Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06735

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS06730 and DDA3937_RS06735 are separated by 93 nucleotidesDDA3937_RS06735 and DDA3937_RS06740 are separated by 25 nucleotidesDDA3937_RS06740 and DDA3937_RS06745 are separated by 1 nucleotides DDA3937_RS06730: DDA3937_RS06730 - glycosyltransferase family 2 protein, at 1,505,210 to 1,506,121 _RS06730 DDA3937_RS06735: DDA3937_RS06735 - dTDP-glucose 4,6-dehydratase, at 1,506,215 to 1,507,279 _RS06735 DDA3937_RS06740: DDA3937_RS06740 - glucose-1-phosphate thymidylyltransferase RfbA, at 1,507,305 to 1,508,174 _RS06740 DDA3937_RS06745: DDA3937_RS06745 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 1,508,176 to 1,508,712 _RS06745 Position (kb) 1506 1507 1508Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1505.238 kb on - strandat 1505.238 kb on - strandat 1505.303 kb on + strand, within DDA3937_RS06730at 1505.303 kb on + strand, within DDA3937_RS06730at 1505.349 kb on + strand, within DDA3937_RS06730at 1505.380 kb on + strand, within DDA3937_RS06730at 1505.386 kb on + strand, within DDA3937_RS06730at 1505.387 kb on - strand, within DDA3937_RS06730at 1505.421 kb on + strand, within DDA3937_RS06730at 1505.438 kb on - strand, within DDA3937_RS06730at 1505.438 kb on - strand, within DDA3937_RS06730at 1505.444 kb on - strand, within DDA3937_RS06730at 1505.444 kb on - strand, within DDA3937_RS06730at 1505.447 kb on + strand, within DDA3937_RS06730at 1505.448 kb on - strand, within DDA3937_RS06730at 1505.453 kb on - strand, within DDA3937_RS06730at 1505.460 kb on + strand, within DDA3937_RS06730at 1505.601 kb on - strand, within DDA3937_RS06730at 1505.605 kb on + strand, within DDA3937_RS06730at 1505.605 kb on + strand, within DDA3937_RS06730at 1505.605 kb on + strand, within DDA3937_RS06730at 1505.606 kb on - strand, within DDA3937_RS06730at 1505.606 kb on - strand, within DDA3937_RS06730at 1505.606 kb on - strand, within DDA3937_RS06730at 1505.606 kb on - strand, within DDA3937_RS06730at 1505.606 kb on - strand, within DDA3937_RS06730at 1505.609 kb on + strand, within DDA3937_RS06730at 1505.662 kb on + strand, within DDA3937_RS06730at 1505.662 kb on + strand, within DDA3937_RS06730at 1505.662 kb on + strand, within DDA3937_RS06730at 1505.674 kb on + strand, within DDA3937_RS06730at 1505.674 kb on + strand, within DDA3937_RS06730at 1505.674 kb on + strand, within DDA3937_RS06730at 1505.675 kb on - strand, within DDA3937_RS06730at 1505.675 kb on - strand, within DDA3937_RS06730at 1505.696 kb on + strand, within DDA3937_RS06730at 1505.740 kb on + strand, within DDA3937_RS06730at 1505.758 kb on + strand, within DDA3937_RS06730at 1505.759 kb on - strand, within DDA3937_RS06730at 1505.762 kb on + strand, within DDA3937_RS06730at 1505.762 kb on + strand, within