Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09485

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,135,817	+		DDA3937_RS09475	0.73	-0.5
2,135,817	+		DDA3937_RS09475	0.73	+0.3
2,135,818	-		DDA3937_RS09475	0.73	-0.6
2,135,903	+		DDA3937_RS09475	0.83	+0.6
2,135,948	+		DDA3937_RS09475	0.88	-0.3
2,135,949	-		DDA3937_RS09475	0.88	+0.6
2,136,098	+				+0.6
2,136,098	+				+0.9
2,136,099	-				+0.7
2,136,139	+				+1.3
2,136,139	+				-0.3
2,136,139	+				+0.3
2,136,139	+				-0.7
2,136,140	-				-2.0
2,136,140	-				-0.1
2,136,140	-				+1.3
2,136,140	-				-2.5
2,136,140	-				+0.3
2,136,140	-				+0.9
2,136,140	-				+0.0
2,136,141	-				-0.7
2,136,145	-				+0.4
2,136,145	-				+1.0
2,136,266	-		DDA3937_RS09480	0.21	-1.7
2,136,438	+		DDA3937_RS09480	0.60	+1.4
2,136,438	+		DDA3937_RS09480	0.60	-1.0
2,136,438	+		DDA3937_RS09480	0.60	-0.7
2,136,438	+		DDA3937_RS09480	0.60	-0.4
2,136,438	+		DDA3937_RS09480	0.60	-0.6
2,136,439	-		DDA3937_RS09480	0.61	-0.6
2,136,439	-		DDA3937_RS09480	0.61	+0.6
2,136,439	-		DDA3937_RS09480	0.61	+0.0
2,136,439	-		DDA3937_RS09480	0.61	+1.0
2,136,439	-		DDA3937_RS09480	0.61	+0.4
2,136,439	-		DDA3937_RS09480	0.61	+0.1
2,136,439	-				+0.9
2,136,439	-		DDA3937_RS09480	0.61	-0.2
2,136,610	-				-0.3
2,136,617	-				-1.5
2,136,630	-				+0.1
2,136,637	-				-0.9
2,136,649	+				-0.8
2,136,671	+				-1.7
2,136,672	-				-0.7
2,136,672	-				+0.6
2,136,733	+				+0.3
2,136,734	-				-1.7
2,136,736	-				-0.3
2,136,798	+				-1.6
2,137,011	+		DDA3937_RS09485	0.26	-1.0
2,137,017	-		DDA3937_RS09485	0.26	-0.0
2,137,017	-		DDA3937_RS09485	0.26	-0.9
2,137,054	+		DDA3937_RS09485	0.30	-0.6
2,137,055	-		DDA3937_RS09485	0.30	-0.9
2,137,087	+		DDA3937_RS09485	0.33	+1.0
2,137,087	+		DDA3937_RS09485	0.33	-1.5
2,137,088	-		DDA3937_RS09485	0.33	-0.7
2,137,190	+		DDA3937_RS09485	0.42	+0.4
2,137,190	+		DDA3937_RS09485	0.42	+2.3
2,137,191	-		DDA3937_RS09485	0.42	+0.0
2,137,327	+		DDA3937_RS09485	0.54	-0.7
2,137,327	+		DDA3937_RS09485	0.54	+0.3
2,137,327	+		DDA3937_RS09485	0.54	-0.0
2,137,328	-		DDA3937_RS09485	0.54	-0.7
2,137,328	-		DDA3937_RS09485	0.54	+0.3
2,137,328	-		DDA3937_RS09485	0.54	-0.6
2,137,328	-		DDA3937_RS09485	0.54	-3.6
2,137,381	+		DDA3937_RS09485	0.59	-0.5
2,137,381	+		DDA3937_RS09485	0.59	-0.5
2,137,381	+		DDA3937_RS09485	0.59	-0.6
2,137,381	+		DDA3937_RS09485	0.59	-0.7
2,137,382	-		DDA3937_RS09485	0.59	-0.5
2,137,382	-		DDA3937_RS09485	0.59	+0.9
2,137,382	-		DDA3937_RS09485	0.59	-0.8
2,137,382	-				+2.6
2,137,382	-		DDA3937_RS09485	0.59	-0.7
2,137,676	-		DDA3937_RS09485	0.85	-0.5
2,137,700	-		DDA3937_RS09485	0.87	-0.3
2,137,700	-		DDA3937_RS09485	0.87	-0.8
2,137,708	+		DDA3937_RS09485	0.88	-0.7
2,137,708	+				-0.3
2,137,709	-		DDA3937_RS09485	0.88	-0.7
2,137,709	-		DDA3937_RS09485	0.88	+0.2
2,137,709	-		DDA3937_RS09485	0.88	-2.5
2,137,743	+				-0.9
2,137,743	+				+0.2
2,137,744	-				+0.3
2,137,763	-				+0.7
2,137,769	+				+1.1
2,137,770	-				-0.7
2,137,770	-				+0.2
2,137,791	+				-1.5
2,137,792	-				-0.2
2,137,792	-				-0.3
2,137,792	-				-1.0
2,137,792	-				-0.3
2,137,814	-				-0.5
2,137,814	-				-0.0
2,137,814	-				+0.1
2,137,814	-				-0.7
2,137,934	+				-0.7
2,138,011	+		DDA3937_RS09490	0.13	-1.5
2,138,107	+		DDA3937_RS09490	0.21	-0.5
2,138,108	-		DDA3937_RS09490	0.21	-2.0
2,138,108	-		DDA3937_RS09490	0.21	-1.1
2,138,108	-		DDA3937_RS09490	0.21	-3.4
2,138,108	-		DDA3937_RS09490	0.21	-0.1
2,138,131	+		DDA3937_RS09490	0.23	-0.1
2,138,134	+		DDA3937_RS09490	0.23	-0.2
2,138,211	+		DDA3937_RS09490	0.29	+1.1
2,138,211	+				-1.3
2,138,212	-		DDA3937_RS09490	0.29	-0.2
2,138,352	+		DDA3937_RS09490	0.41	-0.4
2,138,367	+		DDA3937_RS09490	0.42	+0.6
2,138,367	+		DDA3937_RS09490	0.42	+0.3
2,138,367	+		DDA3937_RS09490	0.42	-0.5
2,138,368	-		DDA3937_RS09490	0.42	-1.2
2,138,368	-		DDA3937_RS09490	0.42	+1.7
2,138,419	+		DDA3937_RS09490	0.47	-0.5
2,138,419	+		DDA3937_RS09490	0.47	+0.6
2,138,419	+		DDA3937_RS09490	0.47	+1.6
2,138,420	-		DDA3937_RS09490	0.47	+0.4
2,138,420	-		DDA3937_RS09490	0.47	-1.3
2,138,563	+		DDA3937_RS09490	0.59	-0.7
2,138,563	+		DDA3937_RS09490	0.59	-1.0
2,138,563	+		DDA3937_RS09490	0.59	+0.1
2,138,569	+		DDA3937_RS09490	0.59	+0.2
2,138,795	+		DDA3937_RS09490	0.78	+0.7
2,138,831	+		DDA3937_RS09490	0.81	-0.5