Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08170

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS08165 and DDA3937_RS08170 are separated by 41 nucleotidesDDA3937_RS08170 and DDA3937_RS08175 are separated by 15 nucleotidesDDA3937_RS08175 and DDA3937_RS08180 overlap by 4 nucleotides DDA3937_RS08165: DDA3937_RS08165 - MFS transporter, at 1,849,110 to 1,850,441 _RS08165 DDA3937_RS08170: DDA3937_RS08170 - glucose 1-dehydrogenase, at 1,850,483 to 1,851,232 _RS08170 DDA3937_RS08175: DDA3937_RS08175 - transketolase, at 1,851,248 to 1,852,096 _RS08175 DDA3937_RS08180: DDA3937_RS08180 - transketolase family protein, at 1,852,093 to 1,853,094 _RS08180 Position (kb) 1850 1851 1852Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1849.514 kb on + strand, within DDA3937_RS08165at 1849.515 kb on - strand, within DDA3937_RS08165at 1849.558 kb on - strand, within DDA3937_RS08165at 1849.558 kb on - strand, within DDA3937_RS08165at 1849.558 kb on - strand, within DDA3937_RS08165at 1849.584 kb on - strand, within DDA3937_RS08165at 1849.584 kb on - strand, within DDA3937_RS08165at 1849.591 kb on + strand, within DDA3937_RS08165at 1849.678 kb on + strand, within DDA3937_RS08165at 1849.679 kb on - strand, within DDA3937_RS08165at 1849.686 kb on + strand, within DDA3937_RS08165at 1849.697 kb on + strand, within DDA3937_RS08165at 1849.746 kb on + strand, within DDA3937_RS08165at 1849.748 kb on + strand, within DDA3937_RS08165at 1849.748 kb on + strand, within DDA3937_RS08165at 1849.749 kb on - strand, within DDA3937_RS08165at 1849.749 kb on - strand, within DDA3937_RS08165at 1849.764 kb on - strand, within DDA3937_RS08165at 1849.771 kb on + strand, within DDA3937_RS08165at 1849.771 kb on + strand, within DDA3937_RS08165at 1849.805 kb on + strand, within DDA3937_RS08165at 1849.805 kb on + strand, within DDA3937_RS08165at 1849.806 kb on - strand, within DDA3937_RS08165at 1849.812 kb on - strand, within DDA3937_RS08165at 1849.812 kb on - strand, within DDA3937_RS08165at 1849.829 kb on - strand, within DDA3937_RS08165at 1849.829 kb on - strand, within DDA3937_RS08165at 1849.889 kb on + strand, within DDA3937_RS08165at 1849.890 kb on - strand, within DDA3937_RS08165at 1849.911 kb on + strand, within DDA3937_RS08165at 1849.911 kb on + strand, within DDA3937_RS08165at 1849.912 kb on - strand, within DDA3937_RS08165at 1849.942 kb on + strand, within DDA3937_RS08165at 1849.958 kb on + strand, within DDA3937_RS08165at 1849.958 kb on + strand, within DDA3937_RS08165at 1849.958 kb on + strand, within DDA3937_RS08165at 1849.958 kb on + strand, within DDA3937_RS08165at 1849.959 kb on - strand, within DDA3937_RS08165at 1849.959 kb on - strand, within DDA3937_RS08165at 1849.962 kb on + strand, within