Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13325

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,040,629	-		DDA3937_RS13320	0.27	-1.1
3,040,629	-		DDA3937_RS13320	0.27	-0.5
3,040,674	-		DDA3937_RS13320	0.31	+0.5
3,040,675	+		DDA3937_RS13320	0.31	-3.8
3,040,675	+		DDA3937_RS13320	0.31	-0.9
3,040,675	+		DDA3937_RS13320	0.31	-0.7
3,040,675	+		DDA3937_RS13320	0.31	-0.4
3,040,675	+		DDA3937_RS13320	0.31	-1.1
3,040,675	+		DDA3937_RS13320	0.31	-1.5
3,040,675	+		DDA3937_RS13320	0.31	-1.5
3,040,675	+		DDA3937_RS13320	0.31	-0.1
3,040,676	-		DDA3937_RS13320	0.31	-0.5
3,040,676	-		DDA3937_RS13320	0.31	-1.0
3,040,676	-		DDA3937_RS13320	0.31	-2.7
3,040,734	+		DDA3937_RS13320	0.36	-2.9
3,040,762	+		DDA3937_RS13320	0.38	-1.1
3,040,762	+		DDA3937_RS13320	0.38	-2.1
3,040,762	+		DDA3937_RS13320	0.38	-3.0
3,040,763	-		DDA3937_RS13320	0.38	-1.6
3,040,763	-		DDA3937_RS13320	0.38	-0.4
3,040,763	-		DDA3937_RS13320	0.38	-0.1
3,040,763	-		DDA3937_RS13320	0.38	-1.3
3,040,782	+		DDA3937_RS13320	0.40	-0.5
3,040,782	+		DDA3937_RS13320	0.40	-0.5
3,040,782	+		DDA3937_RS13320	0.40	-2.2
3,040,782	+		DDA3937_RS13320	0.40	-1.3
3,040,783	-		DDA3937_RS13320	0.40	-2.7
3,040,783	-		DDA3937_RS13320	0.40	-0.5
3,040,783	-		DDA3937_RS13320	0.40	-1.0
3,040,848	+		DDA3937_RS13320	0.45	-2.3
3,040,849	-		DDA3937_RS13320	0.45	-3.4
3,040,865	+		DDA3937_RS13320	0.47	-1.1
3,040,877	+		DDA3937_RS13320	0.48	+1.5
3,040,920	+		DDA3937_RS13320	0.51	-1.4
3,040,920	+		DDA3937_RS13320	0.51	-1.7
3,040,963	+		DDA3937_RS13320	0.55	+0.1
3,040,963	+		DDA3937_RS13320	0.55	+0.3
3,040,964	-		DDA3937_RS13320	0.55	-1.0
3,040,964	-		DDA3937_RS13320	0.55	-0.2
3,040,964	-		DDA3937_RS13320	0.55	-1.1
3,041,006	+		DDA3937_RS13320	0.59	-0.4
3,041,006	+		DDA3937_RS13320	0.59	+0.1
3,041,043	+		DDA3937_RS13320	0.62	-1.4
3,041,044	-		DDA3937_RS13320	0.62	+0.5
3,041,046	+		DDA3937_RS13320	0.62	-1.1
3,041,060	+		DDA3937_RS13320	0.63	-0.3
3,041,060	+		DDA3937_RS13320	0.63	-1.1
3,041,060	+		DDA3937_RS13320	0.63	-1.1
3,041,060	+		DDA3937_RS13320	0.63	-0.1
3,041,060	+		DDA3937_RS13320	0.63	-0.5
3,041,060	+				+0.5
3,041,060	+		DDA3937_RS13320	0.63	-0.9
3,041,060	+		DDA3937_RS13320	0.63	-0.3
3,041,060	+		DDA3937_RS13320	0.63	-0.2
3,041,061	-		DDA3937_RS13320	0.63	+0.7
3,041,061	-		DDA3937_RS13320	0.63	-1.3
3,041,061	-		DDA3937_RS13320	0.63	-0.1
3,041,122	+		DDA3937_RS13320	0.69	-0.3
3,041,149	-		DDA3937_RS13320	0.71	-1.5
3,041,149	-		DDA3937_RS13320	0.71	-0.4
3,041,149	-		DDA3937_RS13320	0.71	-1.5
3,041,159	+				+0.5
3,041,160	-		DDA3937_RS13320	0.72	-0.5
3,041,160	-		DDA3937_RS13320	0.72	-1.5
3,041,223	+		DDA3937_RS13320	0.77	-0.8
3,041,259	-		DDA3937_RS13320	0.80	-1.6
3,041,287	-		DDA3937_RS13320	0.82	-2.0
3,041,287	-		DDA3937_RS13320	0.82	+0.9
3,041,295	+		DDA3937_RS13320	0.83	-0.7
3,041,296	-		DDA3937_RS13320	0.83	+2.0
3,041,296	-		DDA3937_RS13320	0.83	-0.9
3,041,370	+		DDA3937_RS13320	0.90	-1.7
