Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10465

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,354,634	+				-0.2
2,354,662	+				+0.7
2,354,734	+				-1.5
2,354,742	+				+0.1
2,354,743	-				+0.2
2,354,789	-				+1.0
2,354,809	+				-0.6
2,354,810	-				-0.8
2,354,834	+				+0.2
2,354,887	+				-3.3
2,354,888	-				-2.3
2,355,011	-		DDA3937_RS10460	0.25	-2.1
2,355,011	-		DDA3937_RS10460	0.25	-2.1
2,355,011	-		DDA3937_RS10460	0.25	-0.2
2,355,094	+		DDA3937_RS10460	0.35	+0.2
2,355,094	+		DDA3937_RS10460	0.35	-0.5
2,355,094	+		DDA3937_RS10460	0.35	-1.3
2,355,095	-		DDA3937_RS10460	0.35	-1.3
2,355,095	-		DDA3937_RS10460	0.35	-1.3
2,355,095	-		DDA3937_RS10460	0.35	-2.1
2,355,095	-		DDA3937_RS10460	0.35	-1.3
2,355,098	+		DDA3937_RS10460	0.36	-0.8
2,355,098	+		DDA3937_RS10460	0.36	-1.0
2,355,098	+		DDA3937_RS10460	0.36	+0.2
2,355,098	+		DDA3937_RS10460	0.36	+0.2
2,355,099	-		DDA3937_RS10460	0.36	-1.1
2,355,099	-		DDA3937_RS10460	0.36	-1.3
2,355,099	-		DDA3937_RS10460	0.36	+0.2
2,355,099	-		DDA3937_RS10460	0.36	-1.8
2,355,099	-		DDA3937_RS10460	0.36	-1.0
2,355,099	-		DDA3937_RS10460	0.36	+0.2
2,355,161	+		DDA3937_RS10460	0.44	-0.8
2,355,162	-		DDA3937_RS10460	0.44	-0.8
2,355,162	-		DDA3937_RS10460	0.44	-0.8
2,355,225	+		DDA3937_RS10460	0.51	-0.8
2,355,274	+		DDA3937_RS10460	0.58	-1.1
2,355,285	+		DDA3937_RS10460	0.59	-0.8
2,355,286	-		DDA3937_RS10460	0.59	-1.9
2,355,286	-		DDA3937_RS10460	0.59	+0.2
2,355,286	-		DDA3937_RS10460	0.59	-2.1
2,355,286	-				+0.2
2,355,313	+		DDA3937_RS10460	0.62	-1.8
2,355,314	-		DDA3937_RS10460	0.62	-0.8
2,355,314	-		DDA3937_RS10460	0.62	-1.2
2,355,318	+		DDA3937_RS10460	0.63	-1.8
2,355,343	+		DDA3937_RS10460	0.66	-1.8
2,355,343	+				+0.2
2,355,510	-		DDA3937_RS10460	0.87	-0.8
2,355,655	+				-2.9
2,355,840	+		DDA3937_RS10465	0.19	-1.7
2,355,840	+		DDA3937_RS10465	0.19	+0.3
2,355,841	-		DDA3937_RS10465	0.19	-0.7
2,355,841	-		DDA3937_RS10465	0.19	-0.7
2,355,841	-		DDA3937_RS10465	0.19	-0.7
2,355,841	-		DDA3937_RS10465	0.19	-1.7
2,355,918	+		DDA3937_RS10465	0.25	-0.7
2,355,918	+		DDA3937_RS10465	0.25	-1.3
2,355,918	+		DDA3937_RS10465	0.25	-0.7
2,355,919	-		DDA3937_RS10465	0.25	-1.3
2,355,975	+		DDA3937_RS10465	0.30	-0.2
2,355,975	+				+0.3
2,355,975	+		DDA3937_RS10465	0.30	+0.3
