Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS07915 and DDA3937_RS07920 are separated by 12 nucleotides DDA3937_RS07920 and DDA3937_RS07925 are separated by 2 nucleotides DDA3937_RS07925 and DDA3937_RS07930 are separated by 13 nucleotides
DDA3937_RS07915: DDA3937_RS07915 - ABC transporter permease, at 1,793,297 to 1,794,883
_RS07915
DDA3937_RS07920: DDA3937_RS07920 - biopolymer transporter ExbD, at 1,794,896 to 1,795,297
_RS07920
DDA3937_RS07925: DDA3937_RS07925 - MotA/TolQ/ExbB proton channel family protein, at 1,795,300 to 1,795,998
_RS07925
DDA3937_RS07930: DDA3937_RS07930 - TonB family protein, at 1,796,012 to 1,796,869
_RS07930
Position (kb) 1794
1795
1796 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1794.008 kb on + strand, within DDA3937_RS07915 at 1794.188 kb on - strand, within DDA3937_RS07915 at 1794.249 kb on - strand, within DDA3937_RS07915 at 1794.306 kb on + strand, within DDA3937_RS07915 at 1794.339 kb on - strand, within DDA3937_RS07915 at 1794.367 kb on + strand, within DDA3937_RS07915 at 1794.381 kb on + strand, within DDA3937_RS07915 at 1794.418 kb on + strand, within DDA3937_RS07915 at 1794.554 kb on - strand, within DDA3937_RS07915 at 1794.750 kb on + strand at 1794.750 kb on + strand at 1794.751 kb on - strand at 1794.902 kb on - strand at 1794.972 kb on + strand, within DDA3937_RS07920 at 1794.973 kb on - strand, within DDA3937_RS07920 at 1794.973 kb on - strand, within DDA3937_RS07920 at 1795.301 kb on + strand at 1795.301 kb on + strand at 1795.301 kb on + strand at 1795.301 kb on + strand at 1795.301 kb on + strand at 1795.302 kb on - strand at 1795.302 kb on - strand at 1795.302 kb on - strand at 1795.302 kb on - strand at 1795.302 kb on - strand at 1795.302 kb on - strand at 1795.302 kb on - strand at 1795.302 kb on - strand at 1795.388 kb on + strand, within DDA3937_RS07925 at 1795.388 kb on + strand, within DDA3937_RS07925 at 1795.389 kb on - strand, within DDA3937_RS07925 at 1795.389 kb on - strand, within DDA3937_RS07925 at 1795.389 kb on - strand, within DDA3937_RS07925 at 1795.389 kb on - strand, within DDA3937_RS07925 at 1795.392 kb on + strand, within DDA3937_RS07925 at 1795.392 kb on + strand, within DDA3937_RS07925 at 1795.393 kb on - strand, within DDA3937_RS07925 at 1795.393 kb on - strand, within DDA3937_RS07925 at 1795.454 kb on - strand, within DDA3937_RS07925 at 1795.735 kb on - strand, within DDA3937_RS07925 at 1795.890 kb on - strand, within DDA3937_RS07925 at 1795.890 kb on - strand, within DDA3937_RS07925 at 1795.890 kb on - strand, within DDA3937_RS07925 at 1795.983 kb on + strand at 1795.983 kb on + strand at 1795.983 kb on + strand at 1795.984 kb on - strand at 1795.984 kb on - strand at 1795.984 kb on - strand at 1795.998 kb on + strand at 1795.998 kb on + strand at 1795.998 kb on + strand at 1795.999 kb on - strand at 1795.999 kb on - strand at 1796.002 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,794,008 + DDA3937_RS07915 0.45 +0.2 1,794,188 - DDA3937_RS07915 0.56 -0.2 1,794,249 - DDA3937_RS07915 0.60 +0.3 1,794,306 + DDA3937_RS07915 0.64 +0.7 1,794,339 - DDA3937_RS07915 0.66 +0.2 1,794,367 + DDA3937_RS07915 0.67 -1.0 1,794,381 + DDA3937_RS07915 0.68 -1.1 1,794,418 + DDA3937_RS07915 0.71 -1.9 1,794,554 - DDA3937_RS07915 0.79 -1.4 1,794,750 + -3.0 1,794,750 + -0.9 1,794,751 - -0.4 1,794,902 - -0.3 1,794,972 + DDA3937_RS07920 0.19 +1.3 1,794,973 - DDA3937_RS07920 0.19 +0.2 1,794,973 - DDA3937_RS07920 0.19 -0.2 1,795,301 + -0.5 1,795,301 + +0.6 1,795,301 + -0.7 1,795,301 + +0.8 1,795,301 + -0.4 1,795,302 - +0.3 1,795,302 - +0.6 1,795,302 - -1.2 1,795,302 - -1.0 1,795,302 - +1.6 1,795,302 - +0.3 1,795,302 - -0.8 1,795,302 - -0.2 1,795,388 + DDA3937_RS07925 0.13 +0.4 1,795,388 + DDA3937_RS07925 0.13 -0.0 1,795,389 - DDA3937_RS07925 0.13 -0.3 1,795,389 - DDA3937_RS07925 0.13 +2.4 1,795,389 - DDA3937_RS07925 0.13 +1.4 1,795,389 - DDA3937_RS07925 0.13 +1.1 1,795,392 + DDA3937_RS07925 0.13 +0.2 1,795,392 + DDA3937_RS07925 0.13 -0.1 1,795,393 - DDA3937_RS07925 0.13 +0.6 1,795,393 - DDA3937_RS07925 0.13 -0.1 1,795,454 - DDA3937_RS07925 0.22 -0.4 1,795,735 - DDA3937_RS07925 0.62 -1.2 1,795,890 - DDA3937_RS07925 0.84 -1.0 1,795,890 - DDA3937_RS07925 0.84 -0.3 1,795,890 - DDA3937_RS07925 0.84 -1.2 1,795,983 + -0.5 1,795,983 + -1.3 1,795,983 + -2.8 1,795,984 - -1.8 1,795,984 - +0.1 1,795,984 - +0.3 1,795,998 + -1.4 1,795,998 + -0.2 1,795,998 + -1.6 1,795,999 - -0.6 1,795,999 - -1.2 1,796,002 - +2.0
Or see this region's nucleotide sequence