DDA3937_RS08165at 1849.962 kb on + strand, within DDA3937_RS08165at 1849.963 kb on - strand, within DDA3937_RS08165at 1849.986 kb on - strand, within DDA3937_RS08165at 1849.992 kb on - strandat 1849.998 kb on - strand, within DDA3937_RS08165at 1850.058 kb on + strand, within DDA3937_RS08165at 1850.059 kb on - strand, within DDA3937_RS08165at 1850.137 kb on + strand, within DDA3937_RS08165at 1850.147 kb on + strand, within DDA3937_RS08165at 1850.148 kb on - strand, within DDA3937_RS08165at 1850.148 kb on - strand, within DDA3937_RS08165at 1850.148 kb on - strand, within DDA3937_RS08165at 1850.162 kb on + strand, within DDA3937_RS08165at 1850.185 kb on + strand, within DDA3937_RS08165at 1850.325 kb on - strandat 1850.363 kb on + strandat 1850.364 kb on - strandat 1850.509 kb on + strandat 1850.509 kb on + strandat 1850.599 kb on - strand, within DDA3937_RS08170at 1850.615 kb on - strand, within DDA3937_RS08170at 1850.743 kb on + strand, within DDA3937_RS08170at 1850.795 kb on + strand, within DDA3937_RS08170at 1850.796 kb on - strand, within DDA3937_RS08170at 1850.805 kb on + strand, within DDA3937_RS08170at 1850.851 kb on + strand, within DDA3937_RS08170at 1850.946 kb on - strand, within DDA3937_RS08170at 1850.947 kb on + strand, within DDA3937_RS08170at 1850.948 kb on - strand, within DDA3937_RS08170at 1850.948 kb on - strand, within DDA3937_RS08170at 1851.011 kb on - strand, within DDA3937_RS08170at 1851.094 kb on + strand, within DDA3937_RS08170at 1851.095 kb on - strand, within DDA3937_RS08170at 1851.182 kb on + strandat 1851.182 kb on + strandat 1851.196 kb on + strandat 1851.197 kb on - strandat 1851.197 kb on - strandat 1851.222 kb on + strandat 1851.222 kb on + strandat 1851.230 kb on + strandat 1851.231 kb on - strandat 1851.236 kb on - strandat 1851.236 kb on - strandat 1851.247 kb on + strandat 1851.247 kb on + strandat 1851.248 kb on - strandat 1851.248 kb on - strandat 1851.248 kb on - strandat 1851.248 kb on - strandat 1851.248 kb on - strandat 1851.292 kb on + strandat 1851.293 kb on - strandat 1851.338 kb on + strand, within DDA3937_RS08175at 1851.338 kb on + strand, within DDA3937_RS08175at 1851.338 kb on + strand, within DDA3937_RS08175at 1851.339 kb on - strand, within DDA3937_RS08175at 1851.339 kb on - strand, within DDA3937_RS08175at 1851.339 kb on - strand, within DDA3937_RS08175at 1851.340 kb on + strand, within DDA3937_RS08175at 1851.340 kb on + strand, within DDA3937_RS08175at 1851.340 kb on + strand, within DDA3937_RS08175at 1851.340 kb on + strand, within DDA3937_RS08175at 1851.340 kb on + strand, within DDA3937_RS08175at 1851.341 kb on - strand, within DDA3937_RS08175at 1851.341 kb on - strand, within DDA3937_RS08175at 1851.341 kb on - strand, within