3,041,482	+				-1.4
3,041,482	+				-1.4
3,041,482	+				-0.7
3,041,482	+				-0.1
3,041,482	+				-0.5
3,041,482	+				-1.5
3,041,482	+				-2.4
3,041,482	+				-0.2
3,041,482	+				-1.5
3,041,482	+				+0.5
3,041,482	+				-2.3
3,041,482	+				-1.0
3,041,482	+				-1.0
3,041,483	-				-1.9
3,041,483	-				-0.9
3,041,483	-				-1.1
3,041,483	-				-0.3
3,041,483	-				-0.6
3,041,493	+				-0.8
3,041,493	+				-0.2
3,041,493	+				-1.9
3,041,494	-				-1.5
3,041,494	-				+0.2
3,041,507	+				-1.5
3,041,612	+				+0.8
3,041,612	+				-2.5
3,041,613	-				-0.5
3,041,656	+				-1.7
3,041,656	+				+0.3
3,041,656	+				+0.6
3,041,656	+				-1.3
3,041,738	-		DDA3937_RS13325	0.14	-0.3
3,041,771	-		DDA3937_RS13325	0.16	-0.8
3,041,836	+		DDA3937_RS13325	0.22	-0.8
3,041,836	+				-0.5
3,041,836	+		DDA3937_RS13325	0.22	-1.9
3,041,836	+		DDA3937_RS13325	0.22	-1.3
3,041,837	-		DDA3937_RS13325	0.22	-0.4
3,041,860	+		DDA3937_RS13325	0.24	-0.7
3,041,860	+		DDA3937_RS13325	0.24	-1.5
3,041,861	-		DDA3937_RS13325	0.24	-0.3
3,041,861	-		DDA3937_RS13325	0.24	-2.3
3,041,861	-		DDA3937_RS13325	0.24	-1.4
3,041,861	-		DDA3937_RS13325	0.24	-1.1
3,041,861	-		DDA3937_RS13325	0.24	-2.5
3,041,866	+		DDA3937_RS13325	0.24	-0.9
3,041,866	+		DDA3937_RS13325	0.24	-1.2
3,041,867	-		DDA3937_RS13325	0.25	-1.8
3,041,867	-		DDA3937_RS13325	0.25	-0.5
3,041,867	-		DDA3937_RS13325	0.25	-2.3
3,041,913	-		DDA3937_RS13325	0.28	-1.3
3,041,935	+		DDA3937_RS13325	0.30	-1.3
3,041,936	-		DDA3937_RS13325	0.30	-1.0
3,041,936	-		DDA3937_RS13325	0.30	-1.9
3,041,936	-		DDA3937_RS13325	0.30	+0.1
3,041,944	+		DDA3937_RS13325	0.31	-0.7
3,041,944	+		DDA3937_RS13325	0.31	-1.0
3,041,945	-		DDA3937_RS13325	0.31	-2.3
3,041,945	-		DDA3937_RS13325	0.31	-0.4
3,041,945	-		DDA3937_RS13325	0.31	-3.4
3,041,945	-		DDA3937_RS13325	0.31	-0.3
3,041,948	+		DDA3937_RS13325	0.31	-1.0
3,041,949	-		DDA3937_RS13325	0.32	-0.4
3,041,949	-		DDA3937_RS13325	0.32	-1.1
3,041,949	-		DDA3937_RS13325	0.32	-2.1
3,041,978	+		DDA3937_RS13325	0.34	-0.7
3,041,980	+		DDA3937_RS13325	0.34	-1.2
3,042,035	+		DDA3937_RS13325	0.39	-0.9
3,042,086	-		DDA3937_RS13325	0.43	-1.1
3,042,190	+		DDA3937_RS13325	0.52	-1.9
3,042,244	+		DDA3937_RS13325	0.57	-1.1
3,042,244	+		DDA3937_RS13325	0.57	-0.3
3,042,245	-		DDA3937_RS13325	0.57	-0.1
3,042,276	-		DDA3937_RS13325	0.59	+1.0
3,042,305	+		DDA3937_RS13325	0.62	-0.1
3,042,306	-		DDA3937_RS13325	0.62	-1.4
3,042,310	+		DDA3937_RS13325	0.62	-1.3
3,042,329	+				+0.5
3,042,562	+		DDA3937_RS13325	0.84	-0.5
3,042,562	+		DDA3937_RS13325	0.84	-2.1
3,042,563	-		DDA3937_RS13325	0.84	-0.8
3,042,616	+		DDA3937_RS13325	0.89	-2.3
3,042,616	+		DDA3937_RS13325	0.89	-0.2
3,042,616	+		DDA3937_RS13325	0.89	-1.4
3,042,617	-		DDA3937_RS13325	0.89	-1.3
3,042,643	+				-1.5
3,042,684	+				-1.5
3,042,685	-				-0.5
3,042,688	+				-0.5
3,042,688	+				-2.0
3,042,688	+				-0.6
3,042,688	+				-1.5
3,042,688	+				-1.2
3,042,698	+				-0.5
