Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06015

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,354,682	+		DDA3937_RS06010	0.45	-0.1
1,354,682	+		DDA3937_RS06010	0.45	-1.2
1,354,682	+		DDA3937_RS06010	0.45	-1.0
1,354,682	+		DDA3937_RS06010	0.45	-0.1
1,354,683	-		DDA3937_RS06010	0.45	-0.4
1,354,683	-		DDA3937_RS06010	0.45	+1.8
1,354,683	-		DDA3937_RS06010	0.45	+1.0
1,354,683	-		DDA3937_RS06010	0.45	-0.0
1,354,683	-		DDA3937_RS06010	0.45	+0.3
1,354,844	+		DDA3937_RS06010	0.61	+0.3
1,354,844	+		DDA3937_RS06010	0.61	-0.8
1,354,845	-		DDA3937_RS06010	0.61	-0.2
1,354,845	-		DDA3937_RS06010	0.61	-0.3
1,354,847	+		DDA3937_RS06010	0.61	+0.8
1,354,847	+		DDA3937_RS06010	0.61	+0.4
1,354,847	+		DDA3937_RS06010	0.61	+0.0
1,354,848	-		DDA3937_RS06010	0.61	+0.0
1,354,848	-		DDA3937_RS06010	0.61	+0.3
1,354,848	-		DDA3937_RS06010	0.61	+1.3
1,354,848	-		DDA3937_RS06010	0.61	-0.5
1,354,848	-		DDA3937_RS06010	0.61	-1.4
1,354,859	+		DDA3937_RS06010	0.62	-0.3
1,354,859	+		DDA3937_RS06010	0.62	-1.2
1,354,859	+		DDA3937_RS06010	0.62	+1.1
1,354,909	+		DDA3937_RS06010	0.67	+1.0
1,354,910	-		DDA3937_RS06010	0.68	-1.6
1,355,095	-		DDA3937_RS06010	0.86	-0.5
1,355,129	+		DDA3937_RS06010	0.90	+1.0
1,355,130	-				-0.4
1,355,130	-		DDA3937_RS06010	0.90	+0.2
1,355,130	-		DDA3937_RS06010	0.90	+1.1
1,355,135	+				-0.4
1,355,136	-				-1.7
1,355,136	-				-0.2
1,355,136	-				-1.0
1,355,136	-				-1.0
1,355,226	+				-1.0
1,355,227	-				-0.2
1,355,227	-				+0.8
1,355,227	-				-0.5
1,355,227	-				-0.2
1,355,227	-				-0.8
1,355,227	-				-0.5
1,355,227	-				-0.1
1,355,236	-				+0.1
1,355,247	+				-1.6
1,355,247	+				-1.4
1,355,247	+				-0.9
1,355,256	+				-0.1
1,355,256	+				+0.2
1,355,256	+				-0.4
1,355,256	+				-0.8
1,355,257	-				+0.6
1,355,286	+				+0.3
1,355,287	-				+0.3
1,355,292	+				-0.9
1,355,292	+				-0.4
1,355,293	-				-0.2
1,355,293	-				-1.6
1,355,293	-				-0.2
1,355,293	-				+0.9
1,355,293	-				-0.8
1,355,293	-				+0.1
1,355,293	-				-0.0
1,355,293	-				-0.5
1,355,293	-				+0.5
1,355,293	-				+1.0
1,355,293	-				-0.1
1,355,295	+				-1.8
1,355,295	+				-1.7
1,355,308	+				-0.7
1,355,308	+				-0.4
1,355,369	+				+1.2
1,355,445	+				+1.1
1,355,446	-				+0.7
1,355,519	-				-0.6
1,355,521	+				-0.8
1,355,522	-				-0.4
1,355,522	-				-1.0
1,355,544	+				-0.9
1,355,557	+				-0.9
1,355,557	+				-0.4
1,355,558	-				-0.1
1,355,576	+				-1.2
1,355,576	+				+0.0
1,355,577	-				-0.4
1,355,589	-				-0.4
1,355,894	+		DDA3937_RS06015	0.22	-0.6
1,355,938	+		DDA3937_RS06015	0.27	+0.1
1,356,006	+		DDA3937_RS06015	0.34	+0.1
1,356,007	-		DDA3937_RS06015	0.34	+0.1
1,356,083	+		DDA3937_RS06015	0.41	+1.2
1,356,162	-		DDA3937_RS06015	0.49	+0.6
1,356,218	-		DDA3937_RS06015	0.55	+0.3
1,356,291	+		DDA3937_RS06015	0.62	+0.7
1,356,292	-		DDA3937_RS06015	0.62	+1.0
1,356,306	+		DDA3937_RS06015	0.64	+1.7
1,356,307	-		DDA3937_RS06015	0.64	+0.1
1,356,377	-		DDA3937_RS06015	0.71	-0.2
1,356,377	-		DDA3937_RS06015	0.71	-1.7
1,356,672	+				+0.4
1,356,672	+				-0.7
1,356,731	-				+1.3
1,356,824	+				-0.1
1,356,824	+				-0.5
1,356,825	-				-0.1
1,356,874	+				+0.4
1,356,875	-				-0.3
1,356,919	+				+0.6
1,356,928	+				+1.6
1,356,928	+				-0.6
1,356,928	+				+0.3
1,356,929	-				-0.3
1,356,929	-				-0.3
1,356,929	-				+0.1
1,356,929	-				-0.1
1,356,932	-				+0.3
1,356,942	+				+0.4
1,356,942	+				-0.5
1,356,942	+				-0.4
1,356,942	+				+0.3
1,356,943	-				-0.2
1,356,949	-				-0.3
1,357,053	+		DDA3937_RS06020	0.17	-1.9
1,357,053	+		DDA3937_RS06020	0.17	+1.1
1,357,054	-		DDA3937_RS06020	0.17	-0.3
1,357,062	+		DDA3937_RS06020	0.18	-0.7
1,357,062	+		DDA3937_RS06020	0.18	-0.0
1,357,062	+		DDA3937_RS06020	0.18	-1.0
1,357,063	-		DDA3937_RS06020	0.18	+1.3
1,357,063	-		DDA3937_RS06020	0.18	+0.1
1,357,184	-		DDA3937_RS06020	0.37	-0.3
1,357,321	-		DDA3937_RS06020	0.59	+0.0
1,357,321	-		DDA3937_RS06020	0.59	-0.4
1,357,321	-		DDA3937_RS06020	0.59	-1.0
1,357,337	+		DDA3937_RS06020	0.61	-0.8
1,357,337	+		DDA3937_RS06020	0.61	-0.3
1,357,337	+		DDA3937_RS06020	0.61	-0.2
1,357,338	-		DDA3937_RS06020	0.61	+0.2
1,357,338	-		DDA3937_RS06020	0.61	-0.1
1,357,338	-		DDA3937_RS06020	0.61	-0.4
1,357,338	-		DDA3937_RS06020	0.61	-0.2
1,357,402	-		DDA3937_RS06020	0.71	-0.7
1,357,484	+		DDA3937_RS06020	0.84	-0.3
1,357,492	+		DDA3937_RS06020	0.85	-0.3
1,357,493	-		DDA3937_RS06020	0.85	-0.7
1,357,593	+				+1.2
1,357,593	+				+2.4