Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13435

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,062,942	+				+0.5
3,062,942	+				-0.7
3,062,956	+				-0.1
3,062,976	+				-1.4
3,062,980	+				-1.3
3,062,980	+				-1.3
3,062,981	-				+0.2
3,063,027	+				-2.0
3,063,027	+				-1.3
3,063,027	+				-1.4
3,063,027	+				-0.6
3,063,028	-				-1.2
3,063,028	-				-1.2
3,063,058	+				-0.3
3,063,058	+				-2.1
3,063,058	+				-2.0
3,063,058	+				-1.1
3,063,058	+				-0.5
3,063,059	-				-1.9
3,063,060	+				-0.9
3,063,061	-				-0.8
3,063,061	-				-1.7
3,063,061	-				-0.1
3,063,061	-				-1.5
3,063,061	-				-1.1
3,063,061	-				-1.1
3,063,061	-				-1.5
3,063,061	-				-2.1
3,063,061	-				-3.1
3,063,061	-				-0.7
3,063,061	-				-1.8
3,063,127	+		DDA3937_RS13430	0.16	-0.8
3,063,127	+		DDA3937_RS13430	0.16	-0.4
3,063,127	+		DDA3937_RS13430	0.16	-2.7
3,063,128	-		DDA3937_RS13430	0.16	-1.5
3,063,128	-		DDA3937_RS13430	0.16	+0.2
3,063,128	-		DDA3937_RS13430	0.16	-0.4
3,063,245	-		DDA3937_RS13430	0.29	-0.5
3,063,245	-		DDA3937_RS13430	0.29	-1.2
3,063,245	-		DDA3937_RS13430	0.29	-1.7
3,063,359	-		DDA3937_RS13430	0.41	+0.6
3,063,363	-		DDA3937_RS13430	0.42	+0.2
3,063,430	+		DDA3937_RS13430	0.49	-0.5
3,063,441	+		DDA3937_RS13430	0.50	+0.5
3,063,441	+		DDA3937_RS13430	0.50	-2.1
3,063,441	+		DDA3937_RS13430	0.50	-3.3
3,063,441	+		DDA3937_RS13430	0.50	-3.1
3,063,441	+		DDA3937_RS13430	0.50	-1.8
3,063,441	+		DDA3937_RS13430	0.50	+0.3
3,063,441	+		DDA3937_RS13430	0.50	-0.9
3,063,441	+		DDA3937_RS13430	0.50	-3.5
3,063,441	+		DDA3937_RS13430	0.50	-0.4
3,063,441	+		DDA3937_RS13430	0.50	-2.1
3,063,441	+		DDA3937_RS13430	0.50	-2.2
3,063,441	+		DDA3937_RS13430	0.50	-0.7
3,063,442	-		DDA3937_RS13430	0.50	-1.1
3,063,442	-		DDA3937_RS13430	0.50	+0.0
3,063,467	-		DDA3937_RS13430	0.53	-1.4
3,063,469	+		DDA3937_RS13430	0.53	-2.3
3,063,469	+		DDA3937_RS13430	0.53	-2.7
3,063,469	+		DDA3937_RS13430	0.53	-0.5
3,063,470	-		DDA3937_RS13430	0.53	-2.1
3,063,508	-		DDA3937_RS13430	0.57	-0.6
3,063,526	+		DDA3937_RS13430	0.59	-1.2
3,063,527	-		DDA3937_RS13430	0.59	-1.3
3,063,607	+		DDA3937_RS13430	0.68	-0.1
3,063,620	+		DDA3937_RS13430	0.69	-1.2
3,063,621	-		DDA3937_RS13430	0.69	-1.6
3,063,683	-		DDA3937_RS13430	0.76	-1.0
3,063,683	-		DDA3937_RS13430	0.76	-1.1