DDA3937_RS06730at 1505.762 kb on + strand, within DDA3937_RS06730at 1505.762 kb on + strand, within DDA3937_RS06730at 1505.763 kb on - strand, within DDA3937_RS06730at 1505.763 kb on - strand, within DDA3937_RS06730at 1505.793 kb on - strand, within DDA3937_RS06730at 1505.794 kb on + strand, within DDA3937_RS06730at 1505.794 kb on + strand, within DDA3937_RS06730at 1505.794 kb on + strand, within DDA3937_RS06730at 1505.794 kb on + strand, within DDA3937_RS06730at 1505.794 kb on + strand, within DDA3937_RS06730at 1505.795 kb on - strand, within DDA3937_RS06730at 1505.795 kb on - strand, within DDA3937_RS06730at 1505.804 kb on + strand, within DDA3937_RS06730at 1505.804 kb on + strand, within DDA3937_RS06730at 1505.804 kb on + strand, within DDA3937_RS06730at 1505.804 kb on + strandat 1505.804 kb on + strand, within DDA3937_RS06730at 1505.840 kb on + strand, within DDA3937_RS06730at 1505.867 kb on + strand, within DDA3937_RS06730at 1505.919 kb on + strand, within DDA3937_RS06730at 1505.919 kb on + strand, within DDA3937_RS06730at 1505.920 kb on - strand, within DDA3937_RS06730at 1505.920 kb on - strand, within DDA3937_RS06730at 1505.993 kb on + strand, within DDA3937_RS06730at 1505.995 kb on + strand, within DDA3937_RS06730at 1505.995 kb on + strand, within DDA3937_RS06730at 1505.996 kb on - strand, within DDA3937_RS06730at 1505.996 kb on - strand, within DDA3937_RS06730at 1506.041 kb on - strandat 1506.041 kb on - strandat 1506.056 kb on + strandat 1506.056 kb on + strandat 1506.094 kb on + strandat 1506.101 kb on - strandat 1506.160 kb on + strandat 1506.160 kb on + strandat 1506.160 kb on + strandat 1506.170 kb on - strandat 1506.176 kb on - strandat 1506.176 kb on - strandat 1506.183 kb on + strandat 1506.184 kb on - strandat 1506.184 kb on - strandat 1506.189 kb on - strandat 1506.211 kb on - strandat 1506.211 kb on - strandat 1506.220 kb on + strandat 1506.221 kb on - strandat 1506.271 kb on + strandat 1506.283 kb on + strandat 1506.321 kb on - strandat 1506.321 kb on - strandat 1506.514 kb on + strand, within DDA3937_RS06735at 1506.514 kb on + strand, within DDA3937_RS06735at 1506.527 kb on + strand, within DDA3937_RS06735at 1506.528 kb on - strand, within DDA3937_RS06735at 1506.528 kb on - strand, within DDA3937_RS06735at 1506.554 kb on + strand, within DDA3937_RS06735at 1506.604 kb on + strand, within DDA3937_RS06735at 1506.604 kb on + strand, within DDA3937_RS06735at 1506.604 kb on + strand, within DDA3937_RS06735at 1506.604 kb on + strand, within DDA3937_RS06735at 1506.605 kb on - strand, within DDA3937_RS06735at 1506.743 kb on + strand, within DDA3937_RS06735at 1506.743 kb on + strand, within DDA3937_RS06735at 1506.744 kb on - strand, within DDA3937_RS06735at 1506.744 kb on - strand, within DDA3937_RS06735at 1506.782 kb on + strand, within