Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09550

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,150,561	+		DDA3937_RS09545	0.58	+0.7
2,150,562	-		DDA3937_RS09545	0.58	-0.0
2,150,643	+		DDA3937_RS09545	0.63	+1.1
2,150,643	+		DDA3937_RS09545	0.63	-0.1
2,150,643	+		DDA3937_RS09545	0.63	+0.3
2,150,644	-		DDA3937_RS09545	0.63	+0.5
2,150,644	-		DDA3937_RS09545	0.63	-1.6
2,150,644	-		DDA3937_RS09545	0.63	-0.7
2,150,644	-		DDA3937_RS09545	0.63	-1.0
2,150,690	+		DDA3937_RS09545	0.66	-1.3
2,150,690	+		DDA3937_RS09545	0.66	-0.3
2,150,691	-		DDA3937_RS09545	0.66	-0.1
2,150,709	-		DDA3937_RS09545	0.67	+0.9
2,150,726	-		DDA3937_RS09545	0.68	-0.7
2,150,726	-		DDA3937_RS09545	0.68	+1.6
2,150,883	-		DDA3937_RS09545	0.77	-0.3
2,150,883	-		DDA3937_RS09545	0.77	-1.3
2,150,934	+		DDA3937_RS09545	0.81	+0.0
2,151,010	+		DDA3937_RS09545	0.85	-0.7
2,151,010	+		DDA3937_RS09545	0.85	-0.5
2,151,010	+		DDA3937_RS09545	0.85	+0.5
2,151,010	+		DDA3937_RS09545	0.85	+0.2
2,151,014	+		DDA3937_RS09545	0.85	+1.2
2,151,014	+		DDA3937_RS09545	0.85	-0.1
2,151,014	+		DDA3937_RS09545	0.85	-0.4
2,151,014	+		DDA3937_RS09545	0.85	+1.0
2,151,015	-		DDA3937_RS09545	0.85	+0.5
2,151,015	-		DDA3937_RS09545	0.85	-2.0
2,151,015	-		DDA3937_RS09545	0.85	-0.1
2,151,015	-		DDA3937_RS09545	0.85	+0.3
2,151,015	-		DDA3937_RS09545	0.85	-1.0
2,151,030	+		DDA3937_RS09545	0.86	-0.1
2,151,031	-		DDA3937_RS09545	0.86	-0.6
2,151,045	-		DDA3937_RS09545	0.87	-0.2
2,151,074	-		DDA3937_RS09545	0.89	-0.4
2,151,212	+				+0.9
2,151,256	-				-0.3
2,151,264	+				-1.3
2,151,265	-				-0.3
2,151,355	+				-0.9
2,151,359	+				-2.7
2,151,360	-				-0.0
2,151,360	-				-0.4
2,151,517	-		DDA3937_RS09550	0.55	-0.3
2,151,564	+		DDA3937_RS09550	0.77	-0.8
2,151,565	-		DDA3937_RS09550	0.77	-0.2
2,151,565	-		DDA3937_RS09550	0.77	-0.5
2,151,565	-		DDA3937_RS09550	0.77	-1.2
2,151,565	-		DDA3937_RS09550	0.77	-0.9
2,151,597	+				-1.3
2,151,597	+				-0.5
2,151,598	-				-0.9
2,151,598	-				+0.6
2,151,598	-				-2.4
2,151,598	-				-0.6
2,151,603	+				+0.9
2,151,603	+				-1.1
2,151,603	+				+0.3
2,151,604	-				-1.0
2,151,633	+				-1.0
2,151,634	-				-1.5
2,151,645	+				+0.3
2,151,645	+				+0.3
2,151,646	-				+0.5
2,151,706	+				-1.5
2,151,707	-				-0.1
2,151,707	-				+0.3
2,151,714	-				-0.7
2,151,781	-				-0.3
2,151,806	-				+1.1
2,151,867	+				+0.3
2,151,868	-				-0.3
2,151,868	-				-0.0
2,151,910	+				-0.9
2,151,911	-				+0.3
2,151,915	-				-1.9
2,151,932	+				-1.3
2,151,949	+				-0.5
2,151,950	-				-1.0
2,151,950	-				-1.3
2,151,950	-				+0.8
2,151,952	+				-0.5
2,151,952	+				+0.5
2,151,988	+		DDA3937_RS09555	0.16	+0.5
2,151,988	+		DDA3937_RS09555	0.16	+0.5
2,151,989	-		DDA3937_RS09555	0.16	+0.9
2,151,989	-		DDA3937_RS09555	0.16	-2.3
2,151,989	-		DDA3937_RS09555	0.16	-1.2
2,151,989	-		DDA3937_RS09555	0.16	-1.3
2,152,002	+		DDA3937_RS09555	0.20	-0.3
2,152,019	+		DDA3937_RS09555	0.25	+1.3
2,152,021	+		DDA3937_RS09555	0.26	+0.0
2,152,021	+		DDA3937_RS09555	0.26	-0.0
2,152,022	-		DDA3937_RS09555	0.26	-0.1
2,152,030	-		DDA3937_RS09555	0.29	+0.6
2,152,030	-		DDA3937_RS09555	0.29	-0.3
2,152,030	-		DDA3937_RS09555	0.29	-2.1
2,152,033	+		DDA3937_RS09555	0.30	+0.2
2,152,033	+		DDA3937_RS09555	0.30	-0.2
2,152,033	+		DDA3937_RS09555	0.30	+0.7
2,152,034	-		DDA3937_RS09555	0.30	-0.5
2,152,034	-		DDA3937_RS09555	0.30	+0.3
2,152,034	-		DDA3937_RS09555	0.30	+0.3
2,152,034	-		DDA3937_RS09555	0.30	+0.3
2,152,047	-		DDA3937_RS09555	0.34	+1.6
2,152,047	-		DDA3937_RS09555	0.34	+0.3
2,152,067	-		DDA3937_RS09555	0.40	-0.7
2,152,094	+		DDA3937_RS09555	0.49	+0.7
2,152,095	-		DDA3937_RS09555	0.49	+0.4
2,152,095	-		DDA3937_RS09555	0.49	-0.4
2,152,100	-		DDA3937_RS09555	0.50	+0.3
2,152,126	+		DDA3937_RS09555	0.59	-0.7
2,152,127	-		DDA3937_RS09555	0.59	-0.3
2,152,127	-		DDA3937_RS09555	0.59	-0.5
2,152,127	-		DDA3937_RS09555	0.59	-0.0
2,152,127	-		DDA3937_RS09555	0.59	-0.3
2,152,136	+		DDA3937_RS09555	0.62	-0.1
2,152,136	+		DDA3937_RS09555	0.62	-0.1
2,152,137	-		DDA3937_RS09555	0.62	-0.2
2,152,164	-		DDA3937_RS09555	0.70	+0.2
2,152,240	+				+0.5
2,152,240	+				-0.1
2,152,241	-				+0.4
2,152,241	-				+0.0
2,152,260	+				-0.6
2,152,287	-				-0.7
2,152,358	+				+1.3
2,152,358	+				-1.1
2,152,359	-				-0.3
2,152,359	-				-0.9
2,152,428	-				-0.6
2,152,488	-				-0.8
2,152,531	+		DDA3937_RS09560	0.11	-0.7
2,152,531	+		DDA3937_RS09560	0.11	-0.6
2,152,531	+		DDA3937_RS09560	0.11	-1.7