3,063,688	+		DDA3937_RS13430	0.77	-2.3
3,063,720	+		DDA3937_RS13430	0.80	-3.1
3,063,806	-		DDA3937_RS13430	0.89	-1.8
3,063,806	-		DDA3937_RS13430	0.89	-0.6
3,063,806	-		DDA3937_RS13430	0.89	+0.5
3,063,806	-		DDA3937_RS13430	0.89	-1.7
3,063,806	-		DDA3937_RS13430	0.89	-1.3
3,063,869	-				-1.1
3,063,869	-				-0.7
3,063,869	-				-1.1
3,063,884	-				-2.3
3,063,884	-				+1.2
3,063,887	-				-2.7
3,063,887	-				-1.1
3,063,892	+				-0.5
3,063,893	-				-2.1
3,063,905	-				-1.8
3,063,905	-				-1.2
3,063,909	+				-2.1
3,063,909	+				-0.7
3,063,910	-				-0.9
3,063,920	-				-0.9
3,063,920	-				+1.7
3,063,924	+				-1.0
3,063,939	-				+0.4
3,063,942	+				-0.6
3,063,943	-				-0.2
3,063,943	-				-0.3
3,063,988	+				-0.8
3,063,989	-				-2.8
3,064,007	+				-1.1
3,064,007	+				-0.6
3,064,007	+				-0.8
3,064,007	+				-2.0
3,064,007	+				+0.2
3,064,007	+				-1.3
3,064,007	+				-1.1
3,064,008	-				-0.9
3,064,008	-				-1.3
3,064,008	-				-1.2
3,064,008	-				-1.5
3,064,008	-				-2.0
3,064,008	-				-1.1
3,064,008	-				-0.9
3,064,008	-				+0.1
3,064,008	-				-2.5
3,064,008	-				-0.5
3,064,011	-				-3.2
3,064,011	-				-0.1
3,064,011	-				-2.1
3,064,037	+				-1.8
3,064,037	+				-1.0
3,064,063	+				-1.3
3,064,063	+				-0.9
3,064,064	-				-0.4
3,064,064	-				-1.8
3,064,064	-				-2.7
3,064,080	+				-2.4
3,064,080	+				-0.4
3,064,080	+				-3.0
3,064,081	-				-0.9
3,064,169	+		DDA3937_RS13435	0.12	-0.9
3,064,169	+		DDA3937_RS13435	0.12	-1.4
3,064,169	+		DDA3937_RS13435	0.12	-1.2
3,064,169	+		DDA3937_RS13435	0.12	-0.8
3,064,169	+		DDA3937_RS13435	0.12	+0.2
3,064,170	-		DDA3937_RS13435	0.12	-1.3
3,064,170	-		DDA3937_RS13435	0.12	-2.6
3,064,206	+		DDA3937_RS13435	0.14	-0.2
3,064,206	+		DDA3937_RS13435	0.14	-0.5
3,064,207	-		DDA3937_RS13435	0.14	-1.5
3,064,207	-		DDA3937_RS13435	0.14	-1.0
3,064,209	+		DDA3937_RS13435	0.14	+0.9
3,064,209	+		DDA3937_RS13435	0.14	-1.4
3,064,209	+		DDA3937_RS13435	0.14	-0.5
3,064,209	+		DDA3937_RS13435	0.14	-1.8
3,064,209	+		DDA3937_RS13435	0.14	-0.5
3,064,209	+		DDA3937_RS13435	0.14	-1.0
3,064,210	-		DDA3937_RS13435	0.14	-1.2
3,064,210	-		DDA3937_RS13435	0.14	-0.5
3,064,210	-		DDA3937_RS13435	0.14	-1.0
3,064,210	-		DDA3937_RS13435	0.14	-1.1
3,064,327	-		DDA3937_RS13435	0.20	-1.1
