Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS09340 and DDA3937_RS09345 are separated by 354 nucleotides DDA3937_RS09345 and DDA3937_RS09350 are separated by 676 nucleotides
DDA3937_RS09340: DDA3937_RS09340 - IS110-like element ISEch3 family transposase, at 2,101,727 to 2,102,746
_RS09340
DDA3937_RS09345: DDA3937_RS09345 - IS200/IS605 family transposase, at 2,103,101 to 2,103,559
_RS09345
DDA3937_RS09350: DDA3937_RS09350 - Tar ligand binding domain-containing protein, at 2,104,236 to 2,105,909
_RS09350
Position (kb)
2103
2104 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2102.905 kb on + strand at 2102.905 kb on + strand at 2102.905 kb on + strand at 2102.905 kb on + strand at 2102.964 kb on - strand at 2102.979 kb on - strand at 2102.979 kb on - strand at 2103.189 kb on - strand, within DDA3937_RS09345 at 2103.650 kb on + strand at 2103.662 kb on + strand at 2103.662 kb on + strand at 2103.666 kb on + strand at 2103.666 kb on + strand at 2103.690 kb on + strand at 2103.690 kb on + strand at 2103.690 kb on + strand at 2103.691 kb on - strand at 2103.691 kb on - strand at 2103.691 kb on - strand at 2103.691 kb on - strand at 2103.691 kb on - strand at 2103.691 kb on - strand at 2103.691 kb on - strand at 2103.748 kb on + strand at 2103.748 kb on + strand at 2103.749 kb on - strand at 2103.749 kb on - strand at 2103.798 kb on + strand at 2103.820 kb on + strand at 2103.824 kb on + strand at 2103.825 kb on - strand at 2103.845 kb on - strand at 2103.845 kb on - strand at 2103.854 kb on + strand at 2103.871 kb on - strand at 2103.881 kb on + strand at 2103.884 kb on - strand at 2103.912 kb on + strand at 2104.043 kb on + strand at 2104.128 kb on + strand at 2104.149 kb on + strand at 2104.164 kb on - strand at 2104.164 kb on - strand at 2104.164 kb on - strand at 2104.193 kb on + strand at 2104.194 kb on - strand at 2104.197 kb on - strand at 2104.197 kb on - strand at 2104.253 kb on + strand at 2104.325 kb on + strand at 2104.332 kb on + strand at 2104.332 kb on + strand at 2104.332 kb on + strand at 2104.357 kb on + strand at 2104.360 kb on + strand at 2104.420 kb on - strand, within DDA3937_RS09350 at 2104.439 kb on + strand, within DDA3937_RS09350 at 2104.440 kb on - strand, within DDA3937_RS09350 at 2104.460 kb on + strand, within DDA3937_RS09350 at 2104.460 kb on + strand, within DDA3937_RS09350 at 2104.462 kb on + strand, within DDA3937_RS09350 at 2104.550 kb on + strand, within DDA3937_RS09350 at 2104.550 kb on + strand, within DDA3937_RS09350 at 2104.557 kb on - strand, within DDA3937_RS09350
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,102,905 + +0.9 2,102,905 + -0.1 2,102,905 + -0.9 2,102,905 + +0.5 2,102,964 - -0.2 2,102,979 - +0.6 2,102,979 - -0.2 2,103,189 - DDA3937_RS09345 0.19 -0.7 2,103,650 + +0.6 2,103,662 + -0.5 2,103,662 + -0.3 2,103,666 + -1.4 2,103,666 + -1.7 2,103,690 + +1.9 2,103,690 + -0.6 2,103,690 + +0.6 2,103,691 - -0.7 2,103,691 - -0.7 2,103,691 - -0.6 2,103,691 - +0.6 2,103,691 - +0.2 2,103,691 - -1.6 2,103,691 - +0.3 2,103,748 + -0.2 2,103,748 + +0.6 2,103,749 - -2.0 2,103,749 - +0.0 2,103,798 + -1.0 2,103,820 + +0.3 2,103,824 + +1.5 2,103,825 - -1.7 2,103,845 - -1.5 2,103,845 - -0.2 2,103,854 + -0.5 2,103,871 - -0.2 2,103,881 + -0.8 2,103,884 - -0.1 2,103,912 + +0.2 2,104,043 + +0.0 2,104,128 + -0.7 2,104,149 + -0.9 2,104,164 - -1.0 2,104,164 - -0.1 2,104,164 - -1.7 2,104,193 + +0.1 2,104,194 - -1.8 2,104,197 - -1.0 2,104,197 - -0.7 2,104,253 + +0.6 2,104,325 + -1.5 2,104,332 + -2.7 2,104,332 + +0.1 2,104,332 + +1.3 2,104,357 + +0.5 2,104,360 + +0.9 2,104,420 - DDA3937_RS09350 0.11 +0.3 2,104,439 + DDA3937_RS09350 0.12 -1.6 2,104,440 - DDA3937_RS09350 0.12 -0.0 2,104,460 + DDA3937_RS09350 0.13 +0.3 2,104,460 + DDA3937_RS09350 0.13 -0.9 2,104,462 + DDA3937_RS09350 0.14 -0.5 2,104,550 + DDA3937_RS09350 0.19 -0.0 2,104,550 + DDA3937_RS09350 0.19 -0.5 2,104,557 - DDA3937_RS09350 0.19 -0.4
Or see this region's nucleotide sequence