Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05450

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS05445 and DDA3937_RS05450 are separated by 98 nucleotidesDDA3937_RS05450 and DDA3937_RS05455 are separated by 85 nucleotidesDDA3937_RS05455 and DDA3937_RS05460 are separated by 178 nucleotides DDA3937_RS05445: DDA3937_RS05445 - branched-chain amino acid transport system II carrier protein, at 1,217,199 to 1,218,518 _RS05445 DDA3937_RS05450: DDA3937_RS05450 - proline-specific permease ProY, at 1,218,617 to 1,219,969 _RS05450 DDA3937_RS05455: DDA3937_RS05455 - peroxiredoxin C, at 1,220,055 to 1,220,657 _RS05455 DDA3937_RS05460: DDA3937_RS05460 - DUF479 domain-containing protein, at 1,220,836 to 1,221,441 _RS05460 Position (kb) 1218 1219 1220Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1217.645 kb on + strand, within DDA3937_RS05445at 1217.740 kb on - strand, within DDA3937_RS05445at 1217.925 kb on + strand, within DDA3937_RS05445at 1217.926 kb on - strand, within DDA3937_RS05445at 1217.926 kb on - strandat 1218.006 kb on + strand, within DDA3937_RS05445at 1218.006 kb on + strand, within DDA3937_RS05445at 1218.006 kb on + strand, within DDA3937_RS05445at 1218.006 kb on + strand, within DDA3937_RS05445at 1218.006 kb on + strand, within DDA3937_RS05445at 1218.007 kb on - strand, within DDA3937_RS05445at 1218.007 kb on - strand, within DDA3937_RS05445at 1218.007 kb on - strand, within DDA3937_RS05445at 1218.007 kb on - strand, within DDA3937_RS05445at 1218.015 kb on + strand, within DDA3937_RS05445at 1218.015 kb on + strand, within DDA3937_RS05445at 1218.016 kb on - strand, within DDA3937_RS05445at 1218.016 kb on - strand, within DDA3937_RS05445at 1218.016 kb on - strand, within DDA3937_RS05445at 1218.016 kb on - strand, within DDA3937_RS05445at 1218.038 kb on + strand, within DDA3937_RS05445at 1218.039 kb on - strand, within DDA3937_RS05445at 1218.039 kb on - strand, within DDA3937_RS05445at 1218.039 kb on - strand, within DDA3937_RS05445at 1218.071 kb on + strand, within DDA3937_RS05445at 1218.072 kb on - strand, within DDA3937_RS05445at 1218.072 kb on - strand, within DDA3937_RS05445at 1218.123 kb on + strand, within DDA3937_RS05445at 1218.123 kb on + strand, within DDA3937_RS05445at 1218.124 kb on - strand, within DDA3937_RS05445at 1218.138 kb on + strand, within DDA3937_RS05445at 1218.139 kb on - strand, within DDA3937_RS05445at 1218.139 kb on - strand, within DDA3937_RS05445at 1218.174 kb on - strand, within DDA3937_RS05445at 1218.174 kb on - strand, within DDA3937_RS05445at 1218.474 kb on + strandat 1218.474 kb on + strandat 1218.474 kb on + strandat 1218.474 kb on + strandat 1218.474 kb on + strandat 1218.474 kb on + strandat 1218.474 kb on + strandat 1218.475 kb on - strandat 1218.595 kb on + strandat 1218.595 kb on + strandat 1218.596 kb on - strandat 1218.617 kb on - strandat 1218.638 kb on - strandat 1218.653 kb on - strandat 1218.707 kb on + strandat 1218.707 kb on + strandat 1218.708 kb on - strandat 1218.708 kb on - strandat 1218.708 kb on - strandat 1218.758 kb on + strand, within