Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13340

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,046,224	+				+1.0
3,046,301	+				-1.5
3,046,301	+				+0.5
3,046,302	-				+0.2
3,046,302	-				+0.5
3,046,317	-				-0.1
3,046,328	+				-0.5
3,046,328	+				-0.2
3,046,328	+				-0.8
3,046,328	+				+0.1
3,046,329	-				+0.6
3,046,329	-				-0.2
3,046,329	-				+0.2
3,046,329	-				+0.1
3,046,329	-				+0.8
3,046,331	+				-0.2
3,046,331	+				+0.0
3,046,331	+				-1.2
3,046,331	+				+1.2
3,046,331	+				-0.7
3,046,331	+				-1.7
3,046,332	-				+0.5
3,046,333	+				+0.5
3,046,335	+				-0.2
3,046,335	+				-0.7
3,046,336	-				+0.3
3,046,336	-				+0.3
3,046,374	-				-2.8
3,046,375	+				+0.5
3,046,375	+				-0.1
3,046,376	-				-0.5
3,046,376	-				+0.2
3,046,425	+				-0.7
3,046,426	-				+0.5
3,046,450	-				+0.1
3,046,450	-				-0.3
3,046,450	-				+0.3
3,046,681	-		DDA3937_RS13335	0.27	-1.1
3,046,681	-		DDA3937_RS13335	0.27	-0.1
3,046,747	+		DDA3937_RS13335	0.41	+1.2
3,047,152	+				+0.5
3,047,224	+				-1.5
3,047,224	+				+0.1
3,047,224	+				-1.4
3,047,225	-				-0.7
3,047,275	-				-0.8
3,047,275	-				-1.7
3,047,282	+				-0.7
3,047,282	+				-0.8
3,047,322	+		DDA3937_RS13340	0.12	-1.5
3,047,322	+		DDA3937_RS13340	0.12	-2.3
3,047,323	-		DDA3937_RS13340	0.12	-1.4
3,047,358	-		DDA3937_RS13340	0.16	-1.7
3,047,358	-		DDA3937_RS13340	0.16	-1.1
3,047,405	+		DDA3937_RS13340	0.22	-3.3
3,047,406	-		DDA3937_RS13340	0.22	+0.5
3,047,406	-		DDA3937_RS13340	0.22	-0.3
3,047,495	+		DDA3937_RS13340	0.32	-2.1
3,047,510	+		DDA3937_RS13340	0.34	-1.7
3,047,528	+		DDA3937_RS13340	0.36	-1.8
3,047,556	-		DDA3937_RS13340	0.39	-0.0
3,047,556	-		DDA3937_RS13340	0.39	-2.2
3,047,577	-		DDA3937_RS13340	0.42	-1.5
3,047,741	+		DDA3937_RS13340	0.61	-2.3
3,047,753	+		DDA3937_RS13340	0.63	-1.5
3,047,760	-		DDA3937_RS13340	0.63	-0.0
3,047,778	+		DDA3937_RS13340	0.66	-1.2
3,047,828	+		DDA3937_RS13340	0.72	-0.7
3,047,873	+		DDA3937_RS13340	0.77	-1.8
3,047,874	-		DDA3937_RS13340	0.77	-2.0
3,047,984	+				+0.5
3,047,984	+				-1.0
3,048,041	+				-1.4
3,048,041	+				-1.2
3,048,041	+				-1.3
3,048,041	+				+0.1
3,048,041	+				-1.5
3,048,042	-				-0.6
3,048,042	-				-1.0
3,048,042	-				-0.5
3,048,042	-				-1.0
3,048,042	-				-1.3
3,048,042	-				-1.5
3,048,042	-				-0.5
3,048,042	-				-2.9
3,048,042	-				-0.7
3,048,042	-				-1.8
3,048,047	+				-1.5
3,048,048	-				-1.2
3,048,050	+				-1.8
3,048,050	+				-1.8
3,048,050	+				-1.1
3,048,051	-				-1.0
3,048,051	-				-1.3
3,048,065	+				+0.1
3,048,065	+				+0.1
3,048,066	-				-0.9
3,048,066	-				-0.9
3,048,069	+				-1.0
3,048,069	+				-1.7
3,048,069	+				-0.8
3,048,087	-				+0.1
3,048,090	-				-1.6
3,048,090	-				-1.3
3,048,131	-				-0.8
3,048,148	+				+0.1
3,048,148	+				-3.2
3,048,149	-				+0.0
3,048,161	-				-0.5
3,048,161	-				+0.4
3,048,224	+				-0.5
3,048,224	+				+0.2
