Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS06760 and DDA3937_RS06765 are separated by 423 nucleotides DDA3937_RS06765 and DDA3937_RS23075 are separated by 556 nucleotides
DDA3937_RS06760: DDA3937_RS06760 - EpsG family protein, at 1,511,169 to 1,512,095
_RS06760
DDA3937_RS06765: DDA3937_RS06765 - DUF616 domain-containing protein, at 1,512,519 to 1,513,304
_RS06765
DDA3937_RS23075: DDA3937_RS23075 - hypothetical protein, at 1,513,861 to 1,515,339
_RS23075
Position (kb)
1512
1513
1514 Strain fitness (log2 ratio)
-2
-1
0
1 at 1511.536 kb on - strand, within DDA3937_RS06760 at 1511.729 kb on - strand, within DDA3937_RS06760 at 1511.754 kb on + strand, within DDA3937_RS06760 at 1511.827 kb on + strand, within DDA3937_RS06760 at 1511.829 kb on + strand, within DDA3937_RS06760 at 1511.829 kb on + strand, within DDA3937_RS06760 at 1511.975 kb on - strand, within DDA3937_RS06760 at 1512.148 kb on + strand at 1512.169 kb on + strand at 1512.216 kb on + strand at 1512.243 kb on - strand at 1512.551 kb on + strand at 1512.551 kb on + strand at 1512.771 kb on + strand, within DDA3937_RS06765 at 1512.771 kb on + strand, within DDA3937_RS06765 at 1512.772 kb on - strand, within DDA3937_RS06765 at 1512.877 kb on + strand, within DDA3937_RS06765 at 1512.941 kb on + strand, within DDA3937_RS06765 at 1512.941 kb on + strand, within DDA3937_RS06765 at 1512.943 kb on + strand, within DDA3937_RS06765 at 1513.270 kb on - strand at 1513.347 kb on - strand at 1513.405 kb on - strand at 1513.588 kb on + strand at 1513.589 kb on - strand at 1513.738 kb on - strand at 1513.857 kb on + strand at 1513.940 kb on - strand at 1513.950 kb on + strand at 1514.018 kb on + strand, within DDA3937_RS23075 at 1514.025 kb on - strand, within DDA3937_RS23075 at 1514.261 kb on + strand, within DDA3937_RS23075
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,511,536 - DDA3937_RS06760 0.40 -1.1 1,511,729 - DDA3937_RS06760 0.60 -0.4 1,511,754 + DDA3937_RS06760 0.63 -1.7 1,511,827 + DDA3937_RS06760 0.71 -0.1 1,511,829 + DDA3937_RS06760 0.71 +0.7 1,511,829 + DDA3937_RS06760 0.71 -2.3 1,511,975 - DDA3937_RS06760 0.87 +0.7 1,512,148 + +0.2 1,512,169 + -0.1 1,512,216 + -0.2 1,512,243 - -1.3 1,512,551 + -0.3 1,512,551 + -0.1 1,512,771 + DDA3937_RS06765 0.32 -2.3 1,512,771 + DDA3937_RS06765 0.32 +0.3 1,512,772 - DDA3937_RS06765 0.32 +0.1 1,512,877 + DDA3937_RS06765 0.46 +0.1 1,512,941 + DDA3937_RS06765 0.54 -2.0 1,512,941 + DDA3937_RS06765 0.54 -1.1 1,512,943 + DDA3937_RS06765 0.54 -1.8 1,513,270 - -1.3 1,513,347 - -1.1 1,513,405 - -0.0 1,513,588 + -0.2 1,513,589 - +0.8 1,513,738 - +0.5 1,513,857 + -0.1 1,513,940 - -0.9 1,513,950 + -0.2 1,514,018 + DDA3937_RS23075 0.11 +0.5 1,514,025 - DDA3937_RS23075 0.11 -1.3 1,514,261 + DDA3937_RS23075 0.27 -0.3
Or see this region's nucleotide sequence