DDA3937_RS08175at 1851.341 kb on - strand, within DDA3937_RS08175at 1851.341 kb on - strand, within DDA3937_RS08175at 1851.461 kb on + strand, within DDA3937_RS08175at 1851.461 kb on + strandat 1851.461 kb on + strand, within DDA3937_RS08175at 1851.462 kb on - strand, within DDA3937_RS08175at 1851.462 kb on - strand, within DDA3937_RS08175at 1851.473 kb on + strand, within DDA3937_RS08175at 1851.473 kb on + strand, within DDA3937_RS08175at 1851.473 kb on + strand, within DDA3937_RS08175at 1851.474 kb on - strand, within DDA3937_RS08175at 1851.476 kb on + strand, within DDA3937_RS08175at 1851.476 kb on + strand, within DDA3937_RS08175at 1851.476 kb on + strand, within DDA3937_RS08175at 1851.477 kb on - strand, within DDA3937_RS08175at 1851.477 kb on - strand, within DDA3937_RS08175at 1851.486 kb on + strand, within DDA3937_RS08175at 1851.487 kb on - strand, within DDA3937_RS08175at 1851.487 kb on - strand, within DDA3937_RS08175at 1851.503 kb on - strand, within DDA3937_RS08175at 1851.503 kb on - strand, within DDA3937_RS08175at 1851.527 kb on + strand, within DDA3937_RS08175at 1851.528 kb on - strand, within DDA3937_RS08175at 1851.528 kb on - strand, within DDA3937_RS08175at 1851.541 kb on + strand, within DDA3937_RS08175at 1851.572 kb on + strand, within DDA3937_RS08175at 1851.572 kb on + strand, within DDA3937_RS08175at 1851.572 kb on + strand, within DDA3937_RS08175at 1851.573 kb on - strand, within DDA3937_RS08175at 1851.573 kb on - strand, within DDA3937_RS08175at 1851.606 kb on + strand, within DDA3937_RS08175at 1851.619 kb on + strand, within DDA3937_RS08175at 1851.620 kb on - strand, within DDA3937_RS08175at 1851.623 kb on - strand, within DDA3937_RS08175at 1851.664 kb on + strand, within DDA3937_RS08175at 1851.664 kb on + strandat 1851.665 kb on - strand, within DDA3937_RS08175at 1851.841 kb on + strand, within DDA3937_RS08175at 1851.841 kb on + strand, within DDA3937_RS08175at 1851.841 kb on + strand, within DDA3937_RS08175at 1851.841 kb on + strand, within DDA3937_RS08175at 1851.842 kb on - strand, within DDA3937_RS08175at 1851.842 kb on - strand, within DDA3937_RS08175at 1851.842 kb on - strand, within DDA3937_RS08175at 1851.863 kb on + strand, within DDA3937_RS08175at 1851.864 kb on - strand, within DDA3937_RS08175at 1851.864 kb on - strand, within DDA3937_RS08175at 1851.864 kb on - strand, within DDA3937_RS08175at 1851.864 kb on - strand, within DDA3937_RS08175at 1852.018 kb on + strandat 1852.087 kb on - strandat 1852.087 kb on - strandat 1852.087 kb on - strandat 1852.087 kb on - strandat 1852.113 kb on + strandat 1852.212 kb on + strand, within DDA3937_RS08180

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,849,514 + DDA3937_RS08165 0.30 -0.2
1,849,515 - DDA3937_RS08165 0.30 +0.3