3,048,229	+				+1.3
3,048,230	-				-0.2
3,048,282	-				+0.3
3,048,282	-				-0.5
3,048,282	-				+0.4
3,048,295	-				-0.8
3,048,325	-				-0.7
3,048,325	-				+0.3
3,048,326	+				-0.5
3,048,326	+				-0.9
3,048,326	+				-0.3
3,048,326	+				-0.3
3,048,326	+				-0.4
3,048,327	-				-1.4
3,048,331	+				-0.4
3,048,331	+				-0.5
3,048,332	-				-0.5
3,048,333	+				+0.5
3,048,334	-				+0.5
3,048,338	+				+0.5
3,048,338	+				+0.0
3,048,338	+				+1.1
3,048,338	+				+0.8
3,048,338	+				-0.8
3,048,338	+				-0.2
3,048,338	+				-1.5
3,048,339	-				+0.5
3,048,339	-				-0.1
3,048,339	-				-0.8
3,048,339	-				+0.1
3,048,339	-				+1.7
3,048,339	-				-0.9
3,048,348	-				+0.5
3,048,355	+				+0.2
3,048,355	+				-1.4
3,048,356	-				+0.4
3,048,356	-				+0.7
3,048,356	-				+1.1
3,048,391	+				-1.8
3,048,405	+				-1.1
3,048,405	+				-0.6
3,048,405	+				-0.4
3,048,438	+				-0.7
3,048,438	+				+1.5
3,048,439	-				-0.5
3,048,439	-				+0.2
3,048,453	+				-0.8
3,048,453	+				+0.8
3,048,453	+				-0.5
3,048,453	+				-0.2
3,048,453	+				-0.5
3,048,454	-				-0.3
3,048,454	-				+1.1
3,048,454	-				+0.2
3,048,454	-				-0.3
3,048,457	+				+0.1
3,048,457	+				+0.0
3,048,457	+				-0.3
3,048,457	+				+0.5
3,048,457	+				-0.4
3,048,457	+				+0.5
3,048,457	+				+1.0
3,048,458	-				+1.5
3,048,458	-				-2.3
3,048,458	-				+1.1
3,048,458	-				-1.1
3,048,458	-				-0.2
3,048,458	-				+0.2
3,048,458	-				+0.1
3,048,458	-				-0.1
3,048,458	-				-0.6
3,048,475	+				+1.6
3,048,475	+				-1.7
3,048,475	+				-0.1
3,048,476	-				+1.0
3,048,476	-				-1.5
3,048,476	-				-0.1
3,048,555	+				-0.0
3,048,555	+				-0.9
3,048,555	+				+0.5
3,048,556	-				-0.4
3,048,622	+				+1.1
3,048,635	-				-0.2
3,048,639	+				-1.0
3,048,660	+				-0.5
3,048,661	-				+1.0
3,048,661	-				-2.1
3,048,705	-				-0.0
3,048,711	-				-0.3
3,048,711	-				-0.2
3,048,732	-				+0.2
3,048,754	+				-2.7
3,048,755	-				-0.7
3,048,755	-				-1.8
3,048,758	+				-0.6
3,048,758	+				+0.5
3,048,758	+				+1.1
3,048,758	+				+0.1
3,048,759	-				+0.5
3,048,770	+				+2.1
3,048,771	-				-1.4
3,048,811	+				-1.1
3,048,812	-				-0.2
3,048,852	+				-1.0
3,048,852	+				-1.1
3,048,853	-				-0.0
3,048,853	-				-1.5
3,048,853	-				-0.1
3,048,855	-				+0.5
3,048,855	-				-0.3
3,048,860	+				-0.5
3,048,896	+		DDA3937_RS13345	0.13	-1.5
3,048,896	+		DDA3937_RS13345	0.13	-2.1
3,048,935	+		DDA3937_RS13345	0.15	-2.3
3,049,020	-		DDA3937_RS13345	0.21	-0.6
3,049,038	+		DDA3937_RS13345	0.22	+0.8
3,049,038	+		DDA3937_RS13345	0.22	-0.5
3,049,038	+		DDA3937_RS13345	0.22	-1.4
3,049,039	-		DDA3937_RS13345	0.23	-1.4
3,049,039	-		DDA3937_RS13345	0.23	+0.9
3,049,039	-		DDA3937_RS13345	0.23	-0.3
3,049,039	-		DDA3937_RS13345	0.23	-0.8
3,049,058	+		DDA3937_RS13345	0.24	-1.1
3,049,059	-		DDA3937_RS13345	0.24	+0.5
3,049,059	-		DDA3937_RS13345	0.24	-0.8
3,049,059	-		DDA3937_RS13345	0.24	+0.2