Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10485

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,359,003	+		DDA3937_RS10475	0.78	-1.3
2,359,004	-		DDA3937_RS10475	0.79	-0.7
2,359,193	-				-1.3
2,359,225	-				-1.7
2,359,346	-		DDA3937_RS10480	0.19	-1.3
2,359,409	-		DDA3937_RS10480	0.30	-2.2
2,359,732	+		DDA3937_RS10480	0.85	-1.3
2,359,732	+		DDA3937_RS10480	0.85	-0.7
2,359,732	+		DDA3937_RS10480	0.85	+2.3
2,359,732	+				+0.3
2,359,772	+				+0.3
2,359,772	+				+0.3
2,359,772	+				+0.3
2,359,772	+				+0.3
2,359,772	+				-0.9
2,359,772	+				-1.3
2,359,772	+				+0.7
2,359,773	-				-1.3
2,359,773	-				-1.3
2,359,777	-				-2.1
2,359,777	-				-1.7
2,359,777	-				-0.7
2,359,789	-				-1.3
2,359,789	-				-1.3
2,359,908	-				-1.3
2,359,963	+				-0.7
2,359,963	+				+0.3
2,359,964	-				+0.3
2,359,964	-				-1.7
2,359,964	-				-2.6
2,360,020	-		DDA3937_RS10485	0.13	-3.4
2,360,032	+		DDA3937_RS10485	0.14	+0.3
2,360,033	-		DDA3937_RS10485	0.14	-1.3
2,360,083	-		DDA3937_RS10485	0.17	-2.7
2,360,200	+		DDA3937_RS10485	0.25	+0.3
2,360,208	+		DDA3937_RS10485	0.25	-1.3
2,360,209	-		DDA3937_RS10485	0.25	-1.3
2,360,227	-		DDA3937_RS10485	0.26	+0.3
2,360,227	-		DDA3937_RS10485	0.26	-0.7
2,360,227	-		DDA3937_RS10485	0.26	-2.7
2,360,230	+		DDA3937_RS10485	0.27	+0.3
2,360,230	+		DDA3937_RS10485	0.27	+0.3
2,360,230	+		DDA3937_RS10485	0.27	-1.3
2,360,230	+				+0.3
2,360,230	+		DDA3937_RS10485	0.27	-0.7
2,360,231	-		DDA3937_RS10485	0.27	-2.1
2,360,267	+		DDA3937_RS10485	0.29	-1.3
2,360,268	-		DDA3937_RS10485	0.29	-0.7
2,360,268	-		DDA3937_RS10485	0.29	-0.7
2,360,268	-		DDA3937_RS10485	0.29	-1.3
2,360,268	-		DDA3937_RS10485	0.29	-2.1
2,360,408	-		DDA3937_RS10485	0.38	-2.6
2,360,494	+		DDA3937_RS10485	0.43	-1.3
2,360,494	+		DDA3937_RS10485	0.43	+0.3
2,360,494	+		DDA3937_RS10485	0.43	-0.7
2,360,495	-		DDA3937_RS10485	0.44	-2.8
2,360,495	-		DDA3937_RS10485	0.44	-1.7
2,360,495	-		DDA3937_RS10485	0.44	-1.6
2,360,495	-		DDA3937_RS10485	0.44	+0.3
2,360,495	-		DDA3937_RS10485	0.44	+0.3
2,360,495	-		DDA3937_RS10485	0.44	+1.6
2,360,503	+		DDA3937_RS10485	0.44	-1.7
2,360,503	+		DDA3937_RS10485	0.44	+0.3
2,360,503	+		DDA3937_RS10485	0.44	+0.3
2,360,503	+		DDA3937_RS10485	0.44	+0.3
2,360,503	+		DDA3937_RS10485	0.44	-2.6
2,360,503	+		DDA3937_RS10485	0.44	-2.3
2,360,503	+		DDA3937_RS10485	0.44	-1.7
2,360,503	+		DDA3937_RS10485	0.44	-4.1
2,360,503	+		DDA3937_RS10485	0.44	-0.7
2,360,503	+		DDA3937_RS10485	0.44	-2.1
2,360,503	+				+0.3
2,360,503	+		DDA3937_RS10485	0.44	-0.7
2,360,504	-				-1.3
2,360,504	-		DDA3937_RS10485	0.44	-0.7
2,360,504	-		DDA3937_RS10485	0.44	-1.3
2,360,504	-		DDA3937_RS10485	0.44	-0.7
2,360,504	-				+0.3
2,360,685	+		DDA3937_RS10485	0.56	-1.7
2,360,851	+		DDA3937_RS10485	0.66	-2.1
2,360,852	-		DDA3937_RS10485	0.66	+0.3
2,360,861	-		DDA3937_RS10485	0.67	-0.7
2,361,009	+		DDA3937_RS10485	0.76	-1.3
2,361,009	+		DDA3937_RS10485	0.76	+0.3
2,361,047	+		DDA3937_RS10485	0.79	+0.3
2,361,048	-		DDA3937_RS10485	0.79	-4.3
2,361,384	+				-3.1
2,361,384	+				-2.3
2,361,385	-				-0.7
2,361,385	-				-0.7
2,361,414	+				+0.3
2,361,452	+				-1.3
2,361,458	+				-2.1
2,361,458	+				-1.0
2,361,459	-				-0.5
2,361,459	-				-0.3
2,361,549	+				-1.7
2,361,549	+				-0.7
2,361,549	+				-1.3
2,361,604	+				-0.3
2,361,604	+				-0.1
2,361,614	+				-0.3
2,361,615	-				-0.7
2,361,615	-				-0.6
2,361,641	+				+0.7
2,361,790	+				-0.7
2,361,791	-				+0.1
2,361,925	+		DDA3937_RS10490	0.20	-0.6
2,362,011	+		DDA3937_RS10490	0.30	-1.0
2,362,253	-		DDA3937_RS10490	0.58	+0.8
2,362,296	+		DDA3937_RS10490	0.62	+0.3
2,362,296	+		DDA3937_RS10490	0.62	-1.1
2,362,296	+		DDA3937_RS10490	0.62	-0.5
2,362,296	+		DDA3937_RS10490	0.62	-0.6
2,362,296	+		DDA3937_RS10490	0.62	-0.6
2,362,297	-		DDA3937_RS10490	0.63	+0.1
2,362,297	-		DDA3937_RS10490	0.63	-0.2
2,362,297	-		DDA3937_RS10490	0.63	-0.1
2,362,301	+		DDA3937_RS10490	0.63	-0.5
2,362,301	+				+1.8
2,362,301	+		DDA3937_RS10490	0.63	-1.0
2,362,301	+		DDA3937_RS10490	0.63	-0.5
2,362,302	-		DDA3937_RS10490	0.63	-0.2
2,362,302	-		DDA3937_RS10490	0.63	-0.2
2,362,302	-		DDA3937_RS10490	0.63	-1.3