Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07875

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS07870 and DDA3937_RS07875 are separated by 119 nucleotidesDDA3937_RS07875 and DDA3937_RS07880 are separated by 53 nucleotides DDA3937_RS07870: DDA3937_RS07870 - substrate-binding domain-containing protein, at 1,781,030 to 1,782,076 _RS07870 DDA3937_RS07875: DDA3937_RS07875 - alpha-galactosidase, at 1,782,196 to 1,784,325 _RS07875 DDA3937_RS07880: DDA3937_RS07880 - MFS transporter, at 1,784,379 to 1,785,659 _RS07880 Position (kb) 1782 1783 1784 1785Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1781.201 kb on - strand, within DDA3937_RS07870at 1781.251 kb on + strand, within DDA3937_RS07870at 1781.251 kb on + strand, within DDA3937_RS07870at 1781.252 kb on - strand, within DDA3937_RS07870at 1781.252 kb on - strand, within DDA3937_RS07870at 1781.252 kb on - strand, within DDA3937_RS07870at 1781.254 kb on + strand, within DDA3937_RS07870at 1781.254 kb on + strand, within DDA3937_RS07870at 1781.254 kb on + strand, within DDA3937_RS07870at 1781.255 kb on - strand, within DDA3937_RS07870at 1781.255 kb on - strand, within DDA3937_RS07870at 1781.255 kb on - strand, within DDA3937_RS07870at 1781.255 kb on - strand, within DDA3937_RS07870at 1781.433 kb on - strand, within DDA3937_RS07870at 1781.433 kb on - strand, within DDA3937_RS07870at 1781.493 kb on - strandat 1781.685 kb on + strand, within DDA3937_RS07870at 1781.686 kb on - strand, within DDA3937_RS07870at 1781.773 kb on + strand, within DDA3937_RS07870at 1781.852 kb on + strand, within DDA3937_RS07870at 1782.163 kb on + strandat 1782.163 kb on + strandat 1782.163 kb on + strandat 1782.164 kb on - strandat 1782.269 kb on + strandat 1782.269 kb on + strandat 1782.270 kb on - strandat 1782.545 kb on + strand, within DDA3937_RS07875at 1782.923 kb on - strand, within DDA3937_RS07875at 1782.923 kb on - strand, within DDA3937_RS07875at 1782.979 kb on + strand, within DDA3937_RS07875at 1783.092 kb on + strand, within DDA3937_RS07875at 1783.093 kb on - strand, within DDA3937_RS07875at 1783.108 kb on + strand, within DDA3937_RS07875at 1783.109 kb on - strand, within DDA3937_RS07875at 1783.109 kb on - strand, within DDA3937_RS07875at 1783.109 kb on - strand, within DDA3937_RS07875at 1783.109 kb on - strand, within DDA3937_RS07875at 1783.113 kb on + strand, within DDA3937_RS07875at 1783.113 kb on + strand, within DDA3937_RS07875at 1783.113 kb on + strand, within DDA3937_RS07875at 1783.113 kb on + strand, within DDA3937_RS07875at 1783.114 kb on - strand, within DDA3937_RS07875at 1783.129 kb on + strand, within DDA3937_RS07875at 1783.130 kb on - strand, within DDA3937_RS07875at 1783.130 kb on - strand, within