Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS05650 and DDA3937_RS05655 are separated by 194 nucleotides DDA3937_RS05655 and DDA3937_RS05660 are separated by 256 nucleotides DDA3937_RS05660 and DDA3937_RS05665 are separated by 138 nucleotides DDA3937_RS05665 and DDA3937_RS05670 are separated by 113 nucleotides
DDA3937_RS05650: DDA3937_RS05650 - endopeptidase La, at 1,261,816 to 1,264,179
_RS05650
DDA3937_RS05655: DDA3937_RS05655 - DNA-binding protein HU-beta, at 1,264,374 to 1,264,646
_RS05655
DDA3937_RS05660: DDA3937_RS05660 - peptidylprolyl isomerase, at 1,264,903 to 1,266,783
_RS05660
DDA3937_RS05665: DDA3937_RS05665 - helix-hairpin-helix domain-containing protein, at 1,266,922 to 1,267,296
_RS05665
DDA3937_RS05670: DDA3937_RS05670 - 7-cyano-7-deazaguanine synthase QueC, at 1,267,410 to 1,268,105
_RS05670
Position (kb) 1264
1265
1266
1267 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1264.142 kb on - strand at 1264.142 kb on - strand at 1264.185 kb on + strand at 1264.219 kb on - strand at 1264.223 kb on - strand at 1264.312 kb on + strand at 1264.312 kb on + strand at 1264.318 kb on + strand at 1264.318 kb on + strand at 1264.318 kb on + strand at 1264.319 kb on - strand at 1264.345 kb on - strand at 1264.348 kb on - strand at 1264.348 kb on - strand at 1264.348 kb on - strand at 1264.353 kb on + strand at 1264.353 kb on + strand at 1264.419 kb on - strand, within DDA3937_RS05655 at 1264.458 kb on - strand, within DDA3937_RS05655 at 1264.469 kb on + strand, within DDA3937_RS05655 at 1264.470 kb on - strand, within DDA3937_RS05655 at 1264.505 kb on - strand, within DDA3937_RS05655 at 1264.517 kb on + strand, within DDA3937_RS05655 at 1264.517 kb on + strand, within DDA3937_RS05655 at 1264.518 kb on - strand, within DDA3937_RS05655 at 1264.556 kb on + strand, within DDA3937_RS05655 at 1264.556 kb on + strand, within DDA3937_RS05655 at 1264.584 kb on - strand, within DDA3937_RS05655 at 1264.650 kb on + strand at 1264.650 kb on + strand at 1264.651 kb on - strand at 1264.651 kb on - strand at 1264.651 kb on - strand at 1264.652 kb on + strand at 1264.652 kb on + strand at 1264.652 kb on + strand at 1264.652 kb on + strand at 1264.652 kb on + strand at 1264.652 kb on + strand at 1264.652 kb on + strand at 1264.652 kb on + strand at 1264.653 kb on - strand at 1264.653 kb on - strand at 1264.653 kb on - strand at 1264.653 kb on - strand at 1264.653 kb on - strand at 1264.653 kb on - strand at 1264.653 kb on - strand at 1264.653 kb on - strand at 1264.653 kb on - strand at 1264.653 kb on - strand at 1264.697 kb on + strand at 1264.698 kb on - strand at 1264.724 kb on - strand at 1264.724 kb on - strand at 1264.728 kb on + strand at 1264.728 kb on + strand at 1264.728 kb on + strand at 1264.728 kb on + strand at 1264.728 kb on + strand at 1264.729 kb on - strand at 1264.729 kb on - strand at 1264.729 kb on - strand at 1264.729 kb on - strand at 1264.729 kb on - strand at 1264.730 kb on + strand at 1264.730 kb on + strand at 1264.730 kb on + strand at 1264.731 kb on - strand at 1264.731 kb on - strand at 1264.731 kb on - strand at 1264.731 kb on - strand at 1264.745 