				-1.1
3,074,182	-				-1.5
3,074,182	-				-2.3
3,074,194	+				+1.0
3,074,194	+				-0.6
3,074,207	+				+0.9
3,074,207	+				-0.6
3,074,281	+				+0.2
3,074,514	+		DDA3937_RS13490	0.76	-0.6
3,074,552	-		DDA3937_RS13490	0.89	-0.4
3,074,602	+				-0.4
3,074,603	-				-0.3
3,074,734	+		DDA3937_RS13495	0.33	-0.2
3,074,805	+		DDA3937_RS13495	0.49	+0.4
3,074,805	+		DDA3937_RS13495	0.49	-1.6
3,074,806	-		DDA3937_RS13495	0.50	-0.6
3,074,810	+		DDA3937_RS13495	0.50	-1.8
3,074,811	-		DDA3937_RS13495	0.51	-2.1
3,074,811	-		DDA3937_RS13495	0.51	-0.8
3,074,855	-		DDA3937_RS13495	0.61	-0.8
3,075,020	+				-0.7
3,075,048	+				-0.5
3,075,049	-				-0.5
3,075,056	+				-0.3
3,075,056	+				-0.5
3,075,056	+				+0.5
3,075,056	+				-2.1
3,075,056	+				-1.2
3,075,056	+				+1.3
3,075,057	-				+0.3
3,075,057	-				+1.3
3,075,057	-				-0.8
3,075,057	-				-0.7
3,075,057	-				+0.5
3,075,060	+				-0.1
3,075,061	-				-0.0
3,075,082	+				+0.1
3,075,083	-				-0.5
3,075,083	-				-0.1
3,075,083	-				-1.4
3,075,083	-				-0.7
3,075,083	-				-0.5
3,075,090	+				-2.5
3,075,091	-				+0.2
3,075,098	+				-0.2
3,075,099	-				-0.4
3,075,099	-				-2.1
3,075,102	+				+0.0
3,075,102	+				-0.5
3,075,102	+				+0.3
3,075,103	-				-0.4
3,075,103	-				+0.5
3,075,103	-				-0.4
3,075,103	-				-0.1
3,075,104	+				+0.1
3,075,104	+				-0.7
3,075,105	-				-1.9
3,075,105	-				+0.1
3,075,170	+		DDA3937_RS13500	0.17	+0.1
3,075,170	+		DDA3937_RS13500	0.17	-0.1
3,075,171	-		DDA3937_RS13500	0.17	-0.5
3,075,171	-		DDA3937_RS13500	0.17	-2.3
3,075,171	-		DDA3937_RS13500	0.17	+0.5
3,075,171	-				-0.5
3,075,171	-		DDA3937_RS13500	0.17	+0.2
3,075,184	-		DDA3937_RS13500	0.21	-1.1
3,075,202	+		DDA3937_RS13500	0.25	-2.3
3,075,203	-		DDA3937_RS13500	0.25	+0.1
3,075,259	-		DDA3937_RS13500	0.38	-0.2
3,075,286	+		DDA3937_RS13500	0.45	+0.2
3,075,286	+		DDA3937_RS13500	0.45	-0.6
3,075,320	+		DDA3937_RS13500	0.53	+0.7
3,075,321	-				+0.5
3,075,404	+		DDA3937_RS13500	0.73	+1.1
3,075,405	-		DDA3937_RS13500	0.73	-0.5
3,075,485	-				+0.2
3,075,489	+				+0.2
3,075,489	+				-0.3
3,075,490	-				-1.1
3,075,490	-				+0.6
3,075,492	+				+0.9
3,075,493	-				+2.7
3,075,630	+				-0.9
3,075,631	-				-0.4
3,075,693	+				-2.8
3,075,693	+				-1.3
3,075,693	+				-2.7
3,075,693	+				-0.5
3,075,694	-				+0.1
3,075,694	-				-0.7
3,075,694	-				-0.8
3,075,694	-				-1.1
3,075,694	-				-0.5
3,075,768	+		DDA3937_RS13505	0.12	+0.5
3,075,769	-		DDA3937_RS13505	0.12	+0.1
3,075,792	-		DDA3937_RS13505	0.13	-0.1
3,075,792	-		DDA3937_RS13505	0.13	-1.4
3,075,845	+		DDA3937_RS13505	0.16	-0.4
3,075,863	+		DDA3937_RS13505	0.16	-0.4
3,075,876	-		DDA3937_RS13505	0.17	-0.9
3,075,886	+		DDA3937_RS13505	0.18	+0.2
3,075,887	-		DDA3937_RS13505	0.18	-1.1
3,075,999	+		DDA3937_RS13505	0.23	+0.3
3,076,019	+		DDA3937_RS13505	0.24	-0.4
3,076,019	+		DDA3937_RS13505	0.24	-0.2
3,076,019	+		DDA3937_RS13505	0.24	-1.8
3,076,020	-		DDA3937_RS13505	0.24	-0.5