DDA3937_RS05450at 1218.782 kb on + strand, within DDA3937_RS05450at 1218.782 kb on + strand, within DDA3937_RS05450at 1218.784 kb on + strand, within DDA3937_RS05450at 1218.784 kb on + strand, within DDA3937_RS05450at 1218.784 kb on + strand, within DDA3937_RS05450at 1218.784 kb on + strand, within DDA3937_RS05450at 1218.784 kb on + strand, within DDA3937_RS05450at 1218.784 kb on + strand, within DDA3937_RS05450at 1218.785 kb on - strand, within DDA3937_RS05450at 1218.785 kb on - strand, within DDA3937_RS05450at 1218.785 kb on - strand, within DDA3937_RS05450at 1218.785 kb on - strand, within DDA3937_RS05450at 1218.785 kb on - strand, within DDA3937_RS05450at 1218.785 kb on - strand, within DDA3937_RS05450at 1218.790 kb on + strand, within DDA3937_RS05450at 1218.861 kb on - strand, within DDA3937_RS05450at 1218.881 kb on + strand, within DDA3937_RS05450at 1218.882 kb on - strand, within DDA3937_RS05450at 1218.899 kb on + strand, within DDA3937_RS05450at 1218.899 kb on + strand, within DDA3937_RS05450at 1218.900 kb on - strand, within DDA3937_RS05450at 1218.900 kb on - strand, within DDA3937_RS05450at 1218.953 kb on + strand, within DDA3937_RS05450at 1218.953 kb on + strand, within DDA3937_RS05450at 1218.953 kb on + strand, within DDA3937_RS05450at 1218.953 kb on + strand, within DDA3937_RS05450at 1218.953 kb on + strand, within DDA3937_RS05450at 1218.953 kb on + strand, within DDA3937_RS05450at 1218.954 kb on - strand, within DDA3937_RS05450at 1218.954 kb on - strand, within DDA3937_RS05450at 1218.954 kb on - strand, within DDA3937_RS05450at 1218.954 kb on - strand, within DDA3937_RS05450at 1218.954 kb on - strand, within DDA3937_RS05450at 1218.954 kb on - strand, within DDA3937_RS05450at 1218.954 kb on - strand, within DDA3937_RS05450at 1218.954 kb on - strand, within DDA3937_RS05450at 1218.954 kb on - strand, within DDA3937_RS05450at 1218.954 kb on - strand, within DDA3937_RS05450at 1218.954 kb on - strand, within DDA3937_RS05450at 1218.955 kb on + strand, within DDA3937_RS05450at 1218.955 kb on + strand, within DDA3937_RS05450at 1218.955 kb on + strand, within DDA3937_RS05450at 1218.956 kb on - strand, within DDA3937_RS05450at 1218.956 kb on - strand, within DDA3937_RS05450at 1218.963 kb on + strand, within DDA3937_RS05450at 1218.963 kb on + strand, within DDA3937_RS05450at 1218.964 kb on - strand, within DDA3937_RS05450at 1219.047 kb on + strand, within DDA3937_RS05450at 1219.048 kb on - strand, within DDA3937_RS05450at 1219.171 kb on + strand, within DDA3937_RS05450at 1219.171 kb on + strand, within DDA3937_RS05450at 1219.172 kb on - strand, within DDA3937_RS05450at 1219.172 kb on - strand, within DDA3937_RS05450at 1219.172 kb on - strand, within DDA3937_RS05450at 1219.172 kb on - strand, within DDA3937_RS05450at 1219.291 kb on + strand, within DDA3937_RS05450at 1219.292 kb on - strand, within DDA3937_RS05450at 1219.342 kb on + strand, within DDA3937_RS05450at 1219.342 kb on + strand, within DDA3937_RS05450at 1219.355 kb on + strand, within DDA3937_RS05450at 1219.355 kb on + strand, within DDA3937_RS05450at 1219.355 kb