Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05895

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,324,955	+		DDA3937_RS05890	0.70	+0.1
1,325,003	+		DDA3937_RS05890	0.72	-0.7
1,325,003	+		DDA3937_RS05890	0.72	+0.2
1,325,104	-		DDA3937_RS05890	0.76	+1.9
1,325,104	-		DDA3937_RS05890	0.76	-0.9
1,325,293	-		DDA3937_RS05890	0.82	+0.3
1,325,298	-		DDA3937_RS05890	0.82	+0.3
1,325,336	+		DDA3937_RS05890	0.84	-0.5
1,325,336	+		DDA3937_RS05890	0.84	-1.0
1,325,336	+		DDA3937_RS05890	0.84	-1.0
1,325,336	+		DDA3937_RS05890	0.84	-0.3
1,325,336	+		DDA3937_RS05890	0.84	-2.4
1,325,336	+		DDA3937_RS05890	0.84	-0.8
1,325,337	-		DDA3937_RS05890	0.84	-1.0
1,325,340	+		DDA3937_RS05890	0.84	-1.4
1,325,395	-		DDA3937_RS05890	0.86	-0.6
1,325,533	+				+0.2
1,325,556	-				-1.0
1,325,558	+				+0.2
1,325,635	+				-0.3
1,325,641	+				-1.0
1,325,706	-				+0.6
1,325,735	+				-0.1
1,325,758	-				-2.0
1,325,758	-				+0.6
1,325,761	-				+0.1
1,325,761	-				-0.0
1,325,863	+				+0.4
1,325,863	+				-2.3
1,325,863	+				-0.4
1,325,864	-				-0.2
1,325,864	-				-1.4
1,325,864	-				-0.8
1,325,864	-				-0.4
1,325,902	+				-0.4
1,325,902	+				-0.2
1,325,902	+				-0.5
1,325,964	-		DDA3937_RS05895	0.16	-0.8
1,326,259	-		DDA3937_RS05895	0.61	-0.7
1,326,264	-		DDA3937_RS05895	0.62	+0.1
1,326,293	+		DDA3937_RS05895	0.66	-0.0
1,326,293	+		DDA3937_RS05895	0.66	-0.4
1,326,295	+		DDA3937_RS05895	0.67	-0.7
1,326,295	+		DDA3937_RS05895	0.67	-0.7
1,326,322	+		DDA3937_RS05895	0.71	+0.2
1,326,322	+		DDA3937_RS05895	0.71	-2.6
1,326,342	+				+1.6
1,326,342	+		DDA3937_RS05895	0.74	-1.7
1,326,343	-		DDA3937_RS05895	0.74	-1.4
1,326,491	+				-0.4
1,326,495	+				+0.4
1,326,526	+				-0.1
1,326,526	+				-0.6
1,326,527	-				+0.1
1,326,527	-				+0.5
1,326,527	-				+0.3
1,326,527	-				+0.9
1,326,527	-				+0.1
1,326,527	-				-0.0
1,326,527	-				-0.9
1,326,591	+				-0.3
1,326,592	-				+0.5
1,326,592	-				-0.8
1,326,614	+				-2.0
1,326,640	-				-2.6
1,326,737	+				-0.4
1,326,737	+				-0.2
1,326,737	+				+1.9
1,326,737	+				-0.3
1,326,738	-				+0.6
1,326,738	-				-0.4
1,326,738	-				-1.0
1,326,738	-				-0.4
1,326,738	-				+0.1
1,326,738	-				+0.1
1,326,738	-				-1.4
1,326,738	-				-1.7
1,326,738	-				+0.3
1,326,738	-				+1.2
1,326,739	+				+1.3
1,326,739	+				-0.7
1,326,739	+				-0.7
1,326,740	-				+0.2
1,326,740	-				+0.6
1,326,740	-				+1.4
1,326,740	-				+0.2
1,326,740	-				-0.2
1,326,740	-				-1.2
1,326,740	-				+0.1
1,326,740	-				-1.0
1,326,741	+				-1.4
1,326,742	-				-0.1
1,326,742	-				+0.7
1,326,742	-				-0.1
1,326,767	+				-0.7
1,326,768	-				-0.5
1,326,785	-				-0.4
1,326,785	-				+1.6
1,326,788	-		DDA3937_RS05900	0.10	+0.6
1,326,801	+		DDA3937_RS05900	0.11	-1.7
1,326,814	+		DDA3937_RS05900	0.11	-1.3
1,326,814	+		DDA3937_RS05900	0.11	-1.0
1,326,814	+		DDA3937_RS05900	0.11	+0.6
1,326,815	-		DDA3937_RS05900	0.11	-0.3
1,326,815	-		DDA3937_RS05900	0.11	-1.0
1,326,815	-		DDA3937_RS05900	0.11	-1.0
1,326,815	-		DDA3937_RS05900	0.11	-1.3
1,326,815	-		DDA3937_RS05900	0.11	-0.1
1,326,815	-		DDA3937_RS05900	0.11	-1.1
1,326,907	-		DDA3937_RS05900	0.15	+0.2
1,326,922	+		DDA3937_RS05900	0.15	-1.1
1,326,922	+		DDA3937_RS05900	0.15	+0.1
1,326,923	-		DDA3937_RS05900	0.15	-1.4
1,326,923	-		DDA3937_RS05900	0.15	-1.4
1,326,923	-		DDA3937_RS05900	0.15	-0.4
1,326,929	+		DDA3937_RS05900	0.15	-3.2
1,326,961	-		DDA3937_RS05900	0.17	-0.6
1,326,961	-		DDA3937_RS05900	0.17	-1.4
1,326,961	-		DDA3937_RS05900	0.17	+0.9
1,326,990	-		DDA3937_RS05900	0.18	+0.7
1,327,061	-		DDA3937_RS05900	0.20	-0.0
1,327,061	-		DDA3937_RS05900	0.20	-0.7
1,327,062	+		DDA3937_RS05900	0.20	+0.6
1,327,085	+		DDA3937_RS05900	0.21	-0.3
1,327,106	+		DDA3937_RS05900	0.22	-2.0
1,327,107	-		DDA3937_RS05900	0.22	+0.1
1,327,107	-		DDA3937_RS05900	0.22	-0.8
1,327,109	+		DDA3937_RS05900	0.22	-0.1
1,327,109	+		DDA3937_RS05900	0.22	-1.7
1,327,109	+		DDA3937_RS05900	0.22	-1.0
1,327,109	+		DDA3937_RS05900	0.22	-0.8
1,327,110	-		DDA3937_RS05900	0.22	+0.3
1,327,110	-		DDA3937_RS05900	0.22	-1.4
1,327,110	-		DDA3937_RS05900	0.22	-1.0
1,327,110	-		DDA3937_RS05900	0.22	-1.0
1,327,110	-		DDA3937_RS05900	0.22	+0.3
1,327,127	+				-0.4
1,327,127	+				-1.4
1,327,128	-				-2.0
1,327,128	-		DDA3937_RS05900	0.23	+0.6
1,327,128	-		DDA3937_RS05900	0.23	+0.6
1,327,288	-		DDA3937_RS05900	0.29	-1.3
1,327,293	+		DDA3937_RS05900	0.29	-1.3
1,327,293	+		DDA3937_RS05900	0.29	+0.2
1,327,294	-		DDA3937_RS05900	0.29	+0.4
1,327,299	+		DDA3937_RS05900	0.29	-0.0