Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04580

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,010,839	+				+0.7
1,010,839	+		DDA3937_RS04575	0.43	+0.7
1,010,839	+		DDA3937_RS04575	0.43	+1.0
1,010,840	-		DDA3937_RS04575	0.43	-0.5
1,010,908	+		DDA3937_RS04575	0.48	+1.1
1,010,908	+		DDA3937_RS04575	0.48	-0.5
1,010,909	-		DDA3937_RS04575	0.48	+0.9
1,010,909	-		DDA3937_RS04575	0.48	-1.4
1,010,909	-		DDA3937_RS04575	0.48	-0.5
1,010,909	-		DDA3937_RS04575	0.48	-1.7
1,010,909	-		DDA3937_RS04575	0.48	-0.1
1,010,939	+		DDA3937_RS04575	0.51	-0.2
1,011,155	+		DDA3937_RS04575	0.66	-0.4
1,011,155	+		DDA3937_RS04575	0.66	+0.1
1,011,170	+		DDA3937_RS04575	0.67	-0.3
1,011,171	-		DDA3937_RS04575	0.67	+0.2
1,011,218	+		DDA3937_RS04575	0.71	+1.9
1,011,218	+		DDA3937_RS04575	0.71	-0.7
1,011,218	+		DDA3937_RS04575	0.71	+0.1
1,011,219	-		DDA3937_RS04575	0.71	+0.4
1,011,219	-		DDA3937_RS04575	0.71	-0.4
1,011,472	+		DDA3937_RS04575	0.89	+0.4
1,011,473	-		DDA3937_RS04575	0.89	-0.1
1,011,473	-		DDA3937_RS04575	0.89	+0.1
1,011,473	-		DDA3937_RS04575	0.89	+0.4
1,011,544	+				-1.6
1,011,544	+				+0.6
1,011,544	+				+0.4
1,011,544	+				-0.2
1,011,544	+				-1.3
1,011,544	+				-0.6
1,011,544	+				+0.7
1,011,545	-				+0.1
1,011,545	-				-0.3
1,011,545	-				-0.4
1,011,545	-				-1.4
1,011,545	-				-1.6
1,011,545	-				+0.3
1,011,545	-				-0.5
1,011,630	-				-0.1
1,011,648	+				-0.5
1,011,649	-				-0.5
1,011,649	-				+0.0
1,011,674	+				-0.1
1,011,781	+		DDA3937_RS04580	0.17	-1.7
1,011,785	-		DDA3937_RS04580	0.17	+0.1
1,012,048	+		DDA3937_RS04580	0.44	+0.5
1,012,095	+		DDA3937_RS04580	0.49	-0.5
1,012,096	-		DDA3937_RS04580	0.49	-0.9
1,012,145	+		DDA3937_RS04580	0.55	+0.6
1,012,145	+		DDA3937_RS04580	0.55	-0.3
1,012,145	+		DDA3937_RS04580	0.55	-0.2
1,012,145	+		DDA3937_RS04580	0.55	+0.2
1,012,145	+		DDA3937_RS04580	0.55	-0.0
1,012,146	-		DDA3937_RS04580	0.55	-0.3
1,012,240	-		DDA3937_RS04580	0.64	-0.7
1,012,240	-		DDA3937_RS04580	0.64	-0.2
1,012,275	+		DDA3937_RS04580	0.68	+1.9
1,012,275	+		DDA3937_RS04580	0.68	-0.2
1,012,275	+		DDA3937_RS04580	0.68	+0.7
1,012,276	-		DDA3937_RS04580	0.68	+1.0
1,012,276	-		DDA3937_RS04580	0.68	-0.5
1,012,292	+		DDA3937_RS04580	0.70	+1.3
1,012,293	-		DDA3937_RS04580	0.70	+0.2
1,012,323	+		DDA3937_RS04580	0.73	+0.5
1,012,323	+		DDA3937_RS04580	0.73	-1.3
1,012,323	+		DDA3937_RS04580	0.73	+0.4
1,012,324	-		DDA3937_RS04580	0.73	+1.5
1,012,324	-		DDA3937_RS04580	0.73	+0.4
1,012,324	-		DDA3937_RS04580	0.73	-0.3
1,012,339	-		DDA3937_RS04580	0.75	+1.7
1,012,391	+		DDA3937_RS04580	0.80	-0.4
1,012,391	+		DDA3937_RS04580	0.80	-0.3
1,012,392	-		DDA3937_RS04580	0.80	-0.6
1,012,392	-		DDA3937_RS04580	0.80	+0.3
1,012,488	-				+0.7
1,012,488	-				-0.0
1,012,524	+				-0.0
1,012,525	-				-0.9
1,012,594	+				-2.9
1,012,595	-				-0.3
1,012,636	+				-0.2
1,012,637	-				-0.2
1,012,652	-		DDA3937_RS04585	0.11	+0.2
1,012,796	+		DDA3937_RS04585	0.32	+1.7
1,012,797	-		DDA3937_RS04585	0.32	+0.5
1,013,004	-		DDA3937_RS04585	0.62	+0.1
1,013,004	-		DDA3937_RS04585	0.62	-1.4
1,013,037	+		DDA3937_RS04585	0.67	-0.2
1,013,037	+		DDA3937_RS04585	0.67	+0.0
1,013,037	+		DDA3937_RS04585	0.67	+0.3
1,013,037	+		DDA3937_RS04585	0.67	+0.7
1,013,037	+		DDA3937_RS04585	0.67	-1.0
1,013,038	-		DDA3937_RS04585	0.67	-0.9
1,013,038	-		DDA3937_RS04585	0.67	+1.5
1,013,038	-		DDA3937_RS04585	0.67	-0.1
1,013,038	-		DDA3937_RS04585	0.67	+0.1
1,013,038	-		DDA3937_RS04585	0.67	-0.3
1,013,038	-		DDA3937_RS04585	0.67	-0.2
1,013,115	-		DDA3937_RS04585	0.78	-0.5
1,013,122	-		DDA3937_RS04585	0.79	-0.4
1,013,122	-		DDA3937_RS04585	0.79	-0.3
1,013,136	+		DDA3937_RS04585	0.81	-0.1
1,013,137	-		DDA3937_RS04585	0.81	+0.1
1,013,144	-		DDA3937_RS04585	0.82	-0.3
1,013,243	+				-0.9
1,013,244	-				-0.5
1,013,276	-				-0.3
1,013,276	-				+0.7
1,013,366	+				-1.5
1,013,366	+				-0.6
1,013,366	+				+0.7
1,013,403	+				-1.7
1,013,416	+				+0.0
1,013,417	-				-0.2
1,013,417	-				-0.9
1,013,460	-				+0.5
1,013,552	-				+0.2