Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13370

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,052,606	-		DDA3937_RS13365	0.43	-1.0
3,052,609	+		DDA3937_RS13365	0.43	-0.5
3,052,609	+		DDA3937_RS13365	0.43	-0.9
3,052,610	-		DDA3937_RS13365	0.43	+0.5
3,052,720	+		DDA3937_RS13365	0.49	-2.8
3,052,720	+		DDA3937_RS13365	0.49	-0.4
3,052,720	+		DDA3937_RS13365	0.49	+0.5
3,052,720	+		DDA3937_RS13365	0.49	-1.1
3,052,721	-		DDA3937_RS13365	0.49	-1.5
3,052,721	-		DDA3937_RS13365	0.49	-1.5
3,052,729	-		DDA3937_RS13365	0.50	+0.6
3,052,729	-		DDA3937_RS13365	0.50	-1.5
3,052,754	+		DDA3937_RS13365	0.51	-0.4
3,052,755	-		DDA3937_RS13365	0.51	-1.1
3,052,755	-		DDA3937_RS13365	0.51	-1.5
3,052,755	-		DDA3937_RS13365	0.51	-1.2
3,052,802	+		DDA3937_RS13365	0.54	-0.2
3,052,802	+		DDA3937_RS13365	0.54	-0.2
3,052,802	+		DDA3937_RS13365	0.54	-0.4
3,052,802	+		DDA3937_RS13365	0.54	-0.1
3,052,802	+		DDA3937_RS13365	0.54	-1.6
3,052,802	+		DDA3937_RS13365	0.54	-0.5
3,052,803	-		DDA3937_RS13365	0.54	-1.2
3,052,803	-		DDA3937_RS13365	0.54	-0.1
3,052,803	-		DDA3937_RS13365	0.54	-0.4
3,052,803	-		DDA3937_RS13365	0.54	-0.5
3,052,857	+		DDA3937_RS13365	0.57	-0.0
3,052,884	+		DDA3937_RS13365	0.59	-0.3
3,052,884	+		DDA3937_RS13365	0.59	-0.6
3,052,905	+		DDA3937_RS13365	0.60	-0.9
3,052,944	+		DDA3937_RS13365	0.62	-0.5
3,052,944	+		DDA3937_RS13365	0.62	-0.2
3,052,944	+		DDA3937_RS13365	0.62	-1.8
3,052,945	-		DDA3937_RS13365	0.62	-1.2
3,052,945	-		DDA3937_RS13365	0.62	-0.5
3,052,981	+		DDA3937_RS13365	0.64	-1.3
3,052,981	+		DDA3937_RS13365	0.64	-0.3
3,052,981	+		DDA3937_RS13365	0.64	+0.1
3,052,981	+		DDA3937_RS13365	0.64	-1.1
3,052,981	+		DDA3937_RS13365	0.64	+0.3
3,052,982	-		DDA3937_RS13365	0.65	-2.0
3,053,011	+		DDA3937_RS13365	0.66	+0.5
3,053,011	+		DDA3937_RS13365	0.66	-0.8
3,053,012	-		DDA3937_RS13365	0.66	-0.7
3,053,012	-		DDA3937_RS13365	0.66	-0.4
3,053,012	-		DDA3937_RS13365	0.66	-1.1
3,053,089	-		DDA3937_RS13365	0.71	+0.2
3,053,092	+		DDA3937_RS13365	0.71	-1.5
3,053,092	+		DDA3937_RS13365	0.71	-0.7
3,053,093	-		DDA3937_RS13365	0.71	-1.5
3,053,093	-		DDA3937_RS13365	0.71	+0.5
3,053,093	-		DDA3937_RS13365	0.71	-1.1
3,053,093	-		DDA3937_RS13365	0.71	-0.5
3,053,093	-		DDA3937_RS13365	0.71	+0.5
3,053,214	+		DDA3937_RS13365	0.78	-2.9
3,053,217	+		DDA3937_RS13365	0.78	-0.7
3,053,217	+		DDA3937_RS13365	0.78	-0.3
3,053,217	+		DDA3937_RS13365	0.78	-0.3
3,053,217	+		DDA3937_RS13365	0.78	-0.5
3,053,217	+		DDA3937_RS13365	0.78	+1.2
3,053,217	+		DDA3937_RS13365	0.78	-0.8
3,053,217	+		DDA3937_RS13365	0.78	-0.3
3,053,218	-		DDA3937_RS13365	0.78	-0.1
3,053,218	-		DDA3937_RS13365	0.78	-0.3
3,053,218	-		DDA3937_RS13365	0.78	+0.5
3,053,218	-		DDA3937_RS13365	0.78	-0.7
3,053,218	-		DDA3937_RS13365	0.78	+0.2
3,053,218	-		DDA3937_RS13365	0.78	-0.5
3,053,218	-		DDA3937_RS13365	0.78	-0.5
3,053,218	-		DDA3937_RS13365	0.78	-0.8
3,053,300	+		DDA3937_RS13365	0.83	-1.0
3,053,300	+		DDA3937_RS13365	0.83	-0.2
3,053,346	+				+2.1
3,053,346	+		DDA3937_RS13365	0.86	+1.4
3,053,346	+		DDA3937_RS13365	0.86	-1.1
3,053,451	+				-0.0
3,053,451	+				-0.4
3,053,451	+				-0.9
3,053,562	-				-2.3
3,053,588	+				-0.4
3,053,588	+				+1.5
3,053,588	+				+0.2
3,053,588	+				-1.8
3,053,589	-				-0.5
3,053,589	-				-0.2
3,053,589	-				+0.2