kb on + strand at 1264.745 kb on + strand at 1264.773 kb on - strand at 1264.778 kb on + strand at 1264.778 kb on + strand at 1264.778 kb on + strand at 1264.778 kb on + strand at 1264.779 kb on - strand at 1264.785 kb on - strand at 1264.824 kb on + strand at 1264.826 kb on + strand at 1264.826 kb on + strand at 1264.826 kb on + strand at 1264.826 kb on + strand at 1264.826 kb on + strand at 1264.832 kb on + strand at 1264.832 kb on + strand at 1264.882 kb on - strand at 1264.902 kb on + strand at 1264.902 kb on + strand at 1264.902 kb on + strand at 1264.902 kb on + strand at 1264.902 kb on + strand at 1264.903 kb on - strand at 1264.903 kb on - strand at 1264.903 kb on - strand at 1265.000 kb on - strand at 1265.006 kb on + strand at 1265.006 kb on + strand at 1265.006 kb on + strand at 1265.007 kb on - strand at 1265.007 kb on - strand at 1265.149 kb on + strand, within DDA3937_RS05660 at 1265.149 kb on + strand, within DDA3937_RS05660 at 1265.149 kb on + strand, within DDA3937_RS05660 at 1265.149 kb on + strand at 1265.150 kb on - strand, within DDA3937_RS05660 at 1265.150 kb on - strand, within DDA3937_RS05660 at 1265.151 kb on + strand, within DDA3937_RS05660 at 1265.151 kb on + strand, within DDA3937_RS05660 at 1265.151 kb on + strand, within DDA3937_RS05660 at 1265.151 kb on + strand, within DDA3937_RS05660 at 1265.152 kb on - strand, within DDA3937_RS05660 at 1265.152 kb on - strand, within DDA3937_RS05660 at 1265.152 kb on - strand, within DDA3937_RS05660 at 1265.152 kb on - strand, within DDA3937_RS05660 at 1265.152 kb on - strand, within DDA3937_RS05660 at 1265.212 kb on + strand, within DDA3937_RS05660 at 1265.213 kb on - strand, within DDA3937_RS05660 at 1265.213 kb on - strand, within DDA3937_RS05660 at 1265.213 kb on - strand, within DDA3937_RS05660 at 1265.310 kb on + strand, within DDA3937_RS05660 at 1265.310 kb on + strand, within DDA3937_RS05660 at 1265.310 kb on + strand, within DDA3937_RS05660 at 1265.310 kb on + strand, within DDA3937_RS05660 at 1265.310 kb on + strand, within DDA3937_RS05660 at 1265.310 kb on + strand, within DDA3937_RS05660 at 1265.310 kb on + strand, within DDA3937_RS05660 at 1265.310 kb on + strand, within DDA3937_RS05660 at 1265.311 kb on - strand, within DDA3937_RS05660 at 1265.311 kb on - strand, within DDA3937_RS05660 at 1265.311 kb on - strand, within DDA3937_RS05660 at 1265.314 kb on + strand, within DDA3937_RS05660 at 1265.314 kb on + strand, within DDA3937_RS05660 at 1265.315 kb on - strand, within DDA3937_RS05660 at 1265.381 kb on + strand, within DDA3937_RS05660 at 1265.381 kb on + strand, within DDA3937_RS05660 at 1265.381 kb on + strand, within DDA3937_RS05660 at 1265.381 kb on + strand, within DDA3937_RS05660 at 1265.381 kb on + strand, within DDA3937_RS05660 at 1265.605 kb on + strand, within DDA3937_RS05660 at 1265.605 kb on + strand, within DDA3937_RS05660 at 1265.605 kb on + strand, within DDA3937_RS05660 at 1265.605 kb on + strand, within DDA3937_RS05660 at 1265.605 kb on + strand, within DDA3937_RS05660 at 1265.605 kb on + strand, within DDA3937_RS05660 at 1265.605 kb on + strand at 1265.605 kb on + strand, within