Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08395

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,900,158	-		DDA3937_RS08385	0.87	-1.2
1,900,203	+				+0.6
1,900,203	+				+0.2
1,900,204	-				+1.1
1,900,204	-				+0.1
1,900,204	-				-0.1
1,900,204	-				-1.5
1,900,204	-				-0.6
1,900,204	-				-1.5
1,900,207	-				+0.4
1,900,207	-				+0.4
1,900,228	+				+0.4
1,900,229	-				-1.9
1,900,255	+				+0.5
1,900,256	-				-0.8
1,900,256	-				-0.4
1,900,256	-				+0.7
1,900,256	-				-0.6
1,900,256	-				+0.1
1,900,256	-				-0.2
1,900,256	-				-0.6
1,900,263	+				+0.4
1,900,263	+				+1.0
1,900,263	+				+0.6
1,900,263	+				+1.6
1,900,263	+				-0.3
1,900,263	+				-1.0
1,900,263	+				-0.1
1,900,263	+				+0.2
1,900,263	+				-0.4
1,900,263	+				-1.4
1,900,263	+				-1.9
1,900,264	-				-1.1
1,900,264	-				+0.6
1,900,264	-				+0.4
1,900,264	-				+0.5
1,900,264	-				+0.0
1,900,264	-				+1.0
1,900,264	-				-0.9
1,900,264	-				-1.9
1,900,264	-				-0.6
1,900,275	+				+0.4
1,900,275	+				-1.4
1,900,277	+				-0.4
1,900,290	-				-0.0
1,900,293	-				+0.8
1,900,293	-				+0.8
1,900,293	-				-0.9
1,900,297	+				+1.1
1,900,354	-				+0.4
1,900,354	-				-1.5
1,900,358	+				-1.9
1,900,397	+				-1.3
1,900,397	+				-0.2
1,900,397	+				-0.8
1,900,397	+				+0.4
1,900,397	+				+0.8
1,900,397	+				-1.9
1,900,397	+				-0.9
1,900,398	-				+0.4
1,900,398	-				-0.8
1,900,399	+				-1.0
1,900,399	+				-0.5
1,900,399	+				-0.4
1,900,399	+				+0.7
1,900,400	-				+1.7
1,900,400	-				+0.2
1,900,418	-				+1.4
1,900,500	-		DDA3937_RS08390	0.15	+0.4
1,900,510	+		DDA3937_RS08390	0.16	-0.7
1,900,521	+		DDA3937_RS08390	0.18	-1.3
1,900,592	-		DDA3937_RS08390	0.31	+1.2
1,900,652	+		DDA3937_RS08390	0.43	-0.6
1,900,701	+		DDA3937_RS08390	0.52	+0.1
1,900,702	-		DDA3937_RS08390	0.52	-0.1
1,900,778	+		DDA3937_RS08390	0.66	-0.5
1,900,778	+		DDA3937_RS08390	0.66	-0.7
1,900,778	+		DDA3937_RS08390	0.66	-2.6
1,900,779	-		DDA3937_RS08390	0.66	-1.0
1,900,779	-		DDA3937_RS08390	0.66	-1.4
1,900,793	+		DDA3937_RS08390	0.69	-0.4
1,900,793	+		DDA3937_RS08390	0.69	+0.3
1,900,837	+		DDA3937_RS08390	0.77	-0.5
1,900,875	-		DDA3937_RS08390	0.84	-1.8
1,900,875	-		DDA3937_RS08390	0.84	+2.2
1,900,950	+				-0.2
1,900,950	+				+0.6
1,900,951	-				+0.4
1,900,951	-				+0.4
1,900,954	+				-1.0
1,900,955	-				-0.4
1,900,955	-				+0.5
1,901,001	-				-1.4
1,901,005	-				-1.2
1,901,108	+				+0.2
1,901,248	-		DDA3937_RS08395	0.15	+0.8
1,901,257	+		DDA3937_RS08395	0.15	-1.3
1,901,258	-		DDA3937_RS08395	0.15	-0.4
1,901,268	-				-1.9
1,901,459	+		DDA3937_RS08395	0.34	-1.9
1,901,484	-				+0.4
1,901,514	-		DDA3937_RS08395	0.39	-1.8
1,901,590	+		DDA3937_RS08395	0.46	-0.4
1,901,738	+		DDA3937_RS08395	0.59	-0.6
1,901,998	+		DDA3937_RS08395	0.83	-0.6
1,902,270	-				-1.2
1,902,271	+				+0.4
1,902,274	-				+1.6
1,902,275	+				-0.5
1,902,276	-				-0.2
1,902,289	-				-1.2
1,902,298	+				-0.6
1,902,298	+				+0.1
1,902,298	+				-1.5
1,902,299	-				+0.4
1,902,367	+				+0.4
1,902,367	+				-0.1
1,902,368	-				-0.2
1,902,368	-				+0.4
1,902,368	-				-0.6
1,902,370	-				+0.4
1,902,385	+				+0.2
1,902,386	-				+0.6
1,902,432	+				-0.3
1,902,432	+				-0.7
1,902,452	+				+0.4
1,902,453	-				+0.1
1,902,453	-				-1.9
1,902,464	+				+0.1
1,902,465	-				+0.2
1,902,465	-				-0.4
1,902,470	+				-0.6
1,902,510	-				-1.9
1,902,542	+				+0.6
1,902,608	-		DDA3937_RS22130	0.24	+1.1
1,902,608	-		DDA3937_RS22130	0.24	+1.2
1,902,608	-		DDA3937_RS22130	0.24	+0.4
1,902,608	-		DDA3937_RS22130	0.24	+0.2
1,902,913	+		DDA3937_RS08400	0.27	-1.2
1,902,913	+		DDA3937_RS08400	0.27	-0.8
1,902,913	+		DDA3937_RS08400	0.27	-1.9
1,903,023	+		DDA3937_RS08400	0.54	-1.2