Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11935

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,711,279	+				+0.9
2,711,279	+				+0.9
2,711,279	+				-1.1
2,711,287	+				-1.1
2,711,287	+				-1.1
2,711,288	-				+0.3
2,711,288	-				+0.0
2,711,288	-				-1.7
2,711,288	-				+0.4
2,711,288	-				-1.1
2,711,288	-				-0.5
2,711,334	+				-0.2
2,711,334	+				+0.0
2,711,335	-				-1.7
2,711,335	-				-0.4
2,711,335	-				-1.5
2,711,335	-				+0.6
2,711,335	-				-0.9
2,711,335	-				+0.3
2,711,351	+				+0.3
2,711,351	+				-1.3
2,711,351	+				-0.9
2,711,351	+				+1.0
2,711,351	+				-0.4
2,711,352	-				+0.1
2,711,352	-				-0.3
2,711,352	-				-0.1
2,711,352	-				-0.3
2,711,360	+				-0.0
2,711,360	+				+0.7
2,711,360	+				-0.5
2,711,360	+				-1.5
2,711,361	-		DDA3937_RS11930	0.10	-1.1
2,711,361	-		DDA3937_RS11930	0.10	+0.0
2,711,361	-		DDA3937_RS11930	0.10	-0.2
2,711,364	+		DDA3937_RS11930	0.10	-1.3
2,711,365	-		DDA3937_RS11930	0.10	-1.0
2,711,384	+		DDA3937_RS11930	0.13	-0.1
2,711,592	+		DDA3937_RS11930	0.36	+0.2
2,711,608	+		DDA3937_RS11930	0.38	-0.1
2,711,651	+		DDA3937_RS11930	0.43	+0.9
2,711,652	-		DDA3937_RS11930	0.43	-0.4
2,711,652	-		DDA3937_RS11930	0.43	+0.1
2,711,724	+		DDA3937_RS11930	0.51	-0.9
2,711,725	-		DDA3937_RS11930	0.51	-0.0
2,711,725	-		DDA3937_RS11930	0.51	-0.7
2,711,734	+		DDA3937_RS11930	0.52	-0.6
2,711,786	-		DDA3937_RS11930	0.58	-0.0
2,711,802	+		DDA3937_RS11930	0.59	-0.7
2,711,803	-		DDA3937_RS11930	0.60	-1.9
2,711,846	+		DDA3937_RS11930	0.64	-0.3
2,711,846	+		DDA3937_RS11930	0.64	-2.4
2,711,846	+		DDA3937_RS11930	0.64	+0.4
2,711,846	+		DDA3937_RS11930	0.64	-1.5
2,711,846	+		DDA3937_RS11930	0.64	-0.1
2,711,847	-		DDA3937_RS11930	0.65	-0.7
2,711,878	-		DDA3937_RS11930	0.68	-0.5
2,712,056	+		DDA3937_RS11930	0.88	-0.8
2,712,057	-		DDA3937_RS11930	0.88	-0.7
2,712,057	-		DDA3937_RS11930	0.88	+0.0
2,712,081	+				+0.2
2,712,082	-				+1.3
2,712,181	+				+0.2
2,712,182	-				+0.3
2,712,183	+				-1.3
2,712,183	+				+0.1
2,712,184	-				-0.2
2,712,202	+				+0.0
2,712,215	-				-0.4
2,712,524	+		DDA3937_RS11935	0.25	+0.1
2,712,531	+		DDA3937_RS11935	0.26	+0.2
2,712,531	+		DDA3937_RS11935	0.26	-0.6
2,712,531	+		DDA3937_RS11935	0.26	-0.4
2,712,532	-		DDA3937_RS11935	0.26	-0.2
2,712,570	-		DDA3937_RS11935	0.30	-1.4
2,712,599	+		DDA3937_RS11935	0.33	-0.4
2,712,615	+		DDA3937_RS11935	0.34	+0.5
2,712,615	+		DDA3937_RS11935	0.34	-0.7
2,712,615	+		DDA3937_RS11935	0.34	+0.9
2,712,615	+		DDA3937_RS11935	0.34	-0.1
2,712,615	+		DDA3937_RS11935	0.34	+1.1
2,712,615	+		DDA3937_RS11935	0.34	-0.7
2,712,615	+		DDA3937_RS11935	0.34	-2.1
2,712,615	+		DDA3937_RS11935	0.34	+0.4
2,712,615	+		DDA3937_RS11935	0.34	-0.5
2,712,616	-		DDA3937_RS11935	0.34	-0.5
2,712,616	-		DDA3937_RS11935	0.34	-0.6
2,712,616	-		DDA3937_RS11935	0.34	-0.2
2,712,616	-		DDA3937_RS11935	0.34	-0.5
2,712,616	-		DDA3937_RS11935	0.34	+1.1