DDA3937_RS07875at 1783.130 kb on - strand, within DDA3937_RS07875at 1783.180 kb on - strand, within DDA3937_RS07875at 1783.180 kb on - strand, within DDA3937_RS07875at 1783.180 kb on - strand, within DDA3937_RS07875at 1783.240 kb on + strand, within DDA3937_RS07875at 1783.241 kb on - strand, within DDA3937_RS07875at 1783.241 kb on - strand, within DDA3937_RS07875at 1783.241 kb on - strand, within DDA3937_RS07875at 1783.241 kb on - strand, within DDA3937_RS07875at 1783.259 kb on - strand, within DDA3937_RS07875at 1783.284 kb on - strand, within DDA3937_RS07875at 1783.284 kb on - strand, within DDA3937_RS07875at 1783.325 kb on + strand, within DDA3937_RS07875at 1783.360 kb on + strand, within DDA3937_RS07875at 1783.426 kb on + strand, within DDA3937_RS07875at 1783.426 kb on + strand, within DDA3937_RS07875at 1783.427 kb on - strandat 1783.463 kb on - strand, within DDA3937_RS07875at 1783.466 kb on + strand, within DDA3937_RS07875at 1783.467 kb on - strand, within DDA3937_RS07875at 1783.467 kb on - strand, within DDA3937_RS07875at 1783.510 kb on + strand, within DDA3937_RS07875at 1783.510 kb on + strand, within DDA3937_RS07875at 1783.511 kb on - strand, within DDA3937_RS07875at 1783.511 kb on - strand, within DDA3937_RS07875at 1783.511 kb on - strand, within DDA3937_RS07875at 1783.594 kb on + strand, within DDA3937_RS07875at 1783.675 kb on + strand, within DDA3937_RS07875at 1783.676 kb on - strand, within DDA3937_RS07875at 1783.676 kb on - strand, within DDA3937_RS07875at 1783.762 kb on + strand, within DDA3937_RS07875at 1783.762 kb on + strandat 1783.763 kb on - strand, within DDA3937_RS07875at 1783.763 kb on - strand, within DDA3937_RS07875at 1783.763 kb on - strand, within DDA3937_RS07875at 1783.836 kb on + strand, within DDA3937_RS07875at 1783.837 kb on - strand, within DDA3937_RS07875at 1783.837 kb on - strand, within DDA3937_RS07875at 1783.873 kb on - strand, within DDA3937_RS07875at 1783.933 kb on + strand, within DDA3937_RS07875at 1783.933 kb on + strand, within DDA3937_RS07875at 1783.933 kb on + strand, within DDA3937_RS07875at 1783.933 kb on + strand, within DDA3937_RS07875at 1783.934 kb on - strand, within DDA3937_RS07875at 1783.934 kb on - strand, within DDA3937_RS07875at 1784.236 kb on + strandat 1784.237 kb on - strandat 1784.237 kb on - strandat 1784.313 kb on - strandat 1784.323 kb on + strandat 1784.323 kb on + strandat 1784.324 kb on - strandat 1784.324 kb on - strandat 1784.324 kb on - strandat 1784.324 kb on - strandat 1784.326 kb on + strandat 1784.326 kb on + strandat 1784.327 kb on - strandat 1784.327 kb on - strandat 1784.373 kb on - strandat 1784.375 kb on + strandat 1784.375 kb on + strandat 1784.375 kb on + strandat 1784.375 