Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09575

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS09565 and DDA3937_RS09570 are separated by 91 nucleotidesDDA3937_RS09570 and DDA3937_RS09575 are separated by 12 nucleotidesDDA3937_RS09575 and DDA3937_RS09580 are separated by 19 nucleotides DDA3937_RS09565: DDA3937_RS09565 - translation initiation factor IF-1, at 2,154,796 to 2,155,014 _RS09565 DDA3937_RS09570: DDA3937_RS09570 - leucyl/phenylalanyl-tRNA--protein transferase, at 2,155,106 to 2,155,834 _RS09570 DDA3937_RS09575: DDA3937_RS09575 - cysteine/glutathione ABC transporter ATP-binding protein/permease CydC, at 2,155,847 to 2,157,568 _RS09575 DDA3937_RS09580: DDA3937_RS09580 - cysteine/glutathione ABC transporter permease/ATP-binding protein CydD, at 2,157,588 to 2,159,354 _RS09580 Position (kb) 2155 2156 2157 2158Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2155.093 kb on - strandat 2155.093 kb on - strandat 2155.111 kb on + strandat 2155.111 kb on + strandat 2155.112 kb on - strandat 2155.112 kb on - strandat 2155.255 kb on + strand, within DDA3937_RS09570at 2155.255 kb on + strand, within DDA3937_RS09570at 2155.255 kb on + strand, within DDA3937_RS09570at 2155.256 kb on - strand, within DDA3937_RS09570at 2155.402 kb on - strand, within DDA3937_RS09570at 2155.402 kb on - strand, within DDA3937_RS09570at 2155.474 kb on + strand, within DDA3937_RS09570at 2155.475 kb on - strand, within DDA3937_RS09570at 2155.476 kb on + strand, within DDA3937_RS09570at 2155.476 kb on + strand, within DDA3937_RS09570at 2155.477 kb on - strand, within DDA3937_RS09570at 2155.477 kb on - strand, within DDA3937_RS09570at 2155.477 kb on - strand, within DDA3937_RS09570at 2155.477 kb on - strand, within DDA3937_RS09570at 2155.477 kb on - strand, within DDA3937_RS09570at 2155.699 kb on + strand, within DDA3937_RS09570at 2155.699 kb on + strand, within DDA3937_RS09570at 2155.718 kb on + strand, within DDA3937_RS09570at 2155.718 kb on + strand, within DDA3937_RS09570at 2155.824 kb on + strandat 2155.824 kb on + strandat 2155.825 kb on - strandat 2155.825 kb on - strandat 2155.848 kb on + strandat 2155.849 kb on - strandat 2156.296 kb on + strand, within DDA3937_RS09575at 2157.616 kb on - strandat 2157.646 kb on - strandat 2157.707 kb on - strandat 2157.837 kb on + strand, within DDA3937_RS09580at 2158.027 kb on - strandat 2158.514 kb on - strand, within DDA3937_RS09580at 2158.556 kb on - strand, within DDA3937_RS09580

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,155,093 - -1.0
2,155,093 - +0.2
2,155,111 + +0.3
2,155,111 + +0.5
2,155,112 - -0.0
2,155,112 - -1.3
2,155,255 + DDA3937_RS09570 0.20 -0.4
2,155,255 + DDA3937_RS09570 0.20 -1.5
2,155,255 + DDA3937_RS09570 0.20 +0.6
2,155,256 - DDA3937_RS09570 0.21 +1.6
2,155,402 - DDA3937_RS09570 0.41 -0.5
2,155,402 - DDA3937_RS09570 0.41 -0.7
2,155,474 + DDA3937_RS09570 0.50 +0.3
2,155,475 - DDA3937_RS09570 0.51 +0.1
2,155,476 + DDA3937_RS09570 0.51 -1.0
2,155,476 + DDA3937_RS09570 0.51 +0.3
2,155,477 - DDA3937_RS09570 0.51 +0.1
2,155,477 - DDA3937_RS09570 0.51 +0.3
2,155,477 - DDA3937_RS09570 0.51 -1.1
2,155,477 - DDA3937_RS09570 0.51 +1.6
2,155,477 - DDA3937_RS09570 0.51 +1.0
2,155,699 + DDA3937_RS09570 0.81 -1.7
2,155,699 + DDA3937_RS09570 0.81 -1.4
2,155,718 + DDA3937_RS09570 0.84 -0.0
2,155,718 + DDA3937_RS09570 0.84 -0.0
2,155,824 + -0.4
2,155,824 + -0.5
2,155,825 - -0.1
2,155,825 - -1.0
2,155,848 + +2.6
2,155,849 - -0.9
2,156,296 + DDA3937_RS09575 0.26 -2.1
2,157,616 - -0.7
2,157,646 - -3.0
2,157,707 - -1.3
2,157,837 + DDA3937_RS09580 0.14 -0.1
2,158,027 - -0.7
2,158,514 - DDA3937_RS09580 0.52 -0.8
2,158,556 - DDA3937_RS09580 0.55 -1.7

Or see this region's nucleotide sequence