DDA3937_RS06735at 1506.782 kb on + strand, within DDA3937_RS06735at 1506.782 kb on + strand, within DDA3937_RS06735at 1506.782 kb on + strand, within DDA3937_RS06735at 1506.782 kb on + strand, within DDA3937_RS06735at 1506.893 kb on + strand, within DDA3937_RS06735at 1506.893 kb on + strand, within DDA3937_RS06735at 1506.894 kb on - strand, within DDA3937_RS06735at 1506.894 kb on - strand, within DDA3937_RS06735at 1506.894 kb on - strand, within DDA3937_RS06735at 1506.894 kb on - strand, within DDA3937_RS06735at 1506.894 kb on - strand, within DDA3937_RS06735at 1506.920 kb on + strand, within DDA3937_RS06735at 1506.956 kb on + strand, within DDA3937_RS06735at 1507.061 kb on + strand, within DDA3937_RS06735at 1507.202 kb on + strandat 1507.202 kb on + strandat 1507.203 kb on - strandat 1507.203 kb on - strandat 1507.235 kb on - strandat 1507.247 kb on + strandat 1507.247 kb on + strandat 1507.247 kb on + strandat 1507.283 kb on + strandat 1507.318 kb on + strandat 1507.318 kb on + strandat 1507.319 kb on - strandat 1507.348 kb on - strandat 1507.385 kb on + strandat 1507.385 kb on + strandat 1507.386 kb on - strandat 1507.389 kb on + strandat 1507.389 kb on + strandat 1507.407 kb on + strand, within DDA3937_RS06740at 1507.407 kb on + strand, within DDA3937_RS06740at 1507.407 kb on + strand, within DDA3937_RS06740at 1507.407 kb on + strand, within DDA3937_RS06740at 1507.407 kb on + strand, within DDA3937_RS06740at 1507.407 kb on + strand, within DDA3937_RS06740at 1507.407 kb on + strand, within DDA3937_RS06740at 1507.407 kb on + strand, within DDA3937_RS06740at 1507.408 kb on - strand, within DDA3937_RS06740at 1507.408 kb on - strand, within DDA3937_RS06740at 1507.408 kb on - strand, within DDA3937_RS06740at 1507.592 kb on + strand, within DDA3937_RS06740at 1507.592 kb on + strand, within DDA3937_RS06740at 1507.791 kb on - strand, within DDA3937_RS06740at 1507.791 kb on - strand, within DDA3937_RS06740at 1507.824 kb on + strand, within DDA3937_RS06740at 1507.824 kb on + strand, within DDA3937_RS06740at 1507.825 kb on - strand, within DDA3937_RS06740at 1507.914 kb on + strand, within DDA3937_RS06740at 1507.914 kb on + strand, within DDA3937_RS06740at 1507.914 kb on + strand, within DDA3937_RS06740at 1507.914 kb on + strand, within DDA3937_RS06740at 1507.914 kb on + strand, within DDA3937_RS06740at 1507.915 kb on - strand, within DDA3937_RS06740at 1507.915 kb on - strand, within DDA3937_RS06740at 1507.915 kb on - strand, within DDA3937_RS06740at 1507.915 kb on - strand, within DDA3937_RS06740at 1508.119 kb on - strandat 1508.158 kb on + strandat 1508.158 kb on + strandat 1508.158 kb on + strandat 1508.158 kb on + strandat 1508.175 kb on + strandat 1508.176 kb on - strandat 1508.176 kb on - strandat 1508.176 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,505,238 - -1.3