kb on + strandat 1784.375 kb on + strandat 1784.376 kb on - strandat 1784.376 kb on - strandat 1784.376 kb on - strandat 1784.376 kb on - strandat 1784.376 kb on - strandat 1784.376 kb on - strandat 1784.379 kb on - strandat 1784.379 kb on - strandat 1784.408 kb on + strandat 1784.408 kb on + strandat 1784.408 kb on + strandat 1784.408 kb on + strandat 1784.408 kb on + strandat 1784.408 kb on + strandat 1784.411 kb on + strandat 1784.412 kb on - strandat 1784.412 kb on - strandat 1784.412 kb on - strandat 1784.412 kb on - strandat 1784.421 kb on + strandat 1784.463 kb on + strandat 1784.561 kb on + strand, within DDA3937_RS07880at 1784.562 kb on - strand, within DDA3937_RS07880at 1784.685 kb on + strand, within DDA3937_RS07880at 1784.685 kb on + strand, within DDA3937_RS07880at 1784.686 kb on - strand, within DDA3937_RS07880at 1784.686 kb on - strand, within DDA3937_RS07880at 1784.745 kb on + strandat 1784.745 kb on + strand, within DDA3937_RS07880at 1784.745 kb on + strandat 1784.745 kb on + strand, within DDA3937_RS07880at 1784.746 kb on - strand, within DDA3937_RS07880at 1784.746 kb on - strand, within DDA3937_RS07880at 1784.746 kb on - strand, within DDA3937_RS07880at 1784.746 kb on - strand, within DDA3937_RS07880at 1784.746 kb on - strand, within DDA3937_RS07880at 1784.747 kb on + strandat 1784.790 kb on + strand, within DDA3937_RS07880at 1784.791 kb on - strand, within DDA3937_RS07880at 1784.791 kb on - strand, within DDA3937_RS07880at 1784.791 kb on - strand, within DDA3937_RS07880at 1784.791 kb on - strand, within DDA3937_RS07880at 1784.793 kb on - strand, within DDA3937_RS07880at 1784.827 kb on - strand, within DDA3937_RS07880at 1785.090 kb on + strand, within DDA3937_RS07880at 1785.090 kb on + strand, within DDA3937_RS07880at 1785.090 kb on + strand, within DDA3937_RS07880at 1785.090 kb on + strand, within DDA3937_RS07880at 1785.090 kb on + strand, within DDA3937_RS07880at 1785.090 kb on + strand, within DDA3937_RS07880at 1785.090 kb on + strand, within DDA3937_RS07880at 1785.091 kb on - strand, within DDA3937_RS07880at 1785.091 kb on - strand, within DDA3937_RS07880at 1785.091 kb on - strand, within DDA3937_RS07880at 1785.091 kb on - strand, within DDA3937_RS07880at 1785.091 kb on - strand, within DDA3937_RS07880at 1785.114 kb on + strand, within DDA3937_RS07880at 1785.115 kb on - strand, within DDA3937_RS07880at 1785.115 kb on - strand, within DDA3937_RS07880at 1785.115 kb on - strand, within DDA3937_RS07880at 1785.257 kb on + strand, within DDA3937_RS07880at 1785.283 kb on + strand, within DDA3937_RS07880

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,781,201 - DDA3937_RS07870 0.16 -0.5
1,781,251 + DDA3937_RS07870 0.21 -0.0
