Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS09575 and DDA3937_RS09580 are separated by 19 nucleotides DDA3937_RS09580 and DDA3937_RS09585 are separated by 228 nucleotides
DDA3937_RS09575: DDA3937_RS09575 - cysteine/glutathione ABC transporter ATP-binding protein/permease CydC, at 2,155,847 to 2,157,568
_RS09575
DDA3937_RS09580: DDA3937_RS09580 - cysteine/glutathione ABC transporter permease/ATP-binding protein CydD, at 2,157,588 to 2,159,354
_RS09580
DDA3937_RS09585: DDA3937_RS09585 - thioredoxin-disulfide reductase, at 2,159,583 to 2,160,539
_RS09585
Position (kb)
2157
2158
2159
2160 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2157.616 kb on - strand at 2157.646 kb on - strand at 2157.707 kb on - strand at 2157.837 kb on + strand, within DDA3937_RS09580 at 2158.027 kb on - strand at 2158.514 kb on - strand, within DDA3937_RS09580 at 2158.556 kb on - strand, within DDA3937_RS09580 at 2158.921 kb on + strand, within DDA3937_RS09580 at 2159.380 kb on - strand at 2159.380 kb on - strand at 2159.397 kb on - strand at 2159.399 kb on - strand at 2159.400 kb on + strand at 2159.494 kb on + strand at 2159.522 kb on + strand at 2159.532 kb on - strand at 2159.532 kb on - strand at 2159.585 kb on - strand at 2159.585 kb on - strand at 2159.585 kb on - strand at 2159.930 kb on + strand at 2160.024 kb on + strand, within DDA3937_RS09585 at 2160.025 kb on - strand, within DDA3937_RS09585 at 2160.049 kb on + strand, within DDA3937_RS09585 at 2160.050 kb on - strand at 2160.050 kb on - strand, within DDA3937_RS09585 at 2160.335 kb on + strand, within DDA3937_RS09585 at 2160.336 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,157,616 - -0.7 2,157,646 - -3.0 2,157,707 - -1.3 2,157,837 + DDA3937_RS09580 0.14 -0.1 2,158,027 - -0.7 2,158,514 - DDA3937_RS09580 0.52 -0.8 2,158,556 - DDA3937_RS09580 0.55 -1.7 2,158,921 + DDA3937_RS09580 0.75 -0.7 2,159,380 - -0.7 2,159,380 - -0.2 2,159,397 - -1.3 2,159,399 - -0.5 2,159,400 + +0.3 2,159,494 + -0.6 2,159,522 + -0.5 2,159,532 - -0.0 2,159,532 - -0.7 2,159,585 - +0.0 2,159,585 - +0.3 2,159,585 - -0.9 2,159,930 + -1.3 2,160,024 + DDA3937_RS09585 0.46 -0.6 2,160,025 - DDA3937_RS09585 0.46 +0.3 2,160,049 + DDA3937_RS09585 0.49 -1.3 2,160,050 - -1.7 2,160,050 - DDA3937_RS09585 0.49 -0.9 2,160,335 + DDA3937_RS09585 0.79 -2.0 2,160,336 - -1.3
Or see this region's nucleotide sequence