Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09190

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,063,755	+		DDA3937_RS09185	0.12	-1.0
2,063,755	+		DDA3937_RS09185	0.12	+0.8
2,063,755	+		DDA3937_RS09185	0.12	-0.6
2,063,756	-		DDA3937_RS09185	0.12	-0.1
2,063,756	-		DDA3937_RS09185	0.12	+0.7
2,063,756	-		DDA3937_RS09185	0.12	+0.4
2,063,756	-		DDA3937_RS09185	0.12	+0.1
2,063,826	+		DDA3937_RS09185	0.18	-1.8
2,063,948	+		DDA3937_RS09185	0.29	-1.2
2,063,948	+		DDA3937_RS09185	0.29	-2.0
2,063,948	+		DDA3937_RS09185	0.29	-0.7
2,063,948	+		DDA3937_RS09185	0.29	-0.7
2,063,948	+		DDA3937_RS09185	0.29	-0.9
2,063,948	+		DDA3937_RS09185	0.29	-1.7
2,063,949	-				+1.3
2,063,949	-		DDA3937_RS09185	0.29	+0.3
2,063,949	-		DDA3937_RS09185	0.29	-1.1
2,063,949	-		DDA3937_RS09185	0.29	+0.6
2,064,053	+		DDA3937_RS09185	0.39	-0.7
2,064,132	-		DDA3937_RS09185	0.46	+1.3
2,064,202	-		DDA3937_RS09185	0.52	+0.6
2,064,202	-		DDA3937_RS09185	0.52	+0.3
2,064,205	+		DDA3937_RS09185	0.53	-0.6
2,064,206	-		DDA3937_RS09185	0.53	-0.8
2,064,206	-		DDA3937_RS09185	0.53	-0.4
2,064,210	+		DDA3937_RS09185	0.53	-1.3
2,064,210	+		DDA3937_RS09185	0.53	-0.3
2,064,211	-		DDA3937_RS09185	0.53	+0.3
2,064,211	-		DDA3937_RS09185	0.53	-0.0
2,064,211	-		DDA3937_RS09185	0.53	+0.6
2,064,281	+		DDA3937_RS09185	0.60	-0.0
2,064,281	+		DDA3937_RS09185	0.60	+0.3
2,064,281	+		DDA3937_RS09185	0.60	+0.1
2,064,282	-		DDA3937_RS09185	0.60	+0.3
2,064,312	-		DDA3937_RS09185	0.62	-1.2
2,064,328	-		DDA3937_RS09185	0.64	+0.7
2,064,328	-		DDA3937_RS09185	0.64	+0.4
2,064,391	+		DDA3937_RS09185	0.70	-0.2
2,064,392	-		DDA3937_RS09185	0.70	-0.7
2,064,392	-		DDA3937_RS09185	0.70	+0.5
2,064,396	-				+0.3
2,064,396	-		DDA3937_RS09185	0.70	+0.6
2,064,396	-		DDA3937_RS09185	0.70	-1.0
2,064,435	+		DDA3937_RS09185	0.74	-1.5
2,064,500	+		DDA3937_RS09185	0.80	+0.7
2,064,649	-				+0.1
2,064,697	+				-1.1
2,064,697	+				-1.1
2,064,698	-				+0.1
2,064,698	-				+0.2
2,064,713	+				-0.0
2,064,713	+				-0.8
2,064,714	-				+0.0
2,064,766	-				-1.8
2,064,777	-				+0.2
2,064,777	-				+0.3
2,064,777	-				+0.5
2,064,801	+				-0.1
2,064,802	-				+0.7
2,064,803	+				+1.1
2,064,803	+				-0.1
2,064,803	+				-0.3
2,064,804	-				-0.8
2,064,835	-				-0.5
2,064,866	+				+1.5
2,064,867	-				+1.7
2,064,877	+				+1.6
2,065,012	-		DDA3937_RS09190	0.15	+1.4
2,065,013	+		DDA3937_RS09190	0.15	+0.7
2,065,013	+		DDA3937_RS09190	0.15	+1.5
2,065,013	+		DDA3937_RS09190	0.15	+0.5
2,065,013	+		DDA3937_RS09190	0.15	+0.3
