Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05850

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,311,952	+		DDA3937_RS05845	0.81	-1.4
1,311,953	-		DDA3937_RS05845	0.81	-0.7
1,312,172	+		DDA3937_RS05845	0.89	-0.5
1,312,172	+		DDA3937_RS05845	0.89	+1.3
1,312,173	-		DDA3937_RS05845	0.89	+0.0
1,312,173	-		DDA3937_RS05845	0.89	-0.3
1,312,273	+				-0.1
1,312,303	-				+0.3
1,312,365	+				+0.5
1,312,365	+				+2.6
1,312,365	+				-0.6
1,312,366	-				+0.0
1,312,376	+				-1.0
1,312,377	-				-0.6
1,312,377	-				-0.5
1,312,377	-				-0.7
1,312,377	-				-2.0
1,312,377	-				-0.8
1,312,377	-				+0.4
1,312,469	+				+0.9
1,312,469	+				-0.5
1,312,483	+				-0.7
1,312,483	+				-1.1
1,312,483	+				-0.9
1,312,483	+				-1.1
1,312,483	+				+0.1
1,312,483	+				-1.0
1,312,483	+				-0.7
1,312,484	-				+0.0
1,312,484	-				+1.8
1,312,484	-				+0.9
1,312,484	-				-0.6
1,312,484	-				-0.2
1,312,486	+				+0.7
1,312,486	+				+0.3
1,312,486	+				-0.8
1,312,486	+				-0.5
1,312,487	-				+1.2
1,312,487	-				-0.3
1,312,487	-				+0.2
1,312,487	-				-1.0
1,312,487	-				-0.4
1,312,487	-				-0.4
1,312,489	+				-1.1
1,312,490	-				-0.5
1,312,547	+				-0.4
1,312,548	-				-1.4
1,312,553	+				-0.3
1,312,553	+				-1.0
1,312,553	+				+0.7
1,312,553	+				-0.0
1,312,553	+				-0.5
1,312,554	-				-0.2
1,312,554	-				+0.1
1,312,554	-				+0.9
1,312,554	-				-0.3
1,312,561	-				+0.4
1,312,561	-				-1.4
1,312,561	-				-0.3
1,312,571	+				+0.1
1,312,572	-				-0.8
1,312,613	-				-0.6
1,312,613	-				-1.2
1,312,664	+		DDA3937_RS05850	0.13	+0.5
1,312,664	+		DDA3937_RS05850	0.13	+0.9
1,312,664	+		DDA3937_RS05850	0.13	+0.5
1,312,665	-		DDA3937_RS05850	0.14	-1.2
1,312,665	-		DDA3937_RS05850	0.14	+0.2
1,312,722	-		DDA3937_RS05850	0.27	-0.8
1,312,736	-		DDA3937_RS05850	0.30	-0.3
1,312,736	-		DDA3937_RS05850	0.30	+0.6
1,312,828	-		DDA3937_RS05850	0.52	+0.4
1,312,856	-		DDA3937_RS05850	0.59	+0.6
1,312,856	-		DDA3937_RS05850	0.59	-0.1
1,312,856	-		DDA3937_RS05850	0.59	+0.5
1,312,856	-		DDA3937_RS05850	0.59	-0.5
1,312,856	-				-1.0
1,312,856	-		DDA3937_RS05850	0.59	+0.3
1,312,975	+		DDA3937_RS05850	0.87	-2.0
1,313,034	+				-2.7
1,313,035	-				+0.0
1,313,037	+				-0.7
1,313,037	+				-0.6
1,313,037	+				+0.3
1,313,038	-				+0.6
1,313,038	-				-2.2
1,313,038	-				+0.4
1,313,038	-				+0.4
1,313,038	-				-0.5
1,313,097	+				-0.3
1,313,097	+				+1.0
1,313,097	+				+0.2
1,313,097	+				-0.3
1,313,104	+				-1.0
1,313,104	+				-0.2
1,313,105	-				-0.3
1,313,157	+				-0.8
1,313,165	-				+0.3
1,313,228	+		DDA3937_RS05855	0.15	-0.1
1,313,311	+		DDA3937_RS05855	0.34	-0.6
1,313,311	+		DDA3937_RS05855	0.34	-0.7
1,313,311	+		DDA3937_RS05855	0.34	+0.2
1,313,311	+		DDA3937_RS05855	0.34	-1.0
1,313,311	+		DDA3937_RS05855	0.34	+0.3
1,313,312	-		DDA3937_RS05855	0.34	-0.4
1,313,312	-		DDA3937_RS05855	0.34	+0.6
1,313,312	-				+0.6
1,313,312	-		DDA3937_RS05855	0.34	-0.6
1,313,312	-		DDA3937_RS05855	0.34	+0.6
1,313,314	+		DDA3937_RS05855	0.34	+0.1
1,313,314	+		DDA3937_RS05855	0.34	-0.3
1,313,314	+		DDA3937_RS05855	0.34	-0.8
1,313,315	-		DDA3937_RS05855	0.35	-0.2
1,313,315	-		DDA3937_RS05855	0.35	-0.3
1,313,315	-		DDA3937_RS05855	0.35	-0.4
1,313,315	-		DDA3937_RS05855	0.35	-0.9
1,313,315	-		DDA3937_RS05855	0.35	-1.6
1,313,750	+		DDA3937_RS05860	0.15	-1.4
1,313,750	+				-1.4
1,313,750	+				+0.3
1,313,751	-				-0.4
1,313,751	-		DDA3937_RS05860	0.15	+0.5
1,313,768	+		DDA3937_RS05860	0.17	+0.4
1,313,768	+				-0.2
1,313,769	-		DDA3937_RS05860	0.17	-0.9
1,313,769	-		DDA3937_RS05860	0.17	-0.8
1,313,898	+		DDA3937_RS05860	0.31	+0.2
1,313,970	+		DDA3937_RS05860	0.39	-0.4
1,313,971	-		DDA3937_RS05860	0.39	+1.6
1,313,986	-		DDA3937_RS05860	0.41	-0.1