1,505,238 - +0.3
1,505,303 + DDA3937_RS06730 0.10 +1.5
1,505,303 + DDA3937_RS06730 0.10 +1.1
1,505,349 + DDA3937_RS06730 0.15 +0.1
1,505,380 + DDA3937_RS06730 0.19 -0.5
1,505,386 + DDA3937_RS06730 0.19 +1.0
1,505,387 - DDA3937_RS06730 0.19 -0.8
1,505,421 + DDA3937_RS06730 0.23 -1.4
1,505,438 - DDA3937_RS06730 0.25 -1.5
1,505,438 - DDA3937_RS06730 0.25 -0.3
1,505,444 - DDA3937_RS06730 0.26 -0.6
1,505,444 - DDA3937_RS06730 0.26 -0.0
1,505,447 + DDA3937_RS06730 0.26 -0.1
1,505,448 - DDA3937_RS06730 0.26 -2.1
1,505,453 - DDA3937_RS06730 0.27 -0.1
1,505,460 + DDA3937_RS06730 0.27 +0.0
1,505,601 - DDA3937_RS06730 0.43 -0.0
1,505,605 + DDA3937_RS06730 0.43 +0.2
1,505,605 + DDA3937_RS06730 0.43 -0.3
1,505,605 + DDA3937_RS06730 0.43 -1.4
1,505,606 - DDA3937_RS06730 0.43 -2.3
1,505,606 - DDA3937_RS06730 0.43 -0.2
1,505,606 - DDA3937_RS06730 0.43 -0.7
1,505,606 - DDA3937_RS06730 0.43 -0.6
1,505,606 - DDA3937_RS06730 0.43 +1.3
1,505,609 + DDA3937_RS06730 0.44 -0.8
1,505,662 + DDA3937_RS06730 0.50 +0.1
1,505,662 + DDA3937_RS06730 0.50 +0.1
1,505,662 + DDA3937_RS06730 0.50 -0.2
1,505,674 + DDA3937_RS06730 0.51 +0.5
1,505,674 + DDA3937_RS06730 0.51 -0.2
1,505,674 + DDA3937_RS06730 0.51 -0.4
1,505,675 - DDA3937_RS06730 0.51 -1.1
1,505,675 - DDA3937_RS06730 0.51 -0.3
1,505,696 + DDA3937_RS06730 0.53 +0.2
1,505,740 + DDA3937_RS06730 0.58 +0.3
1,505,758 + DDA3937_RS06730 0.60 +1.7
1,505,759 - DDA3937_RS06730 0.60 -0.1
1,505,762 + DDA3937_RS06730 0.61 -0.2
1,505,762 + DDA3937_RS06730 0.61 -1.2
1,505,762 + DDA3937_RS06730 0.61 -0.6
1,505,762 + DDA3937_RS06730 0.61 +1.1
1,505,763 - DDA3937_RS06730 0.61 -0.5
1,505,763 - DDA3937_RS06730 0.61 -0.2
1,505,793 - DDA3937_RS06730 0.64 -1.5
1,505,794 + DDA3937_RS06730 0.64 +0.5
1,505,794 + DDA3937_RS06730 0.64 +1.3
1,505,794 + DDA3937_RS06730 0.64 +1.5
1,505,794 + DDA3937_RS06730 0.64 +0.1
1,505,794 + DDA3937_RS06730 0.64 +0.3
1,505,795 - DDA3937_RS06730 0.64 -2.0
1,505,795 - DDA3937_RS06730 0.64 -0.5
1,505,804 + DDA3937_RS06730 0.65 +0.5
1,505,804 + DDA3937_RS06730 0.65 +0.1
1,505,804 + DDA3937_RS06730 0.65 +0.1
1,505,804 + +0.5
1,505,804 + DDA3937_RS06730 0.65 +0.4
1,505,840 + DDA3937_RS06730 0.69 -0.3
1,505,867 + DDA3937_RS06730 0.72 +0.0
1,505,919 + DDA3937_RS06730 0.78 +0.6
1,505,919 + DDA3937_RS06730 0.78 +0.1
1,505,920 - DDA3937_RS06730 0.78 -0.7
1,505,920 - DDA3937_RS06730 0.78 +0.3
1,505,993 + DDA3937_RS06730 0.86 +0.8
1,505,995 + DDA3937_RS06730 0.86 +0.1
1,505,995 + DDA3937_RS06730 0.86 -0.3
1,505,996 - DDA3937_RS06730 0.86 -1.0
1,505,996 - DDA3937_RS06730 0.86 -1.5
1,506,041 - -0.8
1,506,041 - -0.4
1,506,056 + -0.1
1,506,056 + +0.3
1,506,094 + -0.4
1,506,101 - -1.0
1,506,160 + +0.6
1,506,160 + -0.0
1,506,160 + +0.5
1,506,170 - -0.6
1,506,176 - -1.1
1,506,176 - -0.5
1,506,183 + -1.1
1,506,184 - +0.2
1,506,184 - -0.4