2,065,014	-		DDA3937_RS09190	0.15	+1.6
2,065,014	-		DDA3937_RS09190	0.15	-0.2
2,065,014	-		DDA3937_RS09190	0.15	-1.0
2,065,026	+				-1.3
2,065,026	+		DDA3937_RS09190	0.16	-0.5
2,065,027	-		DDA3937_RS09190	0.16	-0.4
2,065,027	-		DDA3937_RS09190	0.16	-1.0
2,065,027	-		DDA3937_RS09190	0.16	-0.9
2,065,186	-		DDA3937_RS09190	0.25	-0.8
2,065,186	-		DDA3937_RS09190	0.25	+0.5
2,065,186	-		DDA3937_RS09190	0.25	-1.3
2,065,186	-		DDA3937_RS09190	0.25	-0.1
2,065,205	+		DDA3937_RS09190	0.26	-0.7
2,065,205	+		DDA3937_RS09190	0.26	-0.4
2,065,205	+		DDA3937_RS09190	0.26	+0.4
2,065,205	+		DDA3937_RS09190	0.26	+0.0
2,065,205	+		DDA3937_RS09190	0.26	-0.2
2,065,206	-		DDA3937_RS09190	0.26	+0.9
2,065,206	-		DDA3937_RS09190	0.26	-0.5
2,065,206	-		DDA3937_RS09190	0.26	-0.2
2,065,206	-		DDA3937_RS09190	0.26	+0.0
2,065,505	+		DDA3937_RS09190	0.43	+3.2
2,065,505	+				+1.9
2,065,505	+		DDA3937_RS09190	0.43	-0.6
2,065,505	+		DDA3937_RS09190	0.43	-0.8
2,065,506	-		DDA3937_RS09190	0.43	+0.3
2,065,506	-		DDA3937_RS09190	0.43	-0.7
2,065,506	-		DDA3937_RS09190	0.43	+0.9
2,065,506	-		DDA3937_RS09190	0.43	+0.7
2,065,512	+		DDA3937_RS09190	0.43	+0.3
2,065,528	-		DDA3937_RS09190	0.44	-0.5
2,065,605	+		DDA3937_RS09190	0.48	-0.3
2,065,680	+		DDA3937_RS09190	0.52	+0.6
2,065,692	-		DDA3937_RS09190	0.53	+0.9
2,065,766	-		DDA3937_RS09190	0.57	-1.3
2,065,781	+		DDA3937_RS09190	0.58	+0.1
2,065,781	+		DDA3937_RS09190	0.58	-1.3
2,065,782	-		DDA3937_RS09190	0.58	-0.3
2,065,782	-		DDA3937_RS09190	0.58	+0.3
2,065,782	-		DDA3937_RS09190	0.58	-0.4
2,065,784	+		DDA3937_RS09190	0.58	+0.4
2,065,784	+		DDA3937_RS09190	0.58	+0.8
2,065,791	-		DDA3937_RS09190	0.58	+0.6
2,065,848	-		DDA3937_RS09190	0.61	+0.4
2,065,866	-		DDA3937_RS09190	0.62	-0.2
2,065,875	-		DDA3937_RS09190	0.63	-2.0
2,065,875	-		DDA3937_RS09190	0.63	-0.3
2,065,875	-		DDA3937_RS09190	0.63	-1.6
2,066,031	+		DDA3937_RS09190	0.72	-1.0
2,066,032	-		DDA3937_RS09190	0.72	+0.3
2,066,078	+		DDA3937_RS09190	0.74	+1.4
2,066,079	-		DDA3937_RS09190	0.74	+0.0
2,066,079	-		DDA3937_RS09190	0.74	+1.3
2,066,079	-		DDA3937_RS09190	0.74	+1.1
2,066,081	+		DDA3937_RS09190	0.74	+1.2
2,066,081	+		DDA3937_RS09190	0.74	+0.2
2,066,118	+		DDA3937_RS09190	0.76	-0.2
2,066,118	+		DDA3937_RS09190	0.76	+1.0
2,066,118	+		DDA3937_RS09190	0.76	-0.3
2,066,118	+		DDA3937_RS09190	0.76	-1.6
2,066,118	+		DDA3937_RS09190	0.76	+1.3
2,066,118	+		DDA3937_RS09190	0.76	+1.3
2,066,118	+		DDA3937_RS09190	0.76	+0.0