1,781,251 + DDA3937_RS07870 0.21 +0.4
1,781,252 - DDA3937_RS07870 0.21 -0.0
1,781,252 - DDA3937_RS07870 0.21 -0.1
1,781,252 - DDA3937_RS07870 0.21 -0.8
1,781,254 + DDA3937_RS07870 0.21 -1.0
1,781,254 + DDA3937_RS07870 0.21 +0.0
1,781,254 + DDA3937_RS07870 0.21 +1.6
1,781,255 - DDA3937_RS07870 0.21 -0.4
1,781,255 - DDA3937_RS07870 0.21 -1.3
1,781,255 - DDA3937_RS07870 0.21 -0.0
1,781,255 - DDA3937_RS07870 0.21 +0.1
1,781,433 - DDA3937_RS07870 0.38 -0.5
1,781,433 - DDA3937_RS07870 0.38 +0.4
1,781,493 - +1.0
1,781,685 + DDA3937_RS07870 0.63 +0.4
1,781,686 - DDA3937_RS07870 0.63 -0.6
1,781,773 + DDA3937_RS07870 0.71 +0.2
1,781,852 + DDA3937_RS07870 0.79 -0.6
1,782,163 + +0.4
1,782,163 + -0.4
1,782,163 + -0.0
1,782,164 - +0.9
1,782,269 + +2.2
1,782,269 + -1.4
1,782,270 - +0.4
1,782,545 + DDA3937_RS07875 0.16 -1.1
1,782,923 - DDA3937_RS07875 0.34 -1.6
1,782,923 - DDA3937_RS07875 0.34 -0.1
1,782,979 + DDA3937_RS07875 0.37 -1.2
1,783,092 + DDA3937_RS07875 0.42 -2.0
1,783,093 - DDA3937_RS07875 0.42 -0.4
1,783,108 + DDA3937_RS07875 0.43 -0.5
1,783,109 - DDA3937_RS07875 0.43 -1.0
1,783,109 - DDA3937_RS07875 0.43 +0.4
1,783,109 - DDA3937_RS07875 0.43 -0.0
1,783,109 - DDA3937_RS07875 0.43 -0.9
1,783,113 + DDA3937_RS07875 0.43 -0.2
1,783,113 + DDA3937_RS07875 0.43 -0.1
1,783,113 + DDA3937_RS07875 0.43 -0.1
1,783,113 + DDA3937_RS07875 0.43 -1.6
1,783,114 - DDA3937_RS07875 0.43 -0.6
1,783,129 + DDA3937_RS07875 0.44 -1.4
1,783,130 - DDA3937_RS07875 0.44 +0.4
1,783,130 - DDA3937_RS07875 0.44 -0.1
1,783,130 - DDA3937_RS07875 0.44 +0.5
1,783,180 - DDA3937_RS07875 0.46 -0.4
1,783,180 - DDA3937_RS07875 0.46 +0.1
1,783,180 - DDA3937_RS07875 0.46 -0.6
1,783,240 + DDA3937_RS07875 0.49 +0.1
1,783,241 - DDA3937_RS07875 0.49 -0.0
1,783,241 - DDA3937_RS07875 0.49 -1.3
1,783,241 - DDA3937_RS07875 0.49 -0.0
1,783,241 - DDA3937_RS07875 0.49 -0.2
1,783,259 - DDA3937_RS07875 0.50 -0.4
1,783,284 - DDA3937_RS07875 0.51 -0.3
1,783,284 - DDA3937_RS07875 0.51 -2.4
1,783,325 + DDA3937_RS07875 0.53 -0.6
1,783,360 + DDA3937_RS07875 0.55 -0.9
1,783,426 + DDA3937_RS07875 0.58 -0.0
1,783,426 + DDA3937_RS07875 0.58 -0.2
1,783,427 - -0.2
1,783,463 - DDA3937_RS07875 0.59 -0.3
1,783,466 + DDA3937_RS07875 0.60 -0.5
1,783,467 - DDA3937_RS07875 0.60 -0.9
1,783,467 - DDA3937_RS07875 0.60 +0.2
1,783,510 + DDA3937_RS07875 0.62 -0.0
1,783,510 + DDA3937_RS07875 0.62 -0.4
1,783,511 - DDA3937_RS07875 0.62 -0.5
1,783,511 - DDA3937_RS07875 0.62 -0.8
1,783,511 - DDA3937_RS07875 0.62 -0.2
1,783,594 + DDA3937_RS07875 0.66 -1.2
1,783,675 + DDA3937_RS07875 0.69 -0.9
1,783,676 - DDA3937_RS07875 0.69 -1.2
1,783,676 - DDA3937_RS07875 0.69 -0.3
1,783,762 + DDA3937_RS07875 0.74 -0.6
1,783,762 + -0.2
1,783,763 - DDA3937_RS07875 0.74 -0.3