1,506,189 - -0.7
1,506,211 - -2.2
1,506,211 - -1.2
1,506,220 + -1.5
1,506,221 - -0.3
1,506,271 + -0.1
1,506,283 + -1.0
1,506,321 - -0.9
1,506,321 - -3.3
1,506,514 + DDA3937_RS06735 0.28 -1.4
1,506,514 + DDA3937_RS06735 0.28 -1.6
1,506,527 + DDA3937_RS06735 0.29 -0.8
1,506,528 - DDA3937_RS06735 0.29 -1.3
1,506,528 - DDA3937_RS06735 0.29 -1.7
1,506,554 + DDA3937_RS06735 0.32 -1.1
1,506,604 + DDA3937_RS06735 0.37 -2.5
1,506,604 + DDA3937_RS06735 0.37 -0.7
1,506,604 + DDA3937_RS06735 0.37 +0.5
1,506,604 + DDA3937_RS06735 0.37 -3.8
1,506,605 - DDA3937_RS06735 0.37 -0.1
1,506,743 + DDA3937_RS06735 0.50 -0.7
1,506,743 + DDA3937_RS06735 0.50 +0.5
1,506,744 - DDA3937_RS06735 0.50 -2.0
1,506,744 - DDA3937_RS06735 0.50 -1.6
1,506,782 + DDA3937_RS06735 0.53 -0.7
1,506,782 + DDA3937_RS06735 0.53 -1.0
1,506,782 + DDA3937_RS06735 0.53 -0.7
1,506,782 + DDA3937_RS06735 0.53 +0.2
1,506,782 + DDA3937_RS06735 0.53 -0.9
1,506,893 + DDA3937_RS06735 0.64 +0.1
1,506,893 + DDA3937_RS06735 0.64 -1.4
1,506,894 - DDA3937_RS06735 0.64 -0.2
1,506,894 - DDA3937_RS06735 0.64 -1.8
1,506,894 - DDA3937_RS06735 0.64 -1.1
1,506,894 - DDA3937_RS06735 0.64 -1.8
1,506,894 - DDA3937_RS06735 0.64 -2.1
1,506,920 + DDA3937_RS06735 0.66 -2.3
1,506,956 + DDA3937_RS06735 0.70 +2.3
1,507,061 + DDA3937_RS06735 0.79 -2.0
1,507,202 + -1.8
1,507,202 + -0.9
1,507,203 - -0.2
1,507,203 - -0.8
1,507,235 - -1.1
1,507,247 + -0.4
1,507,247 + +0.9
1,507,247 + -0.3
1,507,283 + -0.1
1,507,318 + -2.1
1,507,318 + -0.3
1,507,319 - -0.7
1,507,348 - -1.3
1,507,385 + -0.1
1,507,385 + -0.3
1,507,386 - -0.3
1,507,389 + -2.3
1,507,389 + +1.5
1,507,407 + DDA3937_RS06740 0.12 -2.7
1,507,407 + DDA3937_RS06740 0.12 -0.5
1,507,407 + DDA3937_RS06740 0.12 -0.0
1,507,407 + DDA3937_RS06740 0.12 -1.1
1,507,407 + DDA3937_RS06740 0.12 -1.3
1,507,407 + DDA3937_RS06740 0.12 -0.9
1,507,407 + DDA3937_RS06740 0.12 -1.0
1,507,407 + DDA3937_RS06740 0.12 +1.2
1,507,408 - DDA3937_RS06740 0.12 +0.7
1,507,408 - DDA3937_RS06740 0.12 +0.6
1,507,408 - DDA3937_RS06740 0.12 -0.7
1,507,592 + DDA3937_RS06740 0.33 -1.0
1,507,592 + DDA3937_RS06740 0.33 -0.1
1,507,791 - DDA3937_RS06740 0.56 -0.1
1,507,791 - DDA3937_RS06740 0.56 -1.5
1,507,824 + DDA3937_RS06740 0.60 -1.1
1,507,824 + DDA3937_RS06740 0.60 -2.0
1,507,825 - DDA3937_RS06740 0.60 -2.5
1,507,914 + DDA3937_RS06740 0.70 -0.6
1,507,914 + DDA3937_RS06740 0.70 -0.2
1,507,914 + DDA3937_RS06740 0.70 -1.4
1,507,914 + DDA3937_RS06740 0.70 -0.9
1,507,914 + DDA3937_RS06740 0.70 -0.6
1,507,915 - DDA3937_RS06740 0.70 +0.2
1,507,915 - DDA3937_RS06740 0.70 -1.5
1,507,915 - DDA3937_RS06740 0.70 -0.0
1,507,915 - DDA3937_RS06740 0.70 +0.1
1,508,119 - -0.8
1,508,158 + +0.2
1,508,158 + +1.3
1,508,158 + -0.2
1,508,158 + +1.7
1,508,175 + -1.6
1,508,176 - -0.5
1,508,176 - -0.3
1,508,176 - -0.6

Or see this region's nucleotide sequence