2,066,118	+		DDA3937_RS09190	0.76	-2.3
2,066,118	+		DDA3937_RS09190	0.76	+1.4
2,066,119	-		DDA3937_RS09190	0.76	-0.7
2,066,119	-		DDA3937_RS09190	0.76	-1.0
2,066,119	-		DDA3937_RS09190	0.76	-0.0
2,066,119	-		DDA3937_RS09190	0.76	+0.0
2,066,119	-		DDA3937_RS09190	0.76	-2.4
2,066,191	+		DDA3937_RS09190	0.80	-0.7
2,066,191	+		DDA3937_RS09190	0.80	+1.5
2,066,192	-		DDA3937_RS09190	0.80	-1.0
2,066,192	-		DDA3937_RS09190	0.80	+1.5
2,066,208	-		DDA3937_RS09190	0.81	+0.3
2,066,208	-		DDA3937_RS09190	0.81	-0.6
2,066,208	-		DDA3937_RS09190	0.81	-1.0
2,066,246	+		DDA3937_RS09190	0.83	-0.9
2,066,279	+		DDA3937_RS09190	0.85	+0.2
2,066,280	-		DDA3937_RS09190	0.85	-0.5
2,066,291	+		DDA3937_RS09190	0.86	+1.5
2,066,291	+		DDA3937_RS09190	0.86	+1.1
2,066,408	+				-0.4
2,066,408	+				+0.3
2,066,408	+				+0.8
2,066,421	+				-0.8
2,066,435	+				+3.1
2,066,465	+				+0.1
2,066,465	+				-0.3
2,066,465	+				-0.1
2,066,465	+				+1.1
2,066,465	+				-1.7
2,066,465	+				-0.3
2,066,466	-				-0.1
2,066,466	-				+0.1
2,066,466	-				+1.0
2,066,466	-				+0.3
2,066,492	+				-0.3
2,066,493	-				-0.4
2,066,493	-				-0.2
2,066,529	+				-0.2
2,066,539	+				+0.2
2,066,540	-				-0.8
2,066,540	-				+0.3
2,066,541	+				+0.7
2,066,541	+				+0.1
2,066,542	-				-0.7
2,066,542	-				-0.8
2,066,662	+				-0.2
2,066,672	+				+0.2
2,066,672	+				+0.1
2,066,732	-				+0.7
2,066,857	-		DDA3937_RS09195	0.10	+2.8
2,066,857	-		DDA3937_RS09195	0.10	+0.3
2,066,857	-		DDA3937_RS09195	0.10	+0.3
2,066,929	-				+0.3
2,066,929	-		DDA3937_RS09195	0.23	-0.7
2,066,992	+		DDA3937_RS09195	0.34	-2.3
2,066,993	-		DDA3937_RS09195	0.34	+0.3
2,066,993	-		DDA3937_RS09195	0.34	-0.3
2,067,224	+		DDA3937_RS09195	0.74	+0.9
2,067,225	-		DDA3937_RS09195	0.74	-2.3
2,067,225	-		DDA3937_RS09195	0.74	-0.2
2,067,343	+				-1.2
2,067,343	+				-1.5
2,067,344	-				-0.5
2,067,346	-				+1.1
2,067,346	-				-0.7
2,067,346	-				-1.1
2,067,346	-				-0.6
2,067,380	+				+3.3
2,067,380	+				-1.8
2,067,380	+				-1.5
2,067,380	+				-0.2
2,067,381	-				-1.3
2,067,381	-				-0.9
2,067,426	+				-0.7
2,067,426	+				+1.1
2,067,429	+				-1.0
2,067,430	-				+0.9
2,067,437	+				+0.3
2,067,438	-				-0.3
2,067,438	-				-0.3
2,067,438	-				-0.1
2,067,438	-				-0.7
2,067,438	-				+1.0
2,067,441	+				-2.0
2,067,441	+				-0.7
2,067,442	-				-0.4
2,067,473	+				-1.8
2,067,474	-				+0.0
2,067,494	+				-1.0
2,067,495	-				-0.2
2,067,495	-				+0.6
2,067,495	-				-2.5
2,067,521	-				-1.5
2,067,529	-				-0.7
2,067,547	-				-1.1
2,067,547	-				-0.3