on + strand, within DDA3937_RS05450at 1219.355 kb on + strand, within DDA3937_RS05450at 1219.355 kb on + strand, within DDA3937_RS05450at 1219.355 kb on + strand, within DDA3937_RS05450at 1219.356 kb on - strand, within DDA3937_RS05450at 1219.356 kb on - strand, within DDA3937_RS05450at 1219.356 kb on - strand, within DDA3937_RS05450at 1219.356 kb on - strand, within DDA3937_RS05450at 1219.411 kb on + strand, within DDA3937_RS05450at 1219.412 kb on - strand, within DDA3937_RS05450at 1219.444 kb on + strand, within DDA3937_RS05450at 1219.444 kb on + strandat 1219.444 kb on + strand, within DDA3937_RS05450at 1219.444 kb on + strand, within DDA3937_RS05450at 1219.538 kb on - strand, within DDA3937_RS05450at 1219.616 kb on - strand, within DDA3937_RS05450at 1219.655 kb on + strand, within DDA3937_RS05450at 1219.656 kb on - strand, within DDA3937_RS05450at 1219.664 kb on + strand, within DDA3937_RS05450at 1219.664 kb on + strandat 1219.664 kb on + strand, within DDA3937_RS05450at 1219.664 kb on + strand, within DDA3937_RS05450at 1219.665 kb on - strand, within DDA3937_RS05450at 1219.665 kb on - strand, within DDA3937_RS05450at 1219.665 kb on - strand, within DDA3937_RS05450at 1219.722 kb on + strand, within DDA3937_RS05450at 1219.722 kb on + strand, within DDA3937_RS05450at 1219.723 kb on - strand, within DDA3937_RS05450at 1219.723 kb on - strand, within DDA3937_RS05450at 1219.723 kb on - strand, within DDA3937_RS05450at 1219.904 kb on + strandat 1219.905 kb on - strandat 1220.003 kb on + strandat 1220.189 kb on + strand, within DDA3937_RS05455at 1220.646 kb on + strandat 1220.657 kb on + strandat 1220.657 kb on + strandat 1220.661 kb on + strandat 1220.661 kb on + strandat 1220.661 kb on + strandat 1220.662 kb on - strandat 1220.669 kb on + strandat 1220.674 kb on - strandat 1220.674 kb on - strandat 1220.687 kb on - strandat 1220.709 kb on - strandat 1220.713 kb on - strandat 1220.714 kb on + strandat 1220.714 kb on + strandat 1220.714 kb on + strandat 1220.714 kb on + strandat 1220.714 kb on + strandat 1220.715 kb on - strandat 1220.715 kb on - strandat 1220.715 kb on - strandat 1220.715 kb on - strandat 1220.718 kb on + strandat 1220.719 kb on - strandat 1220.719 kb on - strandat 1220.719 kb on - strandat 1220.735 kb on + strandat 1220.762 kb on + strandat 1220.837 kb on + strandat 1220.837 kb on + strandat 1220.837 kb on + strandat 1220.892 kb on + strandat 1220.892 kb on + strandat 1220.892 kb on + strandat 1220.892 kb on + strandat 1220.892 kb on + strandat 1220.893 kb on - strandat 1220.900 kb on + strand, within DDA3937_RS05460at 1220.900 kb on + strand, within DDA3937_RS05460at 1220.901 kb on - strand, within DDA3937_RS05460at 1220.914 kb on + strand, within DDA3937_RS05460at 1220.915 kb on - strand, within DDA3937_RS05460at 1220.934 kb on - strand, within DDA3937_RS05460at 1220.934 kb on - strand, within DDA3937_RS05460at 1220.934 kb on - strand, within DDA3937_RS05460at 1220.934 kb on - strand, within DDA3937_RS05460

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
1,217,645 + DDA3937_RS05445 0.34 -0.5