3,064,327	-		DDA3937_RS13435	0.20	-1.5
3,064,327	-		DDA3937_RS13435	0.20	-1.5
3,064,327	-		DDA3937_RS13435	0.20	-0.2
3,064,327	-		DDA3937_RS13435	0.20	-1.6
3,064,327	-				-0.1
3,064,327	-		DDA3937_RS13435	0.20	-1.1
3,064,327	-		DDA3937_RS13435	0.20	-0.3
3,064,451	+		DDA3937_RS13435	0.27	-2.5
3,064,451	+		DDA3937_RS13435	0.27	-1.1
3,064,451	+		DDA3937_RS13435	0.27	-1.3
3,064,452	-		DDA3937_RS13435	0.27	-0.5
3,064,506	+		DDA3937_RS13435	0.30	-2.1
3,064,506	+		DDA3937_RS13435	0.30	-1.2
3,064,510	-		DDA3937_RS13435	0.30	-3.2
3,064,535	+		DDA3937_RS13435	0.31	-1.0
3,064,536	+		DDA3937_RS13435	0.31	+0.3
3,064,536	+		DDA3937_RS13435	0.31	-1.5
3,064,536	+		DDA3937_RS13435	0.31	-2.3
3,064,537	-		DDA3937_RS13435	0.31	-0.3
3,064,537	-		DDA3937_RS13435	0.31	-1.7
3,064,538	+		DDA3937_RS13435	0.31	-2.1
3,064,538	+		DDA3937_RS13435	0.31	-2.8
3,064,538	+		DDA3937_RS13435	0.31	-1.6
3,064,538	+		DDA3937_RS13435	0.31	-2.0
3,064,538	+		DDA3937_RS13435	0.31	-2.0
3,064,539	-		DDA3937_RS13435	0.31	-2.0
3,064,539	-		DDA3937_RS13435	0.31	-0.2
3,064,539	-		DDA3937_RS13435	0.31	-1.7
3,064,556	+		DDA3937_RS13435	0.32	-1.1
3,064,556	+		DDA3937_RS13435	0.32	-2.3
3,064,556	+		DDA3937_RS13435	0.32	-1.1
3,064,556	+		DDA3937_RS13435	0.32	-0.3
3,064,556	+		DDA3937_RS13435	0.32	-1.4
3,064,557	-		DDA3937_RS13435	0.32	-2.1
3,064,557	-		DDA3937_RS13435	0.32	-1.2
3,064,593	+		DDA3937_RS13435	0.34	-2.0
3,064,594	-		DDA3937_RS13435	0.34	-1.2
3,064,683	+		DDA3937_RS13435	0.39	-2.2
3,064,683	+		DDA3937_RS13435	0.39	-0.8
3,064,781	+		DDA3937_RS13435	0.44	-1.9
3,064,782	-		DDA3937_RS13435	0.44	+1.0
3,064,793	+		DDA3937_RS13435	0.45	-2.1
3,064,793	+		DDA3937_RS13435	0.45	-0.3
3,064,794	-		DDA3937_RS13435	0.45	-2.3
3,064,798	-		DDA3937_RS13435	0.45	-1.9
3,064,808	+		DDA3937_RS13435	0.45	+0.5
3,064,837	-		DDA3937_RS13435	0.47	-0.6
3,065,080	-		DDA3937_RS13435	0.59	-1.1
3,065,080	-		DDA3937_RS13435	0.59	-0.4
3,065,081	+		DDA3937_RS13435	0.59	-2.1
3,065,082	-		DDA3937_RS13435	0.60	-1.7
3,065,082	-		DDA3937_RS13435	0.60	-1.4
3,065,082	-		DDA3937_RS13435	0.60	-2.1
3,065,133	+		DDA3937_RS13435	0.62	-1.0
3,065,133	+		DDA3937_RS13435	0.62	-1.2
3,065,133	+				-1.1
3,065,134	-		DDA3937_RS13435	0.62	-1.5
3,065,134	-		DDA3937_RS13435	0.62	-3.2
3,065,134	-		DDA3937_RS13435	0.62	-0.9