3,053,589	-				-0.1
3,053,589	-				-0.5
3,053,589	-				-1.1
3,053,604	-				-0.7
3,053,623	+				+0.5
3,053,623	+				-2.1
3,053,664	-				-0.3
3,053,699	+		DDA3937_RS13370	0.11	+0.5
3,053,700	-		DDA3937_RS13370	0.11	+0.3
3,053,781	+		DDA3937_RS13370	0.19	+0.2
3,053,781	+		DDA3937_RS13370	0.19	-0.0
3,053,782	-		DDA3937_RS13370	0.19	-1.8
3,053,782	-		DDA3937_RS13370	0.19	-0.3
3,053,782	-		DDA3937_RS13370	0.19	-1.5
3,053,811	+		DDA3937_RS13370	0.22	-0.3
3,053,811	+		DDA3937_RS13370	0.22	-0.4
3,053,811	+		DDA3937_RS13370	0.22	-1.1
3,053,812	-		DDA3937_RS13370	0.22	-1.8
3,053,812	-		DDA3937_RS13370	0.22	-1.5
3,053,812	-		DDA3937_RS13370	0.22	-1.1
3,053,812	-		DDA3937_RS13370	0.22	-1.3
3,053,821	-		DDA3937_RS13370	0.23	-0.3
3,053,874	-		DDA3937_RS13370	0.29	+0.7
3,054,047	+		DDA3937_RS13370	0.46	-0.8
3,054,047	+		DDA3937_RS13370	0.46	-0.7
3,054,048	-		DDA3937_RS13370	0.46	-0.3
3,054,048	-		DDA3937_RS13370	0.46	+0.9
3,054,056	+		DDA3937_RS13370	0.47	-1.2
3,054,057	-		DDA3937_RS13370	0.47	-0.5
3,054,057	-		DDA3937_RS13370	0.47	-1.5
3,054,176	+		DDA3937_RS13370	0.59	-2.2
3,054,192	-		DDA3937_RS13370	0.61	-0.3
3,054,273	-		DDA3937_RS13370	0.69	-0.9
3,054,273	-		DDA3937_RS13370	0.69	-0.1
3,054,473	-		DDA3937_RS13370	0.89	-1.1
3,054,476	+		DDA3937_RS13370	0.89	+0.0
3,054,476	+		DDA3937_RS13370	0.89	-0.6
3,054,476	+		DDA3937_RS13370	0.89	-0.9
3,054,476	+		DDA3937_RS13370	0.89	-0.7
3,054,476	+		DDA3937_RS13370	0.89	-0.5
3,054,476	+		DDA3937_RS13370	0.89	-2.3
3,054,476	+		DDA3937_RS13370	0.89	-0.4
3,054,476	+		DDA3937_RS13370	0.89	+1.1
3,054,476	+		DDA3937_RS13370	0.89	+0.9
3,054,476	+		DDA3937_RS13370	0.89	-1.3
3,054,476	+		DDA3937_RS13370	0.89	+0.1
3,054,476	+		DDA3937_RS13370	0.89	-0.7
3,054,476	+		DDA3937_RS13370	0.89	-0.3
3,054,477	-		DDA3937_RS13370	0.89	-1.1
3,054,477	-		DDA3937_RS13370	0.89	-0.2
3,054,477	-		DDA3937_RS13370	0.89	-2.5
3,054,477	-		DDA3937_RS13370	0.89	-1.4
3,054,477	-		DDA3937_RS13370	0.89	-0.7
3,054,477	-		DDA3937_RS13370	0.89	-0.7
3,054,477	-		DDA3937_RS13370	0.89	-1.5
3,054,477	-		DDA3937_RS13370	0.89	-0.4
3,054,477	-		DDA3937_RS13370	0.89	+0.3
3,054,477	-		DDA3937_RS13370	0.89	-0.1
3,054,477	-		DDA3937_RS13370	0.89	-0.9
3,054,477	-		DDA3937_RS13370	0.89	-1.0
3,054,477	-		DDA3937_RS13370	0.89	-1.0
3,054,520	+				-0.5
3,054,520	+				-1.3
3,054,520	+				-1.3
3,054,520	+				-1.2
3,054,520	+				+0.1
3,054,521	-				-1.5
3,054,579	+				-0.8
3,054,580	-				-1.1
3,054,723	+		DDA3937_RS13375	0.21	-2.1
3,054,998	+		DDA3937_RS13375	0.58	-2.1
3,055,064	+		DDA3937_RS13375	0.67	-1.0
3,055,064	+		DDA3937_RS13375	0.67	-1.8
3,055,064	+		DDA3937_RS13375	0.67	-1.6
3,055,064	+		DDA3937_RS13375	0.67	+0.8
3,055,064	+		DDA3937_RS13375	0.67	-0.7
3,055,065	-		DDA3937_RS13375	0.67	-0.1
3,055,065	-		DDA3937_RS13375	0.67	-2.8
3,055,119	-		DDA3937_RS13375	0.74	-0.5
3,055,161	+		DDA3937_RS13375	0.80	-0.5
3,055,343	+				+0.5
3,055,343	+				-1.1
3,055,344	-				-0.5
3,055,344	-				-0.8
3,055,344	-				-1.2
3,055,364	+				-0.9
3,055,373	+				-0.6
3,055,373	+				-0.7
3,055,373	+				-1.5
3,055,373	+				-0.3
3,055,374	-				-1.1
3,055,374	-				-0.4
3,055,504	+		DDA3937_RS13380	0.14	-1.0
3,055,505	-		DDA3937_RS13380	0.14	-0.7
3,055,505	-		DDA3937_RS13380	0.14	-0.3
3,055,505	-		DDA3937_RS13380	0.14	-2.0