1,217,740 - DDA3937_RS05445 0.41 -0.7
1,217,925 + DDA3937_RS05445 0.55 -0.0
1,217,926 - DDA3937_RS05445 0.55 -0.5
1,217,926 - +0.1
1,218,006 + DDA3937_RS05445 0.61 -3.0
1,218,006 + DDA3937_RS05445 0.61 +0.2
1,218,006 + DDA3937_RS05445 0.61 -0.4
1,218,006 + DDA3937_RS05445 0.61 +1.1
1,218,006 + DDA3937_RS05445 0.61 -0.1
1,218,007 - DDA3937_RS05445 0.61 -1.0
1,218,007 - DDA3937_RS05445 0.61 -0.6
1,218,007 - DDA3937_RS05445 0.61 +0.7
1,218,007 - DDA3937_RS05445 0.61 -0.1
1,218,015 + DDA3937_RS05445 0.62 +0.0
1,218,015 + DDA3937_RS05445 0.62 +0.7
1,218,016 - DDA3937_RS05445 0.62 +0.3
1,218,016 - DDA3937_RS05445 0.62 +0.2
1,218,016 - DDA3937_RS05445 0.62 -0.9
1,218,016 - DDA3937_RS05445 0.62 -0.1
1,218,038 + DDA3937_RS05445 0.64 +0.4
1,218,039 - DDA3937_RS05445 0.64 -1.2
1,218,039 - DDA3937_RS05445 0.64 -1.0
1,218,039 - DDA3937_RS05445 0.64 +0.9
1,218,071 + DDA3937_RS05445 0.66 -1.3
1,218,072 - DDA3937_RS05445 0.66 -0.3
1,218,072 - DDA3937_RS05445 0.66 -0.2
1,218,123 + DDA3937_RS05445 0.70 -1.1
1,218,123 + DDA3937_RS05445 0.70 -2.3
1,218,124 - DDA3937_RS05445 0.70 -0.4
1,218,138 + DDA3937_RS05445 0.71 -0.0
1,218,139 - DDA3937_RS05445 0.71 -1.7
1,218,139 - DDA3937_RS05445 0.71 -0.3
1,218,174 - DDA3937_RS05445 0.74 -0.8
1,218,174 - DDA3937_RS05445 0.74 -0.2
1,218,474 + -0.8
1,218,474 + +0.7
1,218,474 + -0.1
1,218,474 + -0.8
1,218,474 + -0.3
1,218,474 + -2.1
1,218,474 + -0.9
1,218,475 - -1.7
1,218,595 + -0.2
1,218,595 + -0.5
1,218,596 - +0.6
1,218,617 - +0.2
1,218,638 - -0.3
1,218,653 - -0.7
1,218,707 + +2.1
1,218,707 + -0.3
1,218,708 - -0.8
1,218,708 - +0.2
1,218,708 - -1.9
1,218,758 + DDA3937_RS05450 0.10 -0.8
1,218,782 + DDA3937_RS05450 0.12 -0.7
1,218,782 + DDA3937_RS05450 0.12 -0.5
1,218,784 + DDA3937_RS05450 0.12 +2.0
1,218,784 + DDA3937_RS05450 0.12 -1.8
1,218,784 + DDA3937_RS05450 0.12 -0.6
1,218,784 + DDA3937_RS05450 0.12 -0.4
1,218,784 + DDA3937_RS05450 0.12 -0.5
1,218,784 + DDA3937_RS05450 0.12 +0.2
1,218,785 - DDA3937_RS05450 0.12 -0.2
1,218,785 - DDA3937_RS05450 0.12 -0.4
1,218,785 - DDA3937_RS05450 0.12 +0.2
1,218,785 - DDA3937_RS05450 0.12 +0.2
1,218,785 - DDA3937_RS05450 0.12 -0.3
1,218,785 - DDA3937_RS05450 0.12 -2.3
1,218,790 + DDA3937_RS05450 0.13 -0.6
1,218,861 - DDA3937_RS05450 0.18 +0.1
1,218,881 + DDA3937_RS05450 0.20 -1.3
1,218,882 - DDA3937_RS05450 0.20 +0.8
1,218,899 + DDA3937_RS05450 0.21 -1.3
1,218,899 + DDA3937_RS05450 0.21 -1.1
1,218,900 - DDA3937_RS05450 0.21 +0.1
1,218,900 - DDA3937_RS05450 0.21 -0.0
1,218,953 + DDA3937_RS05450 0.25 -0.7
1,218,953 + DDA3937_RS05450 0.25 +0.5
1,218,953 + DDA3937_RS05450 0.25 +0.4
1,218,953 + DDA3937_RS05450 0.25 -0.2
1,218,953 + DDA3937_RS05450 0.25 +0.1
1,218,953 + DDA3937_RS05450 0.25 -0.3
1,218,954 - DDA3937_RS05450 0.25 -0.2
1,218,954 - DDA3937_RS05450 0.25 -0.3
1,218,954 - DDA3937_RS05450 0.25 +0.1
1,218,954 - DDA3937_RS05450 0.25 +0.3
1,218,954 - DDA3937_RS05450 0.25 -1.5
1,218,954 - DDA3937_RS05450 0.25 -0.4
1,218,954 - DDA3937_RS05450 0.25 -0.8
1,218,954 - DDA3937_RS05450 0.25 -0.1
1,218,954 - DDA3937_RS05450 0.25 -0.8
1,218,954 - DDA3937_RS05450 0.25 +0.5