3,065,134	-		DDA3937_RS13435	0.62	-2.2
3,065,138	+		DDA3937_RS13435	0.62	+0.1
3,065,138	+		DDA3937_RS13435	0.62	-0.5
3,065,138	+		DDA3937_RS13435	0.62	-2.1
3,065,139	-		DDA3937_RS13435	0.63	-1.4
3,065,186	+		DDA3937_RS13435	0.65	-3.0
3,065,186	+		DDA3937_RS13435	0.65	-0.8
3,065,187	-		DDA3937_RS13435	0.65	-1.1
3,065,229	+		DDA3937_RS13435	0.67	-1.1
3,065,230	-		DDA3937_RS13435	0.67	-1.1
3,065,230	-		DDA3937_RS13435	0.67	-1.8
3,065,230	-		DDA3937_RS13435	0.67	-2.1
3,065,230	-		DDA3937_RS13435	0.67	-1.5
3,065,230	-		DDA3937_RS13435	0.67	-2.5
3,065,230	-		DDA3937_RS13435	0.67	+0.5
3,065,325	+		DDA3937_RS13435	0.72	-1.2
3,065,345	+		DDA3937_RS13435	0.73	-1.4
3,065,345	+		DDA3937_RS13435	0.73	-0.3
3,065,345	+		DDA3937_RS13435	0.73	-3.3
3,065,345	+		DDA3937_RS13435	0.73	-1.1
3,065,345	+		DDA3937_RS13435	0.73	-0.9
3,065,345	+		DDA3937_RS13435	0.73	-1.1
3,065,346	-		DDA3937_RS13435	0.73	-0.7
3,065,346	-		DDA3937_RS13435	0.73	-1.4
3,065,346	-		DDA3937_RS13435	0.73	-1.0
3,065,346	-				+0.5
3,065,346	-		DDA3937_RS13435	0.73	-1.3
3,065,346	-		DDA3937_RS13435	0.73	-2.5
3,065,349	+		DDA3937_RS13435	0.73	-2.7
3,065,349	+		DDA3937_RS13435	0.73	-1.5
3,065,349	+		DDA3937_RS13435	0.73	-1.2
3,065,349	+				+1.1
3,065,350	-		DDA3937_RS13435	0.73	-1.2
3,065,350	-		DDA3937_RS13435	0.73	+0.1
3,065,350	-		DDA3937_RS13435	0.73	-1.4
3,065,350	-		DDA3937_RS13435	0.73	-1.2
3,065,350	-		DDA3937_RS13435	0.73	-1.1
3,065,352	+		DDA3937_RS13435	0.74	-1.1
3,065,473	+				-0.5
3,065,473	+		DDA3937_RS13435	0.80	-0.1
3,065,473	+				-1.1
3,065,473	+		DDA3937_RS13435	0.80	+1.1
3,065,474	-		DDA3937_RS13435	0.80	+0.3
3,065,571	+		DDA3937_RS13435	0.85	-3.5
3,065,571	+		DDA3937_RS13435	0.85	-2.1
3,065,571	+		DDA3937_RS13435	0.85	-1.1
3,065,571	+		DDA3937_RS13435	0.85	-2.1
3,065,571	+		DDA3937_RS13435	0.85	-1.7
3,065,571	+		DDA3937_RS13435	0.85	-0.1
3,065,572	-		DDA3937_RS13435	0.85	-0.7
3,065,575	+		DDA3937_RS13435	0.85	-1.9
3,065,576	-		DDA3937_RS13435	0.85	-1.1
3,065,576	-		DDA3937_RS13435	0.85	-1.5
3,065,576	-		DDA3937_RS13435	0.85	-0.2
3,065,576	-		DDA3937_RS13435	0.85	-1.1
3,065,576	-		DDA3937_RS13435	0.85	-1.9
3,065,576	-		DDA3937_RS13435	0.85	-1.5
3,065,576	-		DDA3937_RS13435	0.85	-0.8
3,065,576	-		DDA3937_RS13435	0.85	-0.5
