Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS09565 and DDA3937_RS09570 are separated by 91 nucleotides DDA3937_RS09570 and DDA3937_RS09575 are separated by 12 nucleotides DDA3937_RS09575 and DDA3937_RS09580 are separated by 19 nucleotides
DDA3937_RS09565: DDA3937_RS09565 - translation initiation factor IF-1, at 2,154,796 to 2,155,014
_RS09565
DDA3937_RS09570: DDA3937_RS09570 - leucyl/phenylalanyl-tRNA--protein transferase, at 2,155,106 to 2,155,834
_RS09570
DDA3937_RS09575: DDA3937_RS09575 - cysteine/glutathione ABC transporter ATP-binding protein/permease CydC, at 2,155,847 to 2,157,568
_RS09575
DDA3937_RS09580: DDA3937_RS09580 - cysteine/glutathione ABC transporter permease/ATP-binding protein CydD, at 2,157,588 to 2,159,354
_RS09580
Position (kb)
2155
2156
2157
2158 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2155.093 kb on - strand at 2155.093 kb on - strand at 2155.111 kb on + strand at 2155.111 kb on + strand at 2155.112 kb on - strand at 2155.112 kb on - strand at 2155.255 kb on + strand, within DDA3937_RS09570 at 2155.255 kb on + strand, within DDA3937_RS09570 at 2155.255 kb on + strand, within DDA3937_RS09570 at 2155.256 kb on - strand, within DDA3937_RS09570 at 2155.402 kb on - strand, within DDA3937_RS09570 at 2155.402 kb on - strand, within DDA3937_RS09570 at 2155.474 kb on + strand, within DDA3937_RS09570 at 2155.475 kb on - strand, within DDA3937_RS09570 at 2155.476 kb on + strand, within DDA3937_RS09570 at 2155.476 kb on + strand, within DDA3937_RS09570 at 2155.477 kb on - strand, within DDA3937_RS09570 at 2155.477 kb on - strand, within DDA3937_RS09570 at 2155.477 kb on - strand, within DDA3937_RS09570 at 2155.477 kb on - strand, within DDA3937_RS09570 at 2155.477 kb on - strand, within DDA3937_RS09570 at 2155.699 kb on + strand, within DDA3937_RS09570 at 2155.699 kb on + strand, within DDA3937_RS09570 at 2155.718 kb on + strand, within DDA3937_RS09570 at 2155.718 kb on + strand, within DDA3937_RS09570 at 2155.824 kb on + strand at 2155.824 kb on + strand at 2155.825 kb on - strand at 2155.825 kb on - strand at 2155.848 kb on + strand at 2155.849 kb on - strand at 2156.296 kb on + strand, within DDA3937_RS09575 at 2157.616 kb on - strand at 2157.646 kb on - strand at 2157.707 kb on - strand at 2157.837 kb on + strand, within DDA3937_RS09580 at 2158.027 kb on - strand at 2158.514 kb on - strand, within DDA3937_RS09580 at 2158.556 kb on - strand, within DDA3937_RS09580
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,155,093 - -1.0 2,155,093 - +0.2 2,155,111 + +0.3 2,155,111 + +0.5 2,155,112 - -0.0 2,155,112 - -1.3 2,155,255 + DDA3937_RS09570 0.20 -0.4 2,155,255 + DDA3937_RS09570 0.20 -1.5 2,155,255 + DDA3937_RS09570 0.20 +0.6 2,155,256 - DDA3937_RS09570 0.21 +1.6 2,155,402 - DDA3937_RS09570 0.41 -0.5 2,155,402 - DDA3937_RS09570 0.41 -0.7 2,155,474 + DDA3937_RS09570 0.50 +0.3 2,155,475 - DDA3937_RS09570 0.51 +0.1 2,155,476 + DDA3937_RS09570 0.51 -1.0 2,155,476 + DDA3937_RS09570 0.51 +0.3 2,155,477 - DDA3937_RS09570 0.51 +0.1 2,155,477 - DDA3937_RS09570 0.51 +0.3 2,155,477 - DDA3937_RS09570 0.51 -1.1 2,155,477 - DDA3937_RS09570 0.51 +1.6 2,155,477 - DDA3937_RS09570 0.51 +1.0 2,155,699 + DDA3937_RS09570 0.81 -1.7 2,155,699 + DDA3937_RS09570 0.81 -1.4 2,155,718 + DDA3937_RS09570 0.84 -0.0 2,155,718 + DDA3937_RS09570 0.84 -0.0 2,155,824 + -0.4 2,155,824 + -0.5 2,155,825 - -0.1 2,155,825 - -1.0 2,155,848 + +2.6 2,155,849 - -0.9 2,156,296 + DDA3937_RS09575 0.26 -2.1 2,157,616 - -0.7 2,157,646 - -3.0 2,157,707 - -1.3 2,157,837 + DDA3937_RS09580 0.14 -0.1 2,158,027 - -0.7 2,158,514 - DDA3937_RS09580 0.52 -0.8 2,158,556 - DDA3937_RS09580 0.55 -1.7
Or see this region's nucleotide sequence