1,783,763 - DDA3937_RS07875 0.74 +0.4
1,783,763 - DDA3937_RS07875 0.74 +0.5
1,783,836 + DDA3937_RS07875 0.77 -0.8
1,783,837 - DDA3937_RS07875 0.77 +1.0
1,783,837 - DDA3937_RS07875 0.77 +0.0
1,783,873 - DDA3937_RS07875 0.79 -1.3
1,783,933 + DDA3937_RS07875 0.82 +0.4
1,783,933 + DDA3937_RS07875 0.82 -0.9
1,783,933 + DDA3937_RS07875 0.82 +1.6
1,783,933 + DDA3937_RS07875 0.82 -0.7
1,783,934 - DDA3937_RS07875 0.82 -1.3
1,783,934 - DDA3937_RS07875 0.82 +0.4
1,784,236 + -0.1
1,784,237 - -0.0
1,784,237 - -0.9
1,784,313 - -1.8
1,784,323 + -0.3
1,784,323 + -0.4
1,784,324 - -1.7
1,784,324 - -2.9
1,784,324 - +0.9
1,784,324 - -1.0
1,784,326 + +0.4
1,784,326 + -2.6
1,784,327 - -0.5
1,784,327 - -0.3
1,784,373 - -1.8
1,784,375 + -1.0
1,784,375 + -0.9
1,784,375 + -0.0
1,784,375 + -0.1
1,784,375 + +0.4
1,784,376 - -2.3
1,784,376 - -1.2
1,784,376 - -0.4
1,784,376 - +1.0
1,784,376 - -1.1
1,784,376 - +0.2
1,784,379 - +0.1
1,784,379 - +0.1
1,784,408 + -0.2
1,784,408 + -1.0
1,784,408 + -0.8
1,784,408 + -0.3
1,784,408 + -1.0
1,784,408 + -1.6
1,784,411 + -0.4
1,784,412 - +0.1
1,784,412 - -1.6
1,784,412 - +0.9
1,784,412 - +0.1
1,784,421 + +1.0
1,784,463 + -0.4
1,784,561 + DDA3937_RS07880 0.14 -0.8
1,784,562 - DDA3937_RS07880 0.14 -1.7
1,784,685 + DDA3937_RS07880 0.24 -0.2
1,784,685 + DDA3937_RS07880 0.24 -1.2
1,784,686 - DDA3937_RS07880 0.24 -0.1
1,784,686 - DDA3937_RS07880 0.24 -0.1
1,784,745 + +1.0
1,784,745 + DDA3937_RS07880 0.29 -0.6
1,784,745 + +0.7
1,784,745 + DDA3937_RS07880 0.29 +0.3
1,784,746 - DDA3937_RS07880 0.29 -0.2
1,784,746 - DDA3937_RS07880 0.29 -0.6
1,784,746 - DDA3937_RS07880 0.29 -0.9
1,784,746 - DDA3937_RS07880 0.29 +1.4
1,784,746 - DDA3937_RS07880 0.29 +0.9
1,784,747 + +1.4
1,784,790 + DDA3937_RS07880 0.32 -0.2
1,784,791 - DDA3937_RS07880 0.32 +0.5
1,784,791 - DDA3937_RS07880 0.32 +1.1
1,784,791 - DDA3937_RS07880 0.32 +0.6
1,784,791 - DDA3937_RS07880 0.32 -0.5
1,784,793 - DDA3937_RS07880 0.32 -0.1
1,784,827 - DDA3937_RS07880 0.35 +0.2
1,785,090 + DDA3937_RS07880 0.56 +0.3
1,785,090 + DDA3937_RS07880 0.56 -1.2
1,785,090 + DDA3937_RS07880 0.56 -0.5
1,785,090 + DDA3937_RS07880 0.56 -1.3
1,785,090 + DDA3937_RS07880 0.56 -0.3
1,785,090 + DDA3937_RS07880 0.56 -0.2
1,785,090 + DDA3937_RS07880 0.56 -0.3
1,785,091 - DDA3937_RS07880 0.56 +0.4
1,785,091 - DDA3937_RS07880 0.56 -0.0
1,785,091 - DDA3937_RS07880 0.56 +1.1
1,785,091 - DDA3937_RS07880 0.56 -0.9
1,785,091 - DDA3937_RS07880 0.56 +0.1
1,785,114 + DDA3937_RS07880 0.57 -1.4
1,785,115 - DDA3937_RS07880 0.57 -2.2
1,785,115 - DDA3937_RS07880 0.57 -0.1
1,785,115 - DDA3937_RS07880 0.57 -0.4
1,785,257 + DDA3937_RS07880 0.69 -0.5
1,785,283 + DDA3937_RS07880 0.71 -0.6

Or see this region's nucleotide sequence