Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06765
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
1,511,536 | - | DDA3937_RS06760 | 0.40 | -1.1 | |
1,511,729 | - | DDA3937_RS06760 | 0.60 | -0.4 | |
1,511,754 | + | DDA3937_RS06760 | 0.63 | -1.7 | |
1,511,827 | + | DDA3937_RS06760 | 0.71 | -0.1 | |
1,511,829 | + | DDA3937_RS06760 | 0.71 | +0.7 | |
1,511,829 | + | DDA3937_RS06760 | 0.71 | -2.3 | |
1,511,975 | - | DDA3937_RS06760 | 0.87 | +0.7 | |
1,512,148 | + | +0.2 | |||
1,512,169 | + | -0.1 | |||
1,512,216 | + | -0.2 | |||
1,512,243 | - | -1.3 | |||
1,512,551 | + | -0.3 | |||
1,512,551 | + | -0.1 | |||
1,512,771 | + | DDA3937_RS06765 | 0.32 | -2.3 | |
1,512,771 | + | DDA3937_RS06765 | 0.32 | +0.3 | |
1,512,772 | - | DDA3937_RS06765 | 0.32 | +0.1 | |
1,512,877 | + | DDA3937_RS06765 | 0.46 | +0.1 | |
1,512,941 | + | DDA3937_RS06765 | 0.54 | -2.0 | |
1,512,941 | + | DDA3937_RS06765 | 0.54 | -1.1 | |
1,512,943 | + | DDA3937_RS06765 | 0.54 | -1.8 | |
1,513,270 | - | -1.3 | |||
1,513,347 | - | -1.1 | |||
1,513,405 | - | -0.0 | |||
1,513,588 | + | -0.2 | |||
1,513,589 | - | +0.8 | |||
1,513,738 | - | +0.5 | |||
1,513,857 | + | -0.1 | |||
1,513,940 | - | -0.9 | |||
1,513,950 | + | -0.2 | |||
1,514,018 | + | DDA3937_RS23075 | 0.11 | +0.5 | |
1,514,025 | - | DDA3937_RS23075 | 0.11 | -1.3 | |
1,514,261 | + | DDA3937_RS23075 | 0.27 | -0.3 |
Or see this region's nucleotide sequence