DDA3937_RS05660 at 1265.606 kb on - strand, within DDA3937_RS05660 at 1265.606 kb on - strand, within DDA3937_RS05660 at 1265.606 kb on - strand, within DDA3937_RS05660 at 1265.606 kb on - strand, within DDA3937_RS05660 at 1265.606 kb on - strand, within DDA3937_RS05660 at 1265.606 kb on - strand, within DDA3937_RS05660 at 1265.607 kb on + strand, within DDA3937_RS05660 at 1265.607 kb on + strand, within DDA3937_RS05660 at 1265.607 kb on + strand, within DDA3937_RS05660 at 1265.607 kb on + strand, within DDA3937_RS05660 at 1265.608 kb on - strand, within DDA3937_RS05660 at 1265.608 kb on - strand, within DDA3937_RS05660 at 1265.608 kb on - strand, within DDA3937_RS05660 at 1265.608 kb on - strand, within DDA3937_RS05660 at 1265.671 kb on + strand, within DDA3937_RS05660 at 1265.675 kb on - strand, within DDA3937_RS05660 at 1265.675 kb on - strand, within DDA3937_RS05660 at 1265.685 kb on + strand, within DDA3937_RS05660 at 1265.685 kb on + strand, within DDA3937_RS05660 at 1265.685 kb on + strand, within DDA3937_RS05660 at 1265.719 kb on + strand, within DDA3937_RS05660 at 1265.719 kb on + strand, within DDA3937_RS05660 at 1265.945 kb on + strand, within DDA3937_RS05660 at 1265.950 kb on + strand, within DDA3937_RS05660 at 1265.950 kb on + strand, within DDA3937_RS05660 at 1266.061 kb on + strand, within DDA3937_RS05660 at 1266.061 kb on + strand, within DDA3937_RS05660 at 1266.062 kb on - strand, within DDA3937_RS05660 at 1266.062 kb on - strand, within DDA3937_RS05660 at 1266.302 kb on + strand, within DDA3937_RS05660 at 1266.303 kb on - strand, within DDA3937_RS05660 at 1266.755 kb on - strand at 1266.781 kb on + strand at 1266.781 kb on + strand at 1266.782 kb on - strand at 1266.947 kb on + strand at 1266.947 kb on + strand at 1266.948 kb on - strand at 1266.948 kb on - strand at 1266.948 kb on - strand at 1267.114 kb on - strand, within DDA3937_RS05665 at 1267.116 kb on + strand, within DDA3937_RS05665 at 1267.116 kb on + strand, within DDA3937_RS05665 at 1267.116 kb on + strand, within DDA3937_RS05665 at 1267.116 kb on + strand, within DDA3937_RS05665 at 1267.117 kb on - strand, within DDA3937_RS05665 at 1267.117 kb on - strand at 1267.117 kb on - strand, within DDA3937_RS05665 at 1267.117 kb on - strand, within DDA3937_RS05665 at 1267.184 kb on + strand, within DDA3937_RS05665 at 1267.185 kb on - strand, within DDA3937_RS05665 at 1267.185 kb on - strand, within DDA3937_RS05665 at 1267.192 kb on + strand, within DDA3937_RS05665 at 1267.192 kb on + strand, within DDA3937_RS05665 at 1267.192 kb on + strand, within DDA3937_RS05665 at 1267.193 kb on - strand, within DDA3937_RS05665 at 1267.193 kb on - strand, within DDA3937_RS05665 at 1267.216 kb on - strand, within DDA3937_RS05665 at 1267.272 kb on + strand at 1267.294 kb on + strand at 1267.295 kb on - strand at 1267.406 kb on - strand at 1267.461 kb on - strand at 1267.461 kb on - strand at 1267.469 kb on - strand at 1267.529 kb on + strand, within DDA3937_RS05670 at 1267.541 kb on - strand, within DDA3937_RS05670 at 1267.541 kb on - strand, within DDA3937_RS05670 at 1267.582 kb on + strand, within DDA3937_RS05670 at 