1,218,954 - DDA3937_RS05450 0.25 -1.3
1,218,955 + DDA3937_RS05450 0.25 -0.3
1,218,955 + DDA3937_RS05450 0.25 -0.1
1,218,955 + DDA3937_RS05450 0.25 +0.2
1,218,956 - DDA3937_RS05450 0.25 -1.0
1,218,956 - DDA3937_RS05450 0.25 +0.7
1,218,963 + DDA3937_RS05450 0.26 -0.9
1,218,963 + DDA3937_RS05450 0.26 +0.9
1,218,964 - DDA3937_RS05450 0.26 -1.0
1,219,047 + DDA3937_RS05450 0.32 -0.5
1,219,048 - DDA3937_RS05450 0.32 +0.2
1,219,171 + DDA3937_RS05450 0.41 -0.4
1,219,171 + DDA3937_RS05450 0.41 +0.4
1,219,172 - DDA3937_RS05450 0.41 -0.0
1,219,172 - DDA3937_RS05450 0.41 -0.9
1,219,172 - DDA3937_RS05450 0.41 -0.3
1,219,172 - DDA3937_RS05450 0.41 -0.9
1,219,291 + DDA3937_RS05450 0.50 +0.7
1,219,292 - DDA3937_RS05450 0.50 -0.1
1,219,342 + DDA3937_RS05450 0.54 -1.8
1,219,342 + DDA3937_RS05450 0.54 -0.6
1,219,355 + DDA3937_RS05450 0.55 -0.3
1,219,355 + DDA3937_RS05450 0.55 +0.3
1,219,355 + DDA3937_RS05450 0.55 -1.1
1,219,355 + DDA3937_RS05450 0.55 -0.1
1,219,355 + DDA3937_RS05450 0.55 -0.1
1,219,355 + DDA3937_RS05450 0.55 +0.1
1,219,356 - DDA3937_RS05450 0.55 +0.4
1,219,356 - DDA3937_RS05450 0.55 -0.9
1,219,356 - DDA3937_RS05450 0.55 +0.5
1,219,356 - DDA3937_RS05450 0.55 -1.1
1,219,411 + DDA3937_RS05450 0.59 -0.7
1,219,412 - DDA3937_RS05450 0.59 -0.4
1,219,444 + DDA3937_RS05450 0.61 -0.9
1,219,444 + +1.7
1,219,444 + DDA3937_RS05450 0.61 -0.0
1,219,444 + DDA3937_RS05450 0.61 +0.2
1,219,538 - DDA3937_RS05450 0.68 +0.0
1,219,616 - DDA3937_RS05450 0.74 -0.1
1,219,655 + DDA3937_RS05450 0.77 -0.2
1,219,656 - DDA3937_RS05450 0.77 -0.2
1,219,664 + DDA3937_RS05450 0.77 -0.3
1,219,664 + +1.7
1,219,664 + DDA3937_RS05450 0.77 -0.6
1,219,664 + DDA3937_RS05450 0.77 -1.0
1,219,665 - DDA3937_RS05450 0.77 +0.6
1,219,665 - DDA3937_RS05450 0.77 +0.4
1,219,665 - DDA3937_RS05450 0.77 -0.7
1,219,722 + DDA3937_RS05450 0.82 -0.1
1,219,722 + DDA3937_RS05450 0.82 +0.0
1,219,723 - DDA3937_RS05450 0.82 +0.2
1,219,723 - DDA3937_RS05450 0.82 -0.2
1,219,723 - DDA3937_RS05450 0.82 -0.6
1,219,904 + +0.0
1,219,905 - -1.2
1,220,003 + +0.3
1,220,189 + DDA3937_RS05455 0.22 -0.9
1,220,646 + -0.9
1,220,657 + +0.2
1,220,657 + -0.4
1,220,661 + -1.5
1,220,661 + +1.0
1,220,661 + +0.1
1,220,662 - +1.1
1,220,669 + -0.3
1,220,674 - -1.7
1,220,674 - +0.3
1,220,687 - -1.5
1,220,709 - -1.7
1,220,713 - +0.0
1,220,714 + -0.9
1,220,714 + -0.3
1,220,714 + -0.9
1,220,714 + +0.8
1,220,714 + -1.8
1,220,715 - +1.1
1,220,715 - -1.3
1,220,715 - +0.0
1,220,715 - -0.8
1,220,718 + -1.7
1,220,719 - +2.7
1,220,719 - +0.5
1,220,719 - +0.8
1,220,735 + +1.5
1,220,762 + -0.5
1,220,837 + -0.0
1,220,837 + +0.2
1,220,837 + +0.1
1,220,892 + +0.7
1,220,892 + +0.7
1,220,892 + -0.7
1,220,892 + -0.1
1,220,892 + -0.4
1,220,893 - +0.0
1,220,900 + DDA3937_RS05460 0.11 -1.9
1,220,900 + DDA3937_RS05460 0.11 +0.4
1,220,901 - DDA3937_RS05460 0.11 +1.2
1,220,914 + DDA3937_RS05460 0.13 +0.8
1,220,915 - DDA3937_RS05460 0.13 +1.0
1,220,934 - DDA3937_RS05460 0.16 -0.4
1,220,934 - DDA3937_RS05460 0.16 +1.5
1,220,934 - DDA3937_RS05460 0.16 -0.5
1,220,934 - DDA3937_RS05460 0.16 -0.8

Or see this region's nucleotide sequence