Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07750

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS07745 and DDA3937_RS07750 are separated by 351 nucleotidesDDA3937_RS07750 and DDA3937_RS07755 overlap by 4 nucleotides DDA3937_RS07745: DDA3937_RS07745 - AcsA protein, at 1,749,678 to 1,751,606 _RS07745 DDA3937_RS07750: DDA3937_RS07750 - iron-siderophore ABC transporter substrate-binding protein, at 1,751,958 to 1,752,875 _RS07750 DDA3937_RS07755: DDA3937_RS07755 - iron ABC transporter permease, at 1,752,872 to 1,753,894 _RS07755 Position (kb) 1751 1752 1753Strain fitness (log2 ratio) -2 -1 0 1at 1751.189 kb on + strand, within DDA3937_RS07745at 1751.235 kb on + strand, within DDA3937_RS07745at 1751.235 kb on + strand, within DDA3937_RS07745at 1751.236 kb on - strand, within DDA3937_RS07745at 1751.361 kb on + strand, within DDA3937_RS07745at 1751.361 kb on + strand, within DDA3937_RS07745at 1751.361 kb on + strand, within DDA3937_RS07745at 1751.417 kb on + strandat 1751.543 kb on + strandat 1751.544 kb on - strandat 1751.544 kb on - strandat 1751.594 kb on + strandat 1751.594 kb on + strandat 1751.604 kb on + strandat 1751.604 kb on + strandat 1751.634 kb on + strandat 1751.634 kb on + strandat 1751.634 kb on + strandat 1751.634 kb on + strandat 1751.635 kb on - strandat 1751.635 kb on - strandat 1751.913 kb on + strandat 1751.951 kb on + strandat 1751.951 kb on + strandat 1751.951 kb on + strandat 1751.967 kb on + strandat 1751.967 kb on + strandat 1751.968 kb on - strandat 1751.972 kb on - strandat 1751.972 kb on - strandat 1752.134 kb on - strand, within DDA3937_RS07750at 1752.162 kb on + strand, within DDA3937_RS07750at 1752.162 kb on + strand, within DDA3937_RS07750at 1752.635 kb on + strand, within DDA3937_RS07750at 1752.705 kb on + strand, within DDA3937_RS07750at 1752.742 kb on + strand, within DDA3937_RS07750at 1752.742 kb on + strand, within DDA3937_RS07750at 1752.743 kb on - strand, within DDA3937_RS07750at 1753.048 kb on + strand, within DDA3937_RS07755at 1753.339 kb on + strand, within DDA3937_RS07755

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,751,189 + DDA3937_RS07745 0.78 -1.0
1,751,235 + DDA3937_RS07745 0.81 -1.2
1,751,235 + DDA3937_RS07745 0.81 -0.4
1,751,236 - DDA3937_RS07745 0.81 -0.4
1,751,361 + DDA3937_RS07745 0.87 -1.1
1,751,361 + DDA3937_RS07745 0.87 -1.1
1,751,361 + DDA3937_RS07745 0.87 -0.0
1,751,417 + +0.0
1,751,543 + +0.2
1,751,544 - +1.2
1,751,544 - +0.2
1,751,594 + +1.1
1,751,594 + +1.4
1,751,604 + +0.5
1,751,604 + -0.6
1,751,634 + -0.0
1,751,634 + +0.6
1,751,634 + -0.4
1,751,634 + +0.4
1,751,635 - +0.2
1,751,635 - -1.6
1,751,913 + -1.2
1,751,951 + -0.8
1,751,951 + +0.4
1,751,951 + -0.0
1,751,967 + +0.4
1,751,967 + +0.3
1,751,968 - -0.6
1,751,972 - -0.3
1,751,972 - -0.1
1,752,134 - DDA3937_RS07750 0.19 -1.2
1,752,162 + DDA3937_RS07750 0.22 -0.8
1,752,162 + DDA3937_RS07750 0.22 -1.7
1,752,635 + DDA3937_RS07750 0.74 -2.4
1,752,705 + DDA3937_RS07750 0.81 -0.9
1,752,742 + DDA3937_RS07750 0.85 -0.3
1,752,742 + DDA3937_RS07750 0.85 -0.3
1,752,743 - DDA3937_RS07750 0.86 -1.2
1,753,048 + DDA3937_RS07755 0.17 -0.9
1,753,339 + DDA3937_RS07755 0.46 -0.8

Or see this region's nucleotide sequence