Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS09790 and DDA3937_RS09795 are separated by 11 nucleotides DDA3937_RS09795 and DDA3937_RS09800 overlap by 23 nucleotides
DDA3937_RS09790: DDA3937_RS09790 - citrate lyase subunit alpha, at 2,210,155 to 2,211,684
_RS09790
DDA3937_RS09795: DDA3937_RS09795 - citrate lyase holo-[acyl-carrier protein] synthase, at 2,211,696 to 2,212,223
_RS09795
DDA3937_RS09800: DDA3937_RS09800 - triphosphoribosyl-dephospho-CoA synthase CitG, at 2,212,201 to 2,213,109
_RS09800
Position (kb)
2211
2212
2213 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2211.689 kb on + strand at 2211.689 kb on + strand at 2211.691 kb on + strand at 2211.692 kb on - strand at 2211.692 kb on - strand at 2211.697 kb on + strand at 2211.982 kb on + strand, within DDA3937_RS09795 at 2211.990 kb on - strand, within DDA3937_RS09795 at 2212.009 kb on + strand, within DDA3937_RS09795 at 2212.009 kb on + strand, within DDA3937_RS09795 at 2212.009 kb on + strand, within DDA3937_RS09795 at 2212.010 kb on - strand at 2212.112 kb on + strand, within DDA3937_RS09795 at 2212.112 kb on + strand, within DDA3937_RS09795 at 2212.112 kb on + strand, within DDA3937_RS09795 at 2212.113 kb on - strand, within DDA3937_RS09795 at 2212.113 kb on - strand, within DDA3937_RS09795 at 2212.113 kb on - strand, within DDA3937_RS09795 at 2212.113 kb on - strand, within DDA3937_RS09795 at 2212.113 kb on - strand, within DDA3937_RS09795 at 2212.113 kb on - strand, within DDA3937_RS09795 at 2212.114 kb on + strand, within DDA3937_RS09795 at 2212.114 kb on + strand, within DDA3937_RS09795 at 2212.114 kb on + strand, within DDA3937_RS09795 at 2212.115 kb on - strand, within DDA3937_RS09795 at 2212.211 kb on + strand at 2212.256 kb on + strand at 2212.256 kb on + strand at 2212.256 kb on + strand at 2212.256 kb on + strand at 2212.256 kb on + strand at 2212.256 kb on + strand at 2212.256 kb on + strand at 2212.257 kb on - strand at 2212.257 kb on - strand at 2212.257 kb on - strand at 2212.372 kb on - strand, within DDA3937_RS09800 at 2212.374 kb on + strand, within DDA3937_RS09800 at 2212.374 kb on + strand, within DDA3937_RS09800 at 2212.375 kb on - strand, within DDA3937_RS09800 at 2212.420 kb on - strand, within DDA3937_RS09800 at 2212.420 kb on - strand, within DDA3937_RS09800 at 2212.572 kb on + strand, within DDA3937_RS09800 at 2212.699 kb on - strand, within DDA3937_RS09800 at 2212.813 kb on + strand, within DDA3937_RS09800 at 2212.889 kb on + strand, within DDA3937_RS09800 at 2212.889 kb on + strand, within DDA3937_RS09800 at 2212.890 kb on - strand, within DDA3937_RS09800 at 2212.890 kb on - strand, within DDA3937_RS09800 at 2212.892 kb on + strand, within DDA3937_RS09800 at 2212.893 kb on - strand, within DDA3937_RS09800 at 2212.977 kb on - strand, within DDA3937_RS09800 at 2213.096 kb on - strand at 2213.119 kb on - strand at 2213.119 kb on - strand at 2213.119 kb on - strand at 2213.119 kb on - strand at 2213.121 kb on + strand at 2213.122 kb on - strand at 2213.203 kb on + strand at 2213.204 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,211,689 + -0.3 2,211,689 + -0.5 2,211,691 + -0.4 2,211,692 - +0.3 2,211,692 - +0.3 2,211,697 + -0.1 2,211,982 + DDA3937_RS09795 0.54 -1.5 2,211,990 - DDA3937_RS09795 0.56 -0.3 2,212,009 + DDA3937_RS09795 0.59 -1.0 2,212,009 + DDA3937_RS09795 0.59 -2.0 2,212,009 + DDA3937_RS09795 0.59 -1.5 2,212,010 - -0.3 2,212,112 + DDA3937_RS09795 0.79 -0.1 2,212,112 + DDA3937_RS09795 0.79 -0.4 2,212,112 + DDA3937_RS09795 0.79 +0.1 2,212,113 - DDA3937_RS09795 0.79 +1.0 2,212,113 - DDA3937_RS09795 0.79 -0.4 2,212,113 - DDA3937_RS09795 0.79 -0.4 2,212,113 - DDA3937_RS09795 0.79 -0.3 2,212,113 - DDA3937_RS09795 0.79 -0.4 2,212,113 - DDA3937_RS09795 0.79 +0.3 2,212,114 + DDA3937_RS09795 0.79 -0.1 2,212,114 + DDA3937_RS09795 0.79 -0.7 2,212,114 + DDA3937_RS09795 0.79 -0.6 2,212,115 - DDA3937_RS09795 0.79 -2.7 2,212,211 + -0.5 2,212,256 + +0.2 2,212,256 + -0.1 2,212,256 + -0.2 2,212,256 + +0.9 2,212,256 + -0.3 2,212,256 + +0.6 2,212,256 + -1.7 2,212,257 - -1.3 2,212,257 - +0.5 2,212,257 - -1.7 2,212,372 - DDA3937_RS09800 0.19 -1.5 2,212,374 + DDA3937_RS09800 0.19 -0.7 2,212,374 + DDA3937_RS09800 0.19 -0.4 2,212,375 - DDA3937_RS09800 0.19 +2.0 2,212,420 - DDA3937_RS09800 0.24 +0.3 2,212,420 - DDA3937_RS09800 0.24 -0.3 2,212,572 + DDA3937_RS09800 0.41 -0.0 2,212,699 - DDA3937_RS09800 0.55 -0.7 2,212,813 + DDA3937_RS09800 0.67 +0.4 2,212,889 + DDA3937_RS09800 0.76 -0.7 2,212,889 + DDA3937_RS09800 0.76 -0.3 2,212,890 - DDA3937_RS09800 0.76 +0.1 2,212,890 - DDA3937_RS09800 0.76 +0.1 2,212,892 + DDA3937_RS09800 0.76 +1.6 2,212,893 - DDA3937_RS09800 0.76 -0.0 2,212,977 - DDA3937_RS09800 0.85 +0.9 2,213,096 - -1.4 2,213,119 - -0.4 2,213,119 - +0.3 2,213,119 - +0.1 2,213,119 - -0.7 2,213,121 + -0.6 2,213,122 - -1.0 2,213,203 + +0.4 2,213,204 - +1.9
Or see this region's nucleotide sequence