3,042,698	+				-0.9
3,042,699	-				-1.1
3,042,699	-				-1.6
3,042,725	+				-1.0
3,042,725	+				-1.5
3,042,726	-				-1.7
3,042,735	+				-1.7
3,042,735	+				+0.0
3,042,739	+				-1.8
3,042,739	+				-1.1
3,042,739	+				-1.1
3,042,739	+				-1.6
3,042,739	+				+0.2
3,042,739	+				-0.2
3,042,740	-				+0.1
3,042,740	-				+0.9
3,042,740	-				-0.5
3,042,740	-				-0.2
3,042,758	+				-1.1
3,042,761	+				+0.5
3,042,768	-				-0.1
3,042,824	+				-0.4
3,042,824	+				-0.1
3,042,828	+				-1.5
3,042,829	-				-0.7
3,042,829	-				+0.7
3,042,829	-				+0.5
3,042,829	-				+0.1
3,042,829	-				-1.3
3,042,834	+				-0.9
3,042,834	+				-0.3
3,042,924	+				-0.6
3,042,925	-				-0.1
3,042,929	-				-1.2
3,042,929	-				-1.9
3,042,938	+				-0.9
3,043,021	-				-0.4
3,043,021	-				-0.7
3,043,034	+				-0.5
3,043,034	+				-0.5
3,043,035	-				-0.5
3,043,082	-				-2.7
3,043,183	+		DDA3937_RS13330	0.10	-1.1
3,043,186	-		DDA3937_RS13330	0.10	-1.5
3,043,186	-		DDA3937_RS13330	0.10	-2.1
3,043,191	+		DDA3937_RS13330	0.10	-0.5
3,043,191	+		DDA3937_RS13330	0.10	-1.0
3,043,195	+		DDA3937_RS13330	0.11	-2.2
3,043,195	+		DDA3937_RS13330	0.11	-1.5
3,043,196	-		DDA3937_RS13330	0.11	-1.0
3,043,211	+		DDA3937_RS13330	0.11	-0.8
3,043,212	-		DDA3937_RS13330	0.11	-1.3
3,043,212	-		DDA3937_RS13330	0.11	+0.0
3,043,212	-		DDA3937_RS13330	0.11	-2.0
3,043,212	-		DDA3937_RS13330	0.11	-2.0
3,043,233	+		DDA3937_RS13330	0.12	-3.0
3,043,312	-		DDA3937_RS13330	0.14	-0.8
3,043,338	+		DDA3937_RS13330	0.15	-1.1
3,043,339	-		DDA3937_RS13330	0.15	-1.2
3,043,339	-		DDA3937_RS13330	0.15	+0.6
3,043,339	-		DDA3937_RS13330	0.15	-0.9
3,043,447	-		DDA3937_RS13330	0.18	-0.8
3,043,507	-		DDA3937_RS13330	0.20	+0.0
3,043,524	+		DDA3937_RS13330	0.20	-0.3
3,043,525	-		DDA3937_RS13330	0.20	-2.2
3,043,525	-		DDA3937_RS13330	0.20	-1.3
3,043,546	-		DDA3937_RS13330	0.21	+0.3
3,043,546	-		DDA3937_RS13330	0.21	+0.5
3,043,572	+		DDA3937_RS13330	0.21	-1.9
3,043,572	+		DDA3937_RS13330	0.21	-0.8
3,043,572	+		DDA3937_RS13330	0.21	-0.5
3,043,573	-		DDA3937_RS13330	0.21	-0.6
3,043,573	-		DDA3937_RS13330	0.21	-1.4
3,043,573	-		DDA3937_RS13330	0.21	+1.8
3,043,573	-		DDA3937_RS13330	0.21	-1.2
3,043,573	-		DDA3937_RS13330	0.21	-1.5
3,043,573	-		DDA3937_RS13330	0.21	+0.1
3,043,573	-		DDA3937_RS13330	0.21	-1.7
3,043,593	+		DDA3937_RS13330	0.22	-1.1
3,043,593	+		DDA3937_RS13330	0.22	-1.1
3,043,593	+		DDA3937_RS13330	0.22	-2.1
3,043,593	+		DDA3937_RS13330	0.22	-1.5
3,043,593	+		DDA3937_RS13330	0.22	-1.6
3,043,594	-		DDA3937_RS13330	0.22	-1.6
3,043,594	-		DDA3937_RS13330	0.22	+2.0
3,043,684	+		DDA3937_RS13330	0.25	-0.8
3,043,686	+		DDA3937_RS13330	0.25	-1.7
3,043,686	+		DDA3937_RS13330	0.25	-0.3
3,043,687	-		DDA3937_RS13330	0.25	-2.0
3,043,687	-		DDA3937_RS13330	0.25	-0.4
3,043,687	-		DDA3937_RS13330	0.25	-2.1
3,043,693	+		DDA3937_RS13330	0.25	-0.7
3,043,694	-		DDA3937_RS13330	0.25	-1.9
3,043,694	-		DDA3937_RS13330	0.25	-2.1