Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09580

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS09575 and DDA3937_RS09580 are separated by 19 nucleotidesDDA3937_RS09580 and DDA3937_RS09585 are separated by 228 nucleotides DDA3937_RS09575: DDA3937_RS09575 - cysteine/glutathione ABC transporter ATP-binding protein/permease CydC, at 2,155,847 to 2,157,568 _RS09575 DDA3937_RS09580: DDA3937_RS09580 - cysteine/glutathione ABC transporter permease/ATP-binding protein CydD, at 2,157,588 to 2,159,354 _RS09580 DDA3937_RS09585: DDA3937_RS09585 - thioredoxin-disulfide reductase, at 2,159,583 to 2,160,539 _RS09585 Position (kb) 2157 2158 2159 2160Strain fitness (log2 ratio) -3 -2 -1 0 1at 2157.616 kb on - strandat 2157.646 kb on - strandat 2157.707 kb on - strandat 2157.837 kb on + strand, within DDA3937_RS09580at 2158.027 kb on - strandat 2158.514 kb on - strand, within DDA3937_RS09580at 2158.556 kb on - strand, within DDA3937_RS09580at 2158.921 kb on + strand, within DDA3937_RS09580at 2159.380 kb on - strandat 2159.380 kb on - strandat 2159.397 kb on - strandat 2159.399 kb on - strandat 2159.400 kb on + strandat 2159.494 kb on + strandat 2159.522 kb on + strandat 2159.532 kb on - strandat 2159.532 kb on - strandat 2159.585 kb on - strandat 2159.585 kb on - strandat 2159.585 kb on - strandat 2159.930 kb on + strandat 2160.024 kb on + strand, within DDA3937_RS09585at 2160.025 kb on - strand, within DDA3937_RS09585at 2160.049 kb on + strand, within DDA3937_RS09585at 2160.050 kb on - strandat 2160.050 kb on - strand, within DDA3937_RS09585at 2160.335 kb on + strand, within DDA3937_RS09585at 2160.336 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,157,616 - -0.7
2,157,646 - -3.0
2,157,707 - -1.3
2,157,837 + DDA3937_RS09580 0.14 -0.1
2,158,027 - -0.7
2,158,514 - DDA3937_RS09580 0.52 -0.8
2,158,556 - DDA3937_RS09580 0.55 -1.7
2,158,921 + DDA3937_RS09580 0.75 -0.7
2,159,380 - -0.7
2,159,380 - -0.2
2,159,397 - -1.3
2,159,399 - -0.5
2,159,400 + +0.3
2,159,494 + -0.6
2,159,522 + -0.5
2,159,532 - -0.0
2,159,532 - -0.7
2,159,585 - +0.0
2,159,585 - +0.3
2,159,585 - -0.9
2,159,930 + -1.3
2,160,024 + DDA3937_RS09585 0.46 -0.6
2,160,025 - DDA3937_RS09585 0.46 +0.3
2,160,049 + DDA3937_RS09585 0.49 -1.3
2,160,050 - -1.7
2,160,050 - DDA3937_RS09585 0.49 -0.9
2,160,335 + DDA3937_RS09585 0.79 -2.0
2,160,336 - -1.3

Or see this region's nucleotide sequence