1,849,558 - DDA3937_RS08165 0.34 -0.3
1,849,558 - DDA3937_RS08165 0.34 -0.0
1,849,558 - DDA3937_RS08165 0.34 -1.0
1,849,584 - DDA3937_RS08165 0.36 +0.7
1,849,584 - DDA3937_RS08165 0.36 -1.0
1,849,591 + DDA3937_RS08165 0.36 +0.2
1,849,678 + DDA3937_RS08165 0.43 +0.1
1,849,679 - DDA3937_RS08165 0.43 +0.4
1,849,686 + DDA3937_RS08165 0.43 -0.2
1,849,697 + DDA3937_RS08165 0.44 +1.0
1,849,746 + DDA3937_RS08165 0.48 -1.6
1,849,748 + DDA3937_RS08165 0.48 -0.1
1,849,748 + DDA3937_RS08165 0.48 -1.0
1,849,749 - DDA3937_RS08165 0.48 -1.2
1,849,749 - DDA3937_RS08165 0.48 +0.2
1,849,764 - DDA3937_RS08165 0.49 -0.2
1,849,771 + DDA3937_RS08165 0.50 -0.2
1,849,771 + DDA3937_RS08165 0.50 -2.8
1,849,805 + DDA3937_RS08165 0.52 -2.4
1,849,805 + DDA3937_RS08165 0.52 -0.6
1,849,806 - DDA3937_RS08165 0.52 +0.7
1,849,812 - DDA3937_RS08165 0.53 +0.1
1,849,812 - DDA3937_RS08165 0.53 -0.3
1,849,829 - DDA3937_RS08165 0.54 +0.8
1,849,829 - DDA3937_RS08165 0.54 +0.1
1,849,889 + DDA3937_RS08165 0.58 +0.0
1,849,890 - DDA3937_RS08165 0.59 -0.5
1,849,911 + DDA3937_RS08165 0.60 -0.2
1,849,911 + DDA3937_RS08165 0.60 +0.0
1,849,912 - DDA3937_RS08165 0.60 +0.1
1,849,942 + DDA3937_RS08165 0.62 -0.9
1,849,958 + DDA3937_RS08165 0.64 +1.2
1,849,958 + DDA3937_RS08165 0.64 +0.1
1,849,958 + DDA3937_RS08165 0.64 +0.7
1,849,958 + DDA3937_RS08165 0.64 -0.1
1,849,959 - DDA3937_RS08165 0.64 -0.0
1,849,959 - DDA3937_RS08165 0.64 -0.8
1,849,962 + DDA3937_RS08165 0.64 -1.2
1,849,962 + DDA3937_RS08165 0.64 +0.6
1,849,963 - DDA3937_RS08165 0.64 -0.7
1,849,986 - DDA3937_RS08165 0.66 -0.5
1,849,992 - -0.6
1,849,998 - DDA3937_RS08165 0.67 -0.2
1,850,058 + DDA3937_RS08165 0.71 +0.8
1,850,059 - DDA3937_RS08165 0.71 -2.6
1,850,137 + DDA3937_RS08165 0.77 +0.3
1,850,147 + DDA3937_RS08165 0.78 +0.3
1,850,148 - DDA3937_RS08165 0.78 +1.0
1,850,148 - DDA3937_RS08165 0.78 -0.2
1,850,148 - DDA3937_RS08165 0.78 +0.9
1,850,162 + DDA3937_RS08165 0.79 +0.2
1,850,185 + DDA3937_RS08165 0.81 -1.0
1,850,325 - -0.5
1,850,363 + +0.2
1,850,364 - -1.0
1,850,509 + +0.7
1,850,509 + -0.9
1,850,599 - DDA3937_RS08170 0.15 -0.5
1,850,615 - DDA3937_RS08170 0.18 -0.5
1,850,743 + DDA3937_RS08170 0.35 -0.6
1,850,795 + DDA3937_RS08170 0.42 -0.7
1,850,796 - DDA3937_RS08170 0.42 -1.2
1,850,805 + DDA3937_RS08170 0.43 +0.4
1,850,851 + DDA3937_RS08170 0.49 -0.9
1,850,946 - DDA3937_RS08170 0.62 -0.6
1,850,947 + DDA3937_RS08170 0.62 -0.8
1,850,948 - DDA3937_RS08170 0.62 -0.5
1,850,948 - DDA3937_RS08170 0.62 -0.2
1,851,011 - DDA3937_RS08170 0.70 -1.0
1,851,094 + DDA3937_RS08170 0.81 -0.4
1,851,095 - DDA3937_RS08170 0.82 -0.6
1,851,182 + +0.1
1,851,182 + -1.8
1,851,196 + -0.1
1,851,197 - -1.5
1,851,197 - -0.6
1,851,222 + -0.4
1,851,222 + -0.6
1,851,230 + -0.1