3,065,594	+		DDA3937_RS13435	0.86	-0.7
3,065,595	-		DDA3937_RS13435	0.86	-1.3
3,065,595	-		DDA3937_RS13435	0.86	-2.4
3,065,595	-		DDA3937_RS13435	0.86	-0.7
3,065,597	+		DDA3937_RS13435	0.86	+0.2
3,065,598	-		DDA3937_RS13435	0.86	-1.2
3,065,598	-		DDA3937_RS13435	0.86	-1.4
3,065,598	-		DDA3937_RS13435	0.86	-1.1
3,065,643	+		DDA3937_RS13435	0.89	-1.0
3,065,643	+		DDA3937_RS13435	0.89	+0.5
3,065,644	-		DDA3937_RS13435	0.89	-1.3
3,065,649	+		DDA3937_RS13435	0.89	-0.6
3,065,649	+		DDA3937_RS13435	0.89	-0.1
3,065,650	-		DDA3937_RS13435	0.89	-1.4
3,065,650	-		DDA3937_RS13435	0.89	-1.2
3,065,660	+		DDA3937_RS13435	0.90	-1.5
3,065,660	+		DDA3937_RS13435	0.90	-1.2
3,065,660	+		DDA3937_RS13435	0.90	-0.5
3,065,661	-		DDA3937_RS13435	0.90	-2.1
3,065,703	-				-0.8
3,065,716	-				-1.1
3,065,757	+				-1.1
3,065,758	-				-1.4
3,065,759	+				-0.6
3,065,791	-				-2.5
3,065,803	+				-0.5
3,065,804	-				-1.8
3,065,804	-				-1.4
3,065,804	-				-1.7
3,065,824	+				-2.7
3,065,874	-				-0.1
3,065,874	-				-0.9
3,065,874	-				+0.4
3,065,874	-				-1.6
3,065,879	+				+0.0
3,065,879	+				-1.1
3,065,879	+				-1.0
3,065,880	-				-1.1
3,065,880	-				+0.3
3,065,901	+				-0.8
3,065,901	+				-2.3
3,065,902	-				-0.8
3,065,902	-				-1.4
3,065,902	-				+0.1
3,065,905	+				-1.8
3,065,905	+				-0.9
3,065,905	+				-0.5
3,065,906	-				+0.7
3,065,906	-				-0.1
3,065,906	-				+0.4
3,065,936	+				-1.0
3,065,941	+				-2.1
3,065,942	-				+1.5
3,065,948	+				-1.1
3,065,948	+				-0.9
3,065,948	+				-2.6
3,065,948	+				+0.4
3,065,948	+				-0.1
3,065,948	+				-1.7
3,065,948	+				-2.5
3,065,948	+				-0.2
3,065,948	+				-1.8
3,065,948	+				-1.0
3,065,948	+				-1.5
3,065,949	-				-0.5
3,065,949	-				+0.1
3,065,949	-				-0.8
3,065,949	-				+0.7
3,065,949	-				-1.5
3,065,949	-				+0.6
3,065,949	-				+2.5
3,065,949	-				+0.1
3,065,949	-				-1.2
3,065,949	-				-0.1
3,065,950	+				+0.5
3,065,950	+				-1.0
3,065,950	+				-0.7
3,065,950	+				-2.8
3,065,950	+				-1.1
3,065,950	+				-0.5
3,065,950	+				-0.5
3,065,951	-				+0.1
3,065,951	-				-0.4
3,065,951	-				-2.5
3,065,951	-				-1.8
3,065,951	-				-0.5
3,065,951	-				-1.8
3,065,951	-				+0.8
3,065,951	-				-0.3
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3,066,754	-		DDA3937_RS13440	0.81	-0.9