Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06895

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,543,713	-				-0.5
1,543,820	+				+0.6
1,543,905	-				+0.1
1,543,905	-				-0.2
1,543,913	+				-0.4
1,543,913	+				+0.0
1,543,913	+				+0.3
1,543,956	-		DDA3937_RS06890	0.11	+0.1
1,544,129	+		DDA3937_RS06890	0.47	+1.1
1,544,130	-		DDA3937_RS06890	0.47	-0.1
1,544,130	-		DDA3937_RS06890	0.47	-0.4
1,544,163	+		DDA3937_RS06890	0.53	+0.4
1,544,163	+		DDA3937_RS06890	0.53	-0.9
1,544,164	-		DDA3937_RS06890	0.54	+0.7
1,544,205	-		DDA3937_RS06890	0.62	-1.0
1,544,205	-		DDA3937_RS06890	0.62	-0.3
1,544,282	+		DDA3937_RS06890	0.78	+0.8
1,544,283	-		DDA3937_RS06890	0.78	-0.1
1,544,283	-		DDA3937_RS06890	0.78	+0.2
1,544,295	-		DDA3937_RS06890	0.81	+2.3
1,544,295	-		DDA3937_RS06890	0.81	+0.2
1,544,376	+				-0.9
1,544,376	+				-0.4
1,544,388	+				-2.1
1,544,388	+				+0.5
1,544,388	+				+0.5
1,544,388	+				-0.4
1,544,388	+				-1.8
1,544,388	+				-1.5
1,544,388	+				-2.3
1,544,388	+				-1.8
1,544,388	+				+1.4
1,544,389	-				-0.5
1,544,389	-				+0.2
1,544,389	-				+1.6
1,544,389	-				-0.1
1,544,389	-				-0.0
1,544,389	-				+0.1
1,544,389	-				+0.1
1,544,389	-				-1.0
1,544,390	+				-0.5
1,544,390	+				-1.1
1,544,390	+				-0.0
1,544,390	+				-1.1
1,544,390	+				+1.8
1,544,390	+				-0.7
1,544,390	+				+0.5
1,544,390	+				+0.2
1,544,390	+				+1.3
1,544,390	+				-1.1
1,544,391	-				-1.2
1,544,391	-				+0.1
1,544,391	-				-1.2
1,544,391	-				-0.7
1,544,391	-				-1.1
1,544,391	-				-0.1
1,544,391	-				-0.5
1,544,391	-				-0.0
1,544,449	+				+0.2
1,544,449	+				-0.3
1,544,450	-				+0.4
1,544,450	-				+0.0
1,544,486	+				-0.8
1,544,486	+				-0.1
1,544,487	-				+1.5
1,544,487	-				+0.3
1,544,487	-				-0.3
1,544,538	+				-0.4
1,544,538	+				-0.3
1,544,538	+				-1.0
1,544,538	+				-0.4
1,544,539	-				-0.3
1,544,589	-				+0.1
1,544,591	-				+0.0
1,544,623	-				+0.7
1,544,623	-				-0.9
1,544,770	+				-0.3
1,544,770	+				+0.4
1,544,770	+				-0.1
1,544,770	+				+0.5
1,544,771	-				-0.6
1,544,771	-				-0.7
1,544,771	-				+0.5
1,544,771	-				+0.7
1,544,774	+				-0.5
1,544,775	-				+0.7
1,544,775	-				+0.2
1,544,792	-		DDA3937_RS06895	0.12	-0.5
1,544,894	-		DDA3937_RS06895	0.23	+1.8
1,544,894	-		DDA3937_RS06895	0.23	+0.3
1,544,896	+		DDA3937_RS06895	0.23	-0.3
1,544,896	+		DDA3937_RS06895	0.23	+1.2
1,544,896	+		DDA3937_RS06895	0.23	+1.2
1,544,955	+		DDA3937_RS06895	0.30	-0.2
1,545,039	+		DDA3937_RS06895	0.39	-0.2
1,545,116	+		DDA3937_RS06895	0.48	+1.4
1,545,314	+		DDA3937_RS06895	0.70	-0.5
1,545,314	+		DDA3937_RS06895	0.70	+0.2
1,545,315	-		DDA3937_RS06895	0.70	-0.4
1,545,315	-		DDA3937_RS06895	0.70	-0.5
1,545,315	-		DDA3937_RS06895	0.70	-1.1
1,545,399	+		DDA3937_RS06895	0.80	-1.2
1,545,399	+		DDA3937_RS06895	0.80	+0.5
1,545,400	-		DDA3937_RS06895	0.80	-0.5
1,545,450	+		DDA3937_RS06895	0.85	-0.7
1,545,541	-				-1.0
1,545,558	+				+0.5
1,545,574	+				-0.5
1,545,575	-				-0.1
1,545,575	-				-0.6
1,545,575	-				+0.6
1,545,576	+				-0.3
1,545,576	+				-0.5
1,545,576	+				-0.5
1,545,576	+				-0.5
1,545,576	+				-0.3
1,545,576	+				-2.3
1,545,576	+				-0.1
1,545,577	-				+0.4
1,545,577	-				-0.1
1,545,577	-				-1.6
1,545,577	-				-0.2
1,545,580	+				-0.5
1,545,580	+				-0.3
1,545,580	+				-1.1
1,545,581	-				-0.4
1,545,581	-				+0.5
1,545,581	-				-0.0
1,545,587	+				-0.9
1,545,639	+				-0.5
1,545,639	+				-0.5
1,545,640	-				+1.1
1,545,640	-				+0.1
1,545,640	-				-0.8
1,545,640	-				-1.8
1,545,640	-				-0.7
1,545,640	-				+0.2
1,545,644	-				-0.8
1,545,665	+				+0.3
1,545,719	+				-1.1
1,545,720	-				-0.4
1,545,740	+				-0.1
1,545,740	+				-0.5
1,545,740	+				+0.1
1,545,740	+				-0.5
1,545,741	-				-0.0
1,545,764	+				-0.1
1,545,767	+				+0.5
1,545,786	-				-0.5
1,545,786	-				-1.1
1,545,786	-				+1.0
1,545,786	-				+0.1
1,545,786	-				+0.6
1,545,787	+				-0.9
1,545,787	+				+0.2
1,545,788	-				-0.6
1,545,788	-				-0.6
1,545,788	-				-0.6
1,545,788	-				+0.3
1,545,790	-				-0.9
1,545,790	-				-1.3
1,545,918	+				-1.0
1,545,918	+				-0.4
1,545,918	+				-0.3
1,545,918	+				+0.8
1,545,920	+				-0.7
1,545,921	-				-0.1
1,545,951	+				-1.3
1,545,973	-				-0.2
1,546,138	-		DDA3937_RS06900	0.32	-0.7
1,546,166	+		DDA3937_RS06900	0.40	+0.4
1,546,167	-		DDA3937_RS06900	0.40	+0.1
1,546,170	+		DDA3937_RS06900	0.41	-1.1
1,546,296	+		DDA3937_RS06900	0.79	+0.5
1,546,296	+		DDA3937_RS06900	0.79	-0.4
1,546,297	-		DDA3937_RS06900	0.79	-2.8
1,546,361	+				+0.0
1,546,361	+				+0.5
1,546,361	+				-0.3
1,546,361	+				-1.7
1,546,361	+				-0.7
1,546,372	-				-0.6
1,546,388	+				-0.4
1,546,389	-				-1.3
1,546,389	-				-0.2