1,851,231 - +0.7
1,851,236 - +1.2
1,851,236 - -0.9
1,851,247 + +1.0
1,851,247 + -3.2
1,851,248 - -0.2
1,851,248 - +0.5
1,851,248 - -0.1
1,851,248 - +1.0
1,851,248 - +0.1
1,851,292 + +3.6
1,851,293 - -1.3
1,851,338 + DDA3937_RS08175 0.11 +0.3
1,851,338 + DDA3937_RS08175 0.11 -0.6
1,851,338 + DDA3937_RS08175 0.11 -0.6
1,851,339 - DDA3937_RS08175 0.11 -0.8
1,851,339 - DDA3937_RS08175 0.11 -1.5
1,851,339 - DDA3937_RS08175 0.11 -1.5
1,851,340 + DDA3937_RS08175 0.11 -0.7
1,851,340 + DDA3937_RS08175 0.11 +1.6
1,851,340 + DDA3937_RS08175 0.11 -0.0
1,851,340 + DDA3937_RS08175 0.11 -0.5
1,851,340 + DDA3937_RS08175 0.11 -1.4
1,851,341 - DDA3937_RS08175 0.11 +0.1
1,851,341 - DDA3937_RS08175 0.11 -0.8
1,851,341 - DDA3937_RS08175 0.11 -2.1
1,851,341 - DDA3937_RS08175 0.11 -0.6
1,851,341 - DDA3937_RS08175 0.11 +0.7
1,851,461 + DDA3937_RS08175 0.25 +0.6
1,851,461 + -1.2
1,851,461 + DDA3937_RS08175 0.25 +0.7
1,851,462 - DDA3937_RS08175 0.25 -0.0
1,851,462 - DDA3937_RS08175 0.25 -1.2
1,851,473 + DDA3937_RS08175 0.27 -0.6
1,851,473 + DDA3937_RS08175 0.27 -0.4
1,851,473 + DDA3937_RS08175 0.27 -1.3
1,851,474 - DDA3937_RS08175 0.27 -1.4
1,851,476 + DDA3937_RS08175 0.27 -0.8
1,851,476 + DDA3937_RS08175 0.27 +1.7
1,851,476 + DDA3937_RS08175 0.27 -1.4
1,851,477 - DDA3937_RS08175 0.27 -1.7
1,851,477 - DDA3937_RS08175 0.27 -0.3
1,851,486 + DDA3937_RS08175 0.28 +1.7
1,851,487 - DDA3937_RS08175 0.28 -0.3
1,851,487 - DDA3937_RS08175 0.28 +0.4
1,851,503 - DDA3937_RS08175 0.30 +1.7
1,851,503 - DDA3937_RS08175 0.30 -0.6
1,851,527 + DDA3937_RS08175 0.33 +0.4
1,851,528 - DDA3937_RS08175 0.33 -1.2
1,851,528 - DDA3937_RS08175 0.33 -0.8
1,851,541 + DDA3937_RS08175 0.35 +0.6
1,851,572 + DDA3937_RS08175 0.38 -0.5
1,851,572 + DDA3937_RS08175 0.38 -0.1
1,851,572 + DDA3937_RS08175 0.38 -0.3
1,851,573 - DDA3937_RS08175 0.38 -1.5
1,851,573 - DDA3937_RS08175 0.38 -0.3
1,851,606 + DDA3937_RS08175 0.42 -0.1
1,851,619 + DDA3937_RS08175 0.44 +0.9
1,851,620 - DDA3937_RS08175 0.44 +0.2
1,851,623 - DDA3937_RS08175 0.44 +0.2
1,851,664 + DDA3937_RS08175 0.49 +0.4
1,851,664 + -0.3
1,851,665 - DDA3937_RS08175 0.49 -0.3
1,851,841 + DDA3937_RS08175 0.70 +1.1
1,851,841 + DDA3937_RS08175 0.70 -2.9
1,851,841 + DDA3937_RS08175 0.70 +0.4
1,851,841 + DDA3937_RS08175 0.70 +0.0
1,851,842 - DDA3937_RS08175 0.70 +0.4
1,851,842 - DDA3937_RS08175 0.70 -0.7
1,851,842 - DDA3937_RS08175 0.70 -1.9
1,851,863 + DDA3937_RS08175 0.72 -0.2
1,851,864 - DDA3937_RS08175 0.73 -0.9
1,851,864 - DDA3937_RS08175 0.73 +0.6
1,851,864 - DDA3937_RS08175 0.73 +1.4
1,851,864 - DDA3937_RS08175 0.73 -0.2
1,852,018 + -0.6
1,852,087 - -0.7
1,852,087 - -1.1
1,852,087 - +0.4
1,852,087 - -0.3
1,852,113 + +0.4
1,852,212 + DDA3937_RS08180 0.12 +2.1

Or see this region's nucleotide sequence