Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05040

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,125,901	+		DDA3937_RS05030	0.40	-0.8
1,125,901	+		DDA3937_RS05030	0.40	-0.2
1,125,902	-		DDA3937_RS05030	0.40	+1.7
1,126,082	-		DDA3937_RS05030	0.62	-0.6
1,126,082	-		DDA3937_RS05030	0.62	+0.3
1,126,132	+		DDA3937_RS05030	0.68	-1.1
1,126,132	+		DDA3937_RS05030	0.68	+0.0
1,126,132	+		DDA3937_RS05030	0.68	+1.3
1,126,142	-		DDA3937_RS05030	0.69	-0.6
1,126,200	-		DDA3937_RS05030	0.76	-0.8
1,126,200	-		DDA3937_RS05030	0.76	-1.9
1,126,200	-		DDA3937_RS05030	0.76	-1.7
1,126,235	-		DDA3937_RS05030	0.80	-2.1
1,126,251	+		DDA3937_RS05030	0.82	+0.4
1,126,258	+		DDA3937_RS05030	0.83	+1.0
1,126,258	+		DDA3937_RS05030	0.83	-0.9
1,126,258	+		DDA3937_RS05030	0.83	-0.1
1,126,259	-		DDA3937_RS05030	0.83	+1.7
1,126,259	-		DDA3937_RS05030	0.83	-1.4
1,126,490	-		DDA3937_RS05035	0.23	-0.5
1,126,537	+		DDA3937_RS05035	0.34	-0.4
1,126,537	+				+0.7
1,126,538	-		DDA3937_RS05035	0.34	-0.8
1,126,719	+		DDA3937_RS05035	0.75	-2.6
1,126,720	-		DDA3937_RS05035	0.75	-1.5
1,126,847	-				+0.7
1,126,904	+				-0.0
1,126,904	+				-0.1
1,126,904	+				+2.5
1,126,905	-				-0.7
1,126,905	-				-1.9
1,127,139	+		DDA3937_RS05040	0.25	-0.3
1,127,139	+		DDA3937_RS05040	0.25	-1.0
1,127,140	-		DDA3937_RS05040	0.25	-0.7
1,127,140	-		DDA3937_RS05040	0.25	-1.1
1,127,355	+		DDA3937_RS05040	0.43	-1.9
1,127,369	+		DDA3937_RS05040	0.44	-0.9
1,127,369	+		DDA3937_RS05040	0.44	-0.7
1,127,370	-		DDA3937_RS05040	0.44	-0.5
1,127,370	-		DDA3937_RS05040	0.44	-0.6
1,127,393	+		DDA3937_RS05040	0.46	+0.4
1,127,393	+		DDA3937_RS05040	0.46	-1.4
1,127,393	+		DDA3937_RS05040	0.46	+0.0
1,127,393	+		DDA3937_RS05040	0.46	-0.5
1,127,490	+		DDA3937_RS05040	0.54	-0.3
1,127,722	+				+0.7
1,127,723	-		DDA3937_RS05040	0.74	-0.2
1,127,723	-		DDA3937_RS05040	0.74	+0.0
1,127,912	+		DDA3937_RS05040	0.89	-0.9
1,127,912	+		DDA3937_RS05040	0.89	-0.3
1,127,913	-		DDA3937_RS05040	0.89	-0.8
1,127,913	-		DDA3937_RS05040	0.89	+0.5
1,127,915	+				-0.3
1,127,915	+		DDA3937_RS05040	0.90	+1.4
1,127,915	+		DDA3937_RS05040	0.90	-1.1
1,127,916	-		DDA3937_RS05040	0.90	+0.7
1,127,916	-				-0.3
1,127,975	+				-0.4
1,128,095	+				+0.2
1,128,169	+				-1.0
1,128,170	-				-0.5
1,128,210	+				-0.5
1,128,231	+				+0.5
1,128,280	+		DDA3937_RS05045	0.31	-0.7
1,128,280	+		DDA3937_RS05045	0.31	+0.2
1,128,280	+		DDA3937_RS05045	0.31	-1.9
1,128,281	-		DDA3937_RS05045	0.32	+0.3
1,128,281	-		DDA3937_RS05045	0.32	+0.7
1,128,362	-		DDA3937_RS05045	0.68	-0.2
1,128,373	+		DDA3937_RS05045	0.73	+0.6
1,128,373	+		DDA3937_RS05045	0.73	-1.3
1,128,374	-		DDA3937_RS05045	0.73	-0.3
1,128,394	-		DDA3937_RS05045	0.82	+1.0
1,128,451	+				+0.0
1,128,451	+				+0.9
1,128,452	-				-0.6
1,128,452	-				-0.9
1,128,492	-				-0.0
1,128,526	-				-0.9
1,128,542	-				+1.0
1,128,542	-				-2.3
1,128,574	-				+1.5
1,128,582	-				-0.6
1,128,668	+				-0.3
1,128,668	+				+0.4
1,128,668	+				-1.4
1,128,669	-				+1.0
1,128,669	-				-0.0
1,128,670	+				+0.8
1,128,670	+				+0.5
1,128,671	-				+0.4
1,128,671	-				+0.8
1,128,671	-				+0.1
1,128,671	-				+0.7
1,128,671	-				+0.1
1,128,674	+				-0.3
1,128,674	+				-1.5
1,128,674	+				+0.1
1,128,675	-				-0.1
1,128,675	-				+1.3
1,128,704	+				-0.9
1,128,705	-				-0.9
1,128,706	+				-1.3
1,128,744	+				-0.4
1,128,751	+				+1.3
1,128,768	+				+0.3
1,128,769	-				+0.2
1,128,784	+				+0.7
1,128,873	+				+0.7
1,128,874	-				-0.7
1,129,003	+		DDA3937_RS05050	0.24	+1.0