Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12045

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,738,909	-				-0.9
2,738,992	+				-0.5
2,738,992	+				-1.0
2,738,992	+				+0.4
2,738,992	+				+0.6
2,738,993	-				+1.0
2,738,993	-				-0.2
2,738,993	-				-0.0
2,739,262	+		DDA3937_RS12040	0.58	+0.6
2,739,365	+		DDA3937_RS12040	0.80	-1.2
2,739,366	-				-1.3
2,739,366	-		DDA3937_RS12040	0.80	+0.1
2,739,366	-		DDA3937_RS12040	0.80	-1.0
2,739,398	-		DDA3937_RS12040	0.87	-0.1
2,739,416	+				-0.7
2,739,416	+				-0.9
2,739,416	+				-0.1
2,739,416	+				-0.3
2,739,417	-				-0.3
2,739,417	-				-0.1
2,739,417	-				+0.1
2,739,417	-				-1.3
2,739,417	-				-0.6
2,739,417	-				-1.9
2,739,419	-				-0.7
2,739,468	+				+0.9
2,739,522	-				+0.3
2,739,612	-				+0.9
2,739,668	+				-0.3
2,739,691	+				-0.3
2,739,692	-				-0.2
2,739,697	-				-1.8
2,739,697	-				-2.3
2,739,697	-				+0.9
2,739,706	+				+0.5
2,739,739	+				+0.4
2,739,740	-				-0.3
2,739,813	-				-0.5
2,739,813	-				-0.7
2,739,816	-				+2.2
2,739,965	+		DDA3937_RS12045	0.12	+0.3
2,739,998	+		DDA3937_RS12045	0.17	-0.1
2,740,040	+		DDA3937_RS12045	0.23	-0.2
2,740,041	-		DDA3937_RS12045	0.24	+0.8
2,740,123	-		DDA3937_RS12045	0.36	-1.3
2,740,123	-		DDA3937_RS12045	0.36	+0.9
2,740,154	-		DDA3937_RS12045	0.41	-0.1
2,740,184	+		DDA3937_RS12045	0.45	-1.3
2,740,185	-		DDA3937_RS12045	0.45	-0.9
2,740,188	-		DDA3937_RS12045	0.46	-1.0
2,740,188	-		DDA3937_RS12045	0.46	+0.1
2,740,219	+		DDA3937_RS12045	0.50	-1.0
2,740,220	-		DDA3937_RS12045	0.51	-0.8
2,740,241	-		DDA3937_RS12045	0.54	-0.4
2,740,317	-		DDA3937_RS12045	0.65	-0.6
2,740,357	-		DDA3937_RS12045	0.71	-0.2
2,740,434	-		DDA3937_RS12045	0.83	-1.2
2,740,699	+				-1.5
2,740,699	+				-2.0
2,740,699	+				-0.5
2,740,699	+				-0.3
2,740,699	+				-0.3
2,740,699	+				-1.2
2,740,699	+				+0.8
2,740,699	+				-0.1
2,740,699	+				-0.8
2,740,699	+				+0.5
2,740,700	-				-0.1
2,740,700	-				-1.7
2,740,700	-				-0.9
2,740,700	-				-0.6
2,740,700	-				-0.5
2,740,700	-				-0.3
2,740,700	-				-0.1
2,740,700	-				-0.3
2,740,700	-				-2.0
2,740,703	+				-0.5
2,740,703	+				+1.0
2,740,703	+				-0.7
2,740,703	+				+0.3
2,740,703	+				-0.7
2,740,703	+				-0.6
2,740,704	-				-1.1
2,740,704	-				-1.2
2,740,709	+				-2.3
2,740,709	+				-0.2
2,740,709	+				-0.7
2,740,710	-				-0.1
2,740,710	-				+1.1
2,740,710	-				-0.6
2,740,774	+		DDA3937_RS12050	0.12	+0.9
2,740,896	+		DDA3937_RS12050	0.31	-0.0
2,740,908	+		DDA3937_RS12050	0.33	-1.0
2,740,908	+		DDA3937_RS12050	0.33	+0.6
2,740,908	+		DDA3937_RS12050	0.33	+0.1
2,740,909	-		DDA3937_RS12050	0.33	-0.7
2,740,939	-		DDA3937_RS12050	0.38	-0.7
2,740,949	+		DDA3937_RS12050	0.40	+1.3
2,740,949	+		DDA3937_RS12050	0.40	-2.1
2,741,027	+		DDA3937_RS12050	0.52	-0.1
2,741,028	-		DDA3937_RS12050	0.52	-1.5
2,741,170	+		DDA3937_RS12050	0.74	-2.0
2,741,170	+		DDA3937_RS12050	0.74	-0.3
2,741,171	-		DDA3937_RS12050	0.74	-0.4
2,741,171	-		DDA3937_RS12050	0.74	-0.4
2,741,182	-		DDA3937_RS12050	0.76	-1.2
2,741,182	-		DDA3937_RS12050	0.76	-0.8
2,741,182	-		DDA3937_RS12050	0.76	-0.3
2,741,291	-				-0.5
2,741,299	-				-0.7
2,741,332	-				+0.3
2,741,348	-				-0.5
2,741,348	-				+0.3
2,741,348	-				-0.7
2,741,461	+		DDA3937_RS12055	0.37	+0.3
2,741,517	-		DDA3937_RS12055	0.53	+1.1
2,741,517	-		DDA3937_RS12055	0.53	+1.0
2,741,536	+		DDA3937_RS12055	0.58	-0.6
2,741,536	+		DDA3937_RS12055	0.58	-0.7
2,741,536	+		DDA3937_RS12055	0.58	-0.9
2,741,536	+		DDA3937_RS12055	0.58	-2.2
2,741,536	+		DDA3937_RS12055	0.58	+0.2
2,741,537	-		DDA3937_RS12055	0.58	+0.3
2,741,537	-				+0.3
2,741,537	-		DDA3937_RS12055	0.58	+0.3
2,741,537	-		DDA3937_RS12055	0.58	+0.5
2,741,537	-		DDA3937_RS12055	0.58	+0.6
2,741,537	-		DDA3937_RS12055	0.58	+0.3