2,355,976	-		DDA3937_RS10465	0.30	-2.7
2,355,976	-		DDA3937_RS10465	0.30	-0.2
2,356,131	-		DDA3937_RS10465	0.43	-0.7
2,356,174	+		DDA3937_RS10465	0.47	+1.3
2,356,174	+		DDA3937_RS10465	0.47	-1.7
2,356,175	-		DDA3937_RS10465	0.47	-2.3
2,356,269	+		DDA3937_RS10465	0.55	-1.7
2,356,270	-		DDA3937_RS10465	0.55	-2.6
2,356,413	+		DDA3937_RS10465	0.67	-0.7
2,356,413	+		DDA3937_RS10465	0.67	-0.7
2,356,413	+		DDA3937_RS10465	0.67	-1.7
2,356,414	-		DDA3937_RS10465	0.67	-1.7
2,356,414	-		DDA3937_RS10465	0.67	-1.9
2,356,414	-		DDA3937_RS10465	0.67	-1.3
2,356,414	-		DDA3937_RS10465	0.67	+0.3
2,356,414	-		DDA3937_RS10465	0.67	-0.7
2,356,414	-		DDA3937_RS10465	0.67	-2.3
2,356,504	+		DDA3937_RS10465	0.74	-0.7
2,356,505	-		DDA3937_RS10465	0.75	-2.3
2,356,505	-		DDA3937_RS10465	0.75	-3.1
2,356,590	+		DDA3937_RS10465	0.82	+0.3
2,356,591	-				+0.3
2,356,624	+		DDA3937_RS10465	0.85	-1.3
2,356,624	+		DDA3937_RS10465	0.85	+0.3
2,356,657	-		DDA3937_RS10465	0.87	+0.3
2,356,760	+				-1.7
2,356,761	-				-1.3
2,356,765	-				-0.7
2,356,765	-				+0.3
2,356,765	-				-0.7
2,356,765	-				-1.7
2,356,765	-				-1.7
2,356,765	-				-2.1
2,356,788	+				+0.3
2,356,789	-				-1.3
2,356,795	+				-0.7
2,356,795	+				+0.6
2,356,795	+				-1.3
2,356,795	+				-0.5
2,356,795	+				-1.3
2,356,796	-				-1.3
2,356,796	-				-1.3
2,356,796	-				+0.3
2,356,796	-				+0.3
2,356,800	-				-1.7
2,356,800	-				-0.7
2,356,800	-				-0.7
2,356,808	-				-1.3
2,356,808	-				-1.7
2,356,808	-				+0.3
2,356,808	-				-1.7
2,356,818	+				-0.7
2,356,818	+				+0.3
2,356,818	+				-1.3
2,356,818	+				-1.7
2,356,819	-				-0.7
2,356,819	-				+0.1
2,356,819	-				-0.7
2,356,819	-				-0.7
2,356,840	-				-0.7
2,357,209	+		DDA3937_RS10470	0.28	+0.3
2,357,278	+		DDA3937_RS10470	0.33	+0.3
2,357,288	+		DDA3937_RS10470	0.33	+0.3
2,357,289	-		DDA3937_RS10470	0.33	-0.7
2,357,289	-		DDA3937_RS10470	0.33	-1.3
2,357,289	-		DDA3937_RS10470	0.33	-1.3
2,357,293	+		DDA3937_RS10470	0.34	+0.4
2,357,293	+		DDA3937_RS10470	0.34	-0.7
2,357,293	+		DDA3937_RS10470	0.34	+0.8
2,357,294	-				+0.3
2,357,375	+		DDA3937_RS10470	0.40	+0.3
2,357,376	-		DDA3937_RS10470	0.40	+0.3
2,357,461	+		DDA3937_RS10470	0.46	-0.7
2,357,736	+		DDA3937_RS10470	0.66	+0.3
2,357,772	-		DDA3937_RS10470	0.68	-1.3
2,357,801	-		DDA3937_RS10470	0.70	-0.5