Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12470

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,837,007	+				+0.1
2,837,007	+				+0.6
2,837,007	+				-1.9
2,837,907	-				-1.7
2,837,991	+				-0.2
2,838,167	+		DDA3937_RS12470	0.22	-0.3
2,838,167	+		DDA3937_RS12470	0.22	-0.1
2,838,168	-		DDA3937_RS12470	0.22	-0.5
2,838,168	-		DDA3937_RS12470	0.22	-1.1
2,838,168	-		DDA3937_RS12470	0.22	+0.5
2,838,168	-		DDA3937_RS12470	0.22	-0.0
2,838,168	-				+0.3
2,838,168	-		DDA3937_RS12470	0.22	+0.1
2,838,168	-		DDA3937_RS12470	0.22	-0.1
2,838,168	-		DDA3937_RS12470	0.22	-0.1
2,838,179	+		DDA3937_RS12470	0.23	-0.5
2,838,180	-		DDA3937_RS12470	0.23	+0.1
2,838,180	-		DDA3937_RS12470	0.23	+0.4
2,838,210	-		DDA3937_RS12470	0.26	+0.9
2,838,252	+		DDA3937_RS12470	0.31	-0.3
2,838,253	-		DDA3937_RS12470	0.31	+0.7
2,838,295	+		DDA3937_RS12470	0.36	-0.3
2,838,360	+		DDA3937_RS12470	0.43	+0.3
2,838,361	-		DDA3937_RS12470	0.43	-2.1
2,838,361	-		DDA3937_RS12470	0.43	-0.9
2,838,361	-		DDA3937_RS12470	0.43	-1.0
2,838,361	-		DDA3937_RS12470	0.43	-0.2
2,838,361	-		DDA3937_RS12470	0.43	+0.2
2,838,361	-		DDA3937_RS12470	0.43	-0.1
2,838,467	-		DDA3937_RS12470	0.55	-0.8
2,838,503	+		DDA3937_RS12470	0.59	+0.7
2,838,504	-		DDA3937_RS12470	0.59	-1.3
2,838,510	+		DDA3937_RS12470	0.60	-0.4
2,838,548	+		DDA3937_RS12470	0.64	-1.3
2,838,590	-		DDA3937_RS12470	0.69	-0.1
2,838,590	-		DDA3937_RS12470	0.69	-0.4
2,838,648	+		DDA3937_RS12470	0.75	-0.2
2,838,648	+		DDA3937_RS12470	0.75	-0.9
2,838,648	+		DDA3937_RS12470	0.75	+0.5
2,838,648	+		DDA3937_RS12470	0.75	-1.1
2,838,649	-		DDA3937_RS12470	0.75	-1.0
2,838,649	-		DDA3937_RS12470	0.75	+1.0
2,838,849	+				-1.5
2,838,850	-				-0.5
2,838,850	-				-0.7
2,838,853	+				-1.3
2,838,853	+				-0.1
2,838,854	-				-0.7
2,838,854	-				-0.1
2,838,854	-				-1.4
2,838,854	-				+0.7
2,838,902	+				-0.9
2,838,902	+				-2.7
2,838,903	-				+0.1
2,838,903	-				-0.3
2,838,904	+				-1.1
2,838,904	+				-0.3
2,838,904	+				-0.9
2,838,904	+				+0.3
2,838,904	+				+1.1
2,838,904	+				-0.3
2,838,905	-				+0.9
2,838,905	-				-0.1
2,838,905	-				+1.1
2,838,905	-				+0.3
2,838,905	-				-0.1
2,838,905	-				-1.5
2,838,949	+				-0.3
2,838,950	-				+0.1
2,838,950	-				-0.9
2,838,958	-				-0.4
2,839,004	+				-0.3
2,839,004	+				-0.7
2,839,005	-				-0.7
2,839,005	-				+0.2
2,839,005	-				-0.8
2,839,005	-				-0.1
2,839,005	-				-0.3
2,839,008	+				+0.3
2,839,008	+				-0.9
2,839,036	-				+0.3
2,839,036	-				+0.7
2,839,036	-				-2.0
2,839,039	+				-0.9
2,839,040	-				-0.1
2,839,042	+				-0.5
2,839,043	-				+0.3
2,839,043	-				+1.9
2,839,043	-				-0.3
2,839,099	-				-0.8
2,839,203	-				-0.7
2,839,374	+		DDA3937_RS12475	0.13	-0.4
2,839,386	+		DDA3937_RS12475	0.14	-0.1
2,839,437	+		DDA3937_RS12475	0.16	+0.7
2,839,437	+				-0.7
2,839,437	+				-0.0
2,839,437	+		DDA3937_RS12475	0.16	-3.0
2,839,437	+		DDA3937_RS12475	0.16	-0.5
2,839,438	-		DDA3937_RS12475	0.16	-0.6
2,839,438	-		DDA3937_RS12475	0.16	-0.4
2,839,438	-		DDA3937_RS12475	0.16	-0.3
2,839,521	+		DDA3937_RS12475	0.19	-0.5
2,839,522	-		DDA3937_RS12475	0.20	+0.5
2,839,523	+		DDA3937_RS12475	0.20	-0.8
2,839,523	+		DDA3937_RS12475	0.20	+1.1
2,839,524	-		DDA3937_RS12475	0.20	-0.7
2,839,541	+		DDA3937_RS12475	0.20	-0.4
2,839,554	+		DDA3937_RS12475	0.21	-1.6
2,839,554	+		DDA3937_RS12475	0.21	-2.5
2,839,554	+		DDA3937_RS12475	0.21	+2.6
2,839,554	+		DDA3937_RS12475	0.21	+0.8
2,839,554	+		DDA3937_RS12475	0.21	-0.4
2,839,555	-		DDA3937_RS12475	0.21	+0.8
2,839,555	-		DDA3937_RS12475	0.21	-0.3
2,839,555	-		DDA3937_RS12475	0.21	-0.9
2,839,555	-		DDA3937_RS12475	0.21	-1.5
2,839,555	-		DDA3937_RS12475	0.21	-0.9
2,839,555	-		DDA3937_RS12475	0.21	+0.3
2,839,555	-		DDA3937_RS12475	0.21	-0.0
2,839,560	+		DDA3937_RS12475	0.21	+0.2
2,839,561	-		DDA3937_RS12475	0.21	-1.4
2,839,561	-		DDA3937_RS12475	0.21	-0.5
2,839,561	-		DDA3937_RS12475	0.21	+0.0
2,839,561	-		DDA3937_RS12475	0.21	+0.7
2,839,578	-		DDA3937_RS12475	0.22	+0.3
2,839,676	-		DDA3937_RS12475	0.26	-1.0
2,839,748	+		DDA3937_RS12475	0.29	-0.0
2,839,748	+		DDA3937_RS12475	0.29	+0.3
2,839,748	+		DDA3937_RS12475	0.29	+0.3
2,839,749	-		DDA3937_RS12475	0.29	+0.0
2,839,790	+		DDA3937_RS12475	0.31	+0.7