1267.583 kb on - strand, within DDA3937_RS05670 at 1267.585 kb on + strand, within DDA3937_RS05670 at 1267.778 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,264,142 - +1.2 1,264,142 - +0.1 1,264,185 + +0.7 1,264,219 - +2.0 1,264,223 - -0.5 1,264,312 + -0.6 1,264,312 + -0.8 1,264,318 + -0.4 1,264,318 + -1.2 1,264,318 + +0.0 1,264,319 - +0.0 1,264,345 - +0.6 1,264,348 - +1.4 1,264,348 - -0.2 1,264,348 - +1.5 1,264,353 + +0.2 1,264,353 + -0.1 1,264,419 - DDA3937_RS05655 0.16 -1.7 1,264,458 - DDA3937_RS05655 0.31 -1.2 1,264,469 + DDA3937_RS05655 0.35 -0.7 1,264,470 - DDA3937_RS05655 0.35 -0.2 1,264,505 - DDA3937_RS05655 0.48 -0.6 1,264,517 + DDA3937_RS05655 0.52 -1.3 1,264,517 + DDA3937_RS05655 0.52 +0.2 1,264,518 - DDA3937_RS05655 0.53 +1.0 1,264,556 + DDA3937_RS05655 0.67 -1.5 1,264,556 + DDA3937_RS05655 0.67 +0.8 1,264,584 - DDA3937_RS05655 0.77 -0.1 1,264,650 + -1.9 1,264,650 + -0.1 1,264,651 - +0.4 1,264,651 - -0.1 1,264,651 - -0.5 1,264,652 + -0.1 1,264,652 + -0.2 1,264,652 + +0.0 1,264,652 + -0.5 1,264,652 + +0.9 1,264,652 + +0.6 1,264,652 + +0.9 1,264,652 + +0.4 1,264,653 - +0.9 1,264,653 - -0.4 1,264,653 - -0.1 1,264,653 - -0.5 1,264,653 - +1.4 1,264,653 - -0.7 1,264,653 - -1.0 1,264,653 - -0.4 1,264,653 - +0.5 1,264,653 - -0.0 1,264,697 + +0.8 1,264,698 - +0.6 1,264,724 - -0.1 1,264,724 - +0.2 1,264,728 + +0.0 1,264,728 + -2.1 1,264,728 + -1.4 1,264,728 + +0.4 1,264,728 + -0.7 1,264,729 - +0.1 1,264,729 - +0.2 1,264,729 - -1.5 1,264,729 - +1.8 1,264,729 - -0.9 1,264,730 + +0.6 1,264,730 + +0.6 1,264,730 + +0.2 1,264,731 - -1.1 1,264,731 - +0.2 1,264,731 - -1.0 1,264,731 - +0.6 1,264,745 + +0.1 1,264,745 + +0.2 1,264,773 - +1.6 1,264,778 + +1.6 1,264,778 + +0.6 1,264,778 + -1.5 1,264,778 + -0.1 1,264,779 - +0.3 1,264,785 - +0.1 1,264,824 + -1.4 1,264,826 + +0.2 1,264,826 + -0.1 1,264,826 + -0.8 1,264,826 + -0.5 1,264,826 + +0.4 1,264,832 + +0.8 1,264,832 + -1.3 1,264,882 - -0.3 1,264,902 + -2.8 1,264,902 + +0.6 1,264,902 + +0.8 1,264,902 + +0.2 1,264,902 + -0.6 1,264,903 - +1.6 1,264,903 - +0.9 1,264,903 - -0.1 1,265,000 - +0.1 1,265,006 + -0.3 1,265,006 + +0.0 1,265,006 + +0.3 1,265,007 - -1.7 1,265,007 - +0.5 1,265,149 + DDA3937_RS05660 0.13 -0.7 1,265,149 + DDA3937_RS05660 0.13 +0.8 1,265,149 + DDA3937_RS05660 0.13 -2.0 1,265,149 + +1.6 1,265,150 - DDA3937_RS05660 0.13 +0.1 1,265,150 - DDA3937_RS05660 0.13 +0.0 1,265,151 + DDA3937_RS05660 0.13 -0.4 1,265,151 + DDA3937_RS05660 0.13 +0.1 1,265,151 + DDA3937_RS05660 0.13 +0.1 1,265,151 + DDA3937_RS05660 0.13 -1.4 1,265,152 - DDA3937_RS05660 0.13 -2.0 1,265,152 - DDA3937_RS05660 0.13 +1.5 1,265,152 - DDA3937_RS05660 0.13 -1.6 1,265,152 - DDA3937_RS05660 0.13 +0.3 1,265,152 - DDA3937_RS05660 0.13 +0.0 1,265,212 + DDA3937_RS05660 0.16 +0.2 1,265,213 - DDA3937_RS05660 0.16 -1.2 1,265,213 - DDA3937_RS05660 0.16 +0.3 1,265,213 - DDA3937_RS05660 0.16 -0.1 1,265,310 + DDA3937_RS05660 0.22 +0.6 1,265,310 + DDA3937_RS05660 0.22 -0.4 1,265,310 + DDA3937_RS05660 0.22 -0.4 1,265,310 + DDA3937_RS05660 0.22 +0.5 1,265,310 + DDA3937_RS05660 0.22 +0.3 1,265,310 + DDA3937_RS05660 0.22 +0.3 1,265,310 + DDA3937_RS05660 0.22 -0.1 