2,712,720	+		DDA3937_RS11935	0.44	-1.3
2,712,721	-		DDA3937_RS11935	0.45	-0.1
2,712,723	-		DDA3937_RS11935	0.45	-2.1
2,712,895	-		DDA3937_RS11935	0.62	-0.7
2,712,895	-		DDA3937_RS11935	0.62	+0.9
2,712,900	+		DDA3937_RS11935	0.62	-0.2
2,712,900	+		DDA3937_RS11935	0.62	-0.4
2,712,917	+		DDA3937_RS11935	0.64	-0.7
2,712,918	-		DDA3937_RS11935	0.64	-0.4
2,712,936	+		DDA3937_RS11935	0.66	-0.3
2,712,937	-		DDA3937_RS11935	0.66	-0.4
2,712,937	-		DDA3937_RS11935	0.66	+0.9
2,712,937	-		DDA3937_RS11935	0.66	-0.9
2,713,027	+		DDA3937_RS11935	0.75	+1.0
2,713,028	-		DDA3937_RS11935	0.75	-0.4
2,713,028	-		DDA3937_RS11935	0.75	-0.4
2,713,035	+		DDA3937_RS11935	0.75	+0.4
2,713,035	+		DDA3937_RS11935	0.75	-1.6
2,713,035	+		DDA3937_RS11935	0.75	-2.2
2,713,035	+		DDA3937_RS11935	0.75	-2.1
2,713,035	+		DDA3937_RS11935	0.75	-1.1
2,713,035	+		DDA3937_RS11935	0.75	-0.1
2,713,035	+		DDA3937_RS11935	0.75	-1.7
2,713,035	+		DDA3937_RS11935	0.75	+0.9
2,713,035	+		DDA3937_RS11935	0.75	-1.0
2,713,035	+		DDA3937_RS11935	0.75	+1.4
2,713,035	+		DDA3937_RS11935	0.75	-0.6
2,713,035	+		DDA3937_RS11935	0.75	+0.0
2,713,035	+		DDA3937_RS11935	0.75	-1.3
2,713,035	+		DDA3937_RS11935	0.75	-0.3
2,713,036	-		DDA3937_RS11935	0.75	-0.9
2,713,036	-		DDA3937_RS11935	0.75	-0.5
2,713,036	-		DDA3937_RS11935	0.75	-0.4
2,713,036	-		DDA3937_RS11935	0.75	-0.3
2,713,036	-		DDA3937_RS11935	0.75	-0.7
2,713,036	-		DDA3937_RS11935	0.75	-0.9
2,713,036	-		DDA3937_RS11935	0.75	-1.7
2,713,285	-				+0.3
2,713,293	+				-0.6
2,713,294	-				-0.4
2,713,362	+				-0.3
2,713,362	+				+0.4
2,713,362	+				+0.6
2,713,362	+				+1.0
2,713,362	+				+2.6
2,713,362	+				+0.0
2,713,362	+				+1.1
2,713,363	-				+0.2
2,713,363	-				+2.3
2,713,363	-				+0.7
2,713,363	-				-0.3
2,713,433	+				-0.0
2,713,433	+				+0.6
2,713,433	+				-0.5
2,713,433	+				-0.7
2,713,434	-				+0.0
2,713,434	-				-0.2
2,713,434	-				-0.3
2,713,711	-		DDA3937_RS11940	0.24	-0.6
2,713,892	+		DDA3937_RS11940	0.37	-2.5
2,713,893	-		DDA3937_RS11940	0.37	-1.1
2,713,982	+		DDA3937_RS11940	0.43	-1.3
2,713,982	+		DDA3937_RS11940	0.43	-0.5
2,713,982	+		DDA3937_RS11940	0.43	-0.9
2,713,983	-		DDA3937_RS11940	0.43	-0.1
2,713,983	-		DDA3937_RS11940	0.43	+1.3
2,713,983	-		DDA3937_RS11940	0.43	+0.8
2,713,983	-		DDA3937_RS11940	0.43	+0.7
2,713,983	-		DDA3937_RS11940	0.43	-0.5
2,713,983	-		DDA3937_RS11940	0.43	+0.5
2,713,983	-		DDA3937_RS11940	0.43	-0.1
2,713,983	-		DDA3937_RS11940	0.43	+0.7
2,713,983	-		DDA3937_RS11940	0.43	+0.3
2,713,983	-		DDA3937_RS11940	0.43	+0.5
2,713,983	-		DDA3937_RS11940	0.43	-1.1
2,713,987	+		DDA3937_RS11940	0.44	-0.4
2,713,988	-		DDA3937_RS11940	0.44	+0.3
2,714,016	+		DDA3937_RS11940	0.46	-0.5
2,714,016	+				-0.1
2,714,017	-		DDA3937_RS11940	0.46	-0.5
2,714,098	-		DDA3937_RS11940	0.52	-0.3
2,714,098	-		DDA3937_RS11940	0.52	+2.0
2,714,098	-		DDA3937_RS11940	0.52	-0.9