1,265,310 + DDA3937_RS05660 0.22 -1.2 1,265,311 - DDA3937_RS05660 0.22 -0.0 1,265,311 - DDA3937_RS05660 0.22 +1.3 1,265,311 - DDA3937_RS05660 0.22 +0.3 1,265,314 + DDA3937_RS05660 0.22 +0.8 1,265,314 + DDA3937_RS05660 0.22 +0.4 1,265,315 - DDA3937_RS05660 0.22 -0.5 1,265,381 + DDA3937_RS05660 0.25 -0.4 1,265,381 + DDA3937_RS05660 0.25 +0.3 1,265,381 + DDA3937_RS05660 0.25 +0.4 1,265,381 + DDA3937_RS05660 0.25 +1.4 1,265,381 + DDA3937_RS05660 0.25 +0.8 1,265,605 + DDA3937_RS05660 0.37 +0.8 1,265,605 + DDA3937_RS05660 0.37 -0.5 1,265,605 + DDA3937_RS05660 0.37 +0.2 1,265,605 + DDA3937_RS05660 0.37 +0.0 1,265,605 + DDA3937_RS05660 0.37 +1.4 1,265,605 + DDA3937_RS05660 0.37 +0.6 1,265,605 + +1.4 1,265,605 + DDA3937_RS05660 0.37 +1.0 1,265,606 - DDA3937_RS05660 0.37 -0.0 1,265,606 - DDA3937_RS05660 0.37 +0.9 1,265,606 - DDA3937_RS05660 0.37 +0.6 1,265,606 - DDA3937_RS05660 0.37 +0.6 1,265,606 - DDA3937_RS05660 0.37 +0.5 1,265,606 - DDA3937_RS05660 0.37 +0.4 1,265,607 + DDA3937_RS05660 0.37 -0.4 1,265,607 + DDA3937_RS05660 0.37 +0.3 1,265,607 + DDA3937_RS05660 0.37 +0.2 1,265,607 + DDA3937_RS05660 0.37 +0.2 1,265,608 - DDA3937_RS05660 0.37 +0.6 1,265,608 - DDA3937_RS05660 0.37 +0.4 1,265,608 - DDA3937_RS05660 0.37 -0.6 1,265,608 - DDA3937_RS05660 0.37 -0.1 1,265,671 + DDA3937_RS05660 0.41 +1.0 1,265,675 - DDA3937_RS05660 0.41 +0.4 1,265,675 - DDA3937_RS05660 0.41 +0.4 1,265,685 + DDA3937_RS05660 0.42 +1.0 1,265,685 + DDA3937_RS05660 0.42 +0.5 1,265,685 + DDA3937_RS05660 0.42 -0.4 1,265,719 + DDA3937_RS05660 0.43 +0.9 1,265,719 + DDA3937_RS05660 0.43 +0.1 1,265,945 + DDA3937_RS05660 0.55 -0.1 1,265,950 + DDA3937_RS05660 0.56 +0.6 1,265,950 + DDA3937_RS05660 0.56 -1.7 1,266,061 + DDA3937_RS05660 0.62 +1.4 1,266,061 + DDA3937_RS05660 0.62 +0.0 1,266,062 - DDA3937_RS05660 0.62 +1.5 1,266,062 - DDA3937_RS05660 0.62 +0.1 1,266,302 + DDA3937_RS05660 0.74 +0.4 1,266,303 - DDA3937_RS05660 0.74 -0.4 1,266,755 - -0.2 1,266,781 + +0.8 1,266,781 + -0.3 1,266,782 - -1.5 1,266,947 + -0.4 1,266,947 + +0.3 1,266,948 - -0.2 1,266,948 - -0.9 1,266,948 - -0.4 1,267,114 - DDA3937_RS05665 0.51 +0.4 1,267,116 + DDA3937_RS05665 0.52 +0.7 1,267,116 + DDA3937_RS05665 0.52 +0.2 1,267,116 + DDA3937_RS05665 0.52 -0.4 1,267,116 + DDA3937_RS05665 0.52 -0.5 1,267,117 - DDA3937_RS05665 0.52 -0.7 1,267,117 - +0.6 1,267,117 - DDA3937_RS05665 0.52 +0.0 1,267,117 - DDA3937_RS05665 0.52 -0.4 1,267,184 + DDA3937_RS05665 0.70 -0.8 1,267,185 - DDA3937_RS05665 0.70 -1.3 1,267,185 - DDA3937_RS05665 0.70 -0.5 1,267,192 + DDA3937_RS05665 0.72 +0.7 1,267,192 + DDA3937_RS05665 0.72 +0.1 1,267,192 + DDA3937_RS05665 0.72 +0.6 1,267,193 - DDA3937_RS05665 0.72 -0.6 1,267,193 - DDA3937_RS05665 0.72 -0.8 1,267,216 - DDA3937_RS05665 0.78 -0.2 1,267,272 + -1.2 1,267,294 + -0.4 1,267,295 - -0.3 1,267,406 - -0.5 1,267,461 - -1.0 1,267,461 - +0.1 1,267,469 - -1.0 1,267,529 + DDA3937_RS05670 0.17 -1.0 1,267,541 - DDA3937_RS05670 0.19 +0.2 1,267,541 - DDA3937_RS05670 0.19 +1.5 1,267,582 + DDA3937_RS05670 0.25 +0.0 1,267,583 - DDA3937_RS05670 0.25 -0.4 1,267,585 + DDA3937_RS05670 0.25 -1.0 1,267,778 - +0.6
Or see this region's nucleotide sequence