Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04560

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,006,578	+		DDA3937_RS04550	0.84	-0.3
1,006,578	+		DDA3937_RS04550	0.84	+0.4
1,006,578	+		DDA3937_RS04550	0.84	-1.6
1,006,578	+		DDA3937_RS04550	0.84	+0.6
1,006,579	-		DDA3937_RS04550	0.84	+0.2
1,006,579	-		DDA3937_RS04550	0.84	+0.0
1,006,590	+		DDA3937_RS04550	0.86	+0.4
1,006,591	-		DDA3937_RS04550	0.87	-1.5
1,006,602	+		DDA3937_RS04550	0.89	-1.1
1,006,602	+		DDA3937_RS04550	0.89	+0.2
1,006,602	+		DDA3937_RS04550	0.89	-0.6
1,006,680	+				-0.3
1,006,792	+				-0.4
1,006,792	+				-0.7
1,006,793	-				+0.4
1,006,801	+				-1.9
1,006,812	+				-2.1
1,006,902	+		DDA3937_RS04555	0.22	+0.2
1,007,293	-		DDA3937_RS04555	0.80	+0.1
1,007,326	+		DDA3937_RS04555	0.85	+1.3
1,007,327	-		DDA3937_RS04555	0.85	+0.7
1,007,439	+				-0.5
1,007,440	-				+0.4
1,007,483	+				+0.9
1,007,483	+				+0.6
1,007,483	+				+0.2
1,007,483	+				-0.3
1,007,483	+				+1.0
1,007,483	+				-0.1
1,007,483	+				-0.5
1,007,483	+				-0.1
1,007,483	+				-1.0
1,007,483	+				+1.0
1,007,483	+				-0.3
1,007,484	-				-0.6
1,007,484	-				-0.0
1,007,484	-				-0.1
1,007,484	-				+0.4
1,007,484	-				-0.3
1,007,484	-				-1.1
1,007,484	-				+1.7
1,007,484	-				-0.5
1,007,485	+				-1.1
1,007,485	+				-1.3
1,007,486	-				-0.9
1,007,492	+				+0.5
1,007,493	-				+0.4
1,007,495	+				+1.5
1,007,496	-				-0.9
1,007,586	+				-0.4
1,007,694	+		DDA3937_RS04560	0.26	-0.3
1,007,694	+		DDA3937_RS04560	0.26	+0.4
1,007,694	+		DDA3937_RS04560	0.26	+1.7
1,007,694	+		DDA3937_RS04560	0.26	+0.8
1,007,694	+		DDA3937_RS04560	0.26	+1.5
1,007,694	+		DDA3937_RS04560	0.26	+1.3
1,007,695	-		DDA3937_RS04560	0.27	+3.0
1,007,695	-		DDA3937_RS04560	0.27	-0.1
1,007,695	-				-1.3
1,007,695	-		DDA3937_RS04560	0.27	-1.3
1,007,695	-		DDA3937_RS04560	0.27	-0.2
1,007,695	-		DDA3937_RS04560	0.27	+0.4
1,007,715	+		DDA3937_RS04560	0.30	-0.9
1,007,715	+		DDA3937_RS04560	0.30	+0.0
1,007,715	+		DDA3937_RS04560	0.30	+0.5
1,007,715	+		DDA3937_RS04560	0.30	+0.3
1,007,715	+		DDA3937_RS04560	0.30	-0.2
1,007,715	+		DDA3937_RS04560	0.30	-0.3
1,007,716	-		DDA3937_RS04560	0.30	-0.0
1,007,716	-		DDA3937_RS04560	0.30	-0.3
1,007,716	-		DDA3937_RS04560	0.30	-0.7
1,007,762	-		DDA3937_RS04560	0.37	-0.3
1,008,085	+				+0.7
1,008,085	+		DDA3937_RS04560	0.86	-0.3
1,008,086	-		DDA3937_RS04560	0.86	+0.3
1,008,086	-		DDA3937_RS04560	0.86	-0.3
1,008,156	-				-0.0
1,008,156	-				-0.9
1,008,165	+				-0.3
1,008,165	+				-1.3
1,008,165	+				-0.4
1,008,207	+				+0.7
1,008,207	+				+0.3
1,008,207	+				-0.3
1,008,208	-				+0.2
1,008,228	+				-0.6
1,008,283	+				-0.4
1,008,283	+				+0.7
1,008,283	+				-0.5
1,008,306	+				+1.6
1,008,306	+				-0.9
1,008,306	+				+0.4
1,008,307	-				-0.4
1,008,307	-				-0.7
1,008,307	-				-0.7
1,008,307	-				+0.8
1,008,318	+				+0.1
1,008,318	+				+0.0
1,008,318	+				-0.9
1,008,319	-				-0.3
1,008,319	-				-0.9
1,008,338	-				+1.8
1,008,348	+				-0.2
1,008,348	+				-1.2
1,008,348	+				+1.1
1,008,348	+				+0.3
1,008,348	+				-1.1
1,008,349	-				+0.4
1,008,483	+		DDA3937_RS04565	0.18	-1.5
1,008,483	+		DDA3937_RS04565	0.18	-1.9
1,008,756	-		DDA3937_RS04565	0.35	-0.9
1,008,762	+		DDA3937_RS04565	0.36	+0.1
1,008,763	-		DDA3937_RS04565	0.36	+1.9
1,008,763	-		DDA3937_RS04565	0.36	+1.0
1,008,763	-		DDA3937_RS04565	0.36	-0.4
1,008,763	-		DDA3937_RS04565	0.36	-0.3
1,008,763	-		DDA3937_RS04565	0.36	+0.1
1,008,763	-		DDA3937_RS04565	0.36	-1.5
1,008,763	-		DDA3937_RS04565	0.36	+0.2
1,008,763	-		DDA3937_RS04565	0.36	-0.9
1,008,763	-		DDA3937_RS04565	0.36	-0.4
1,008,854	+		DDA3937_RS04565	0.42	-1.3
1,008,854	+		DDA3937_RS04565	0.42	+0.2
1,008,855	-		DDA3937_RS04565	0.42	-1.3
1,008,855	-		DDA3937_RS04565	0.42	-0.3
1,008,864	+		DDA3937_RS04565	0.42	-0.0
1,008,864	+		DDA3937_RS04565	0.42	-0.3
1,008,865	-		DDA3937_RS04565	0.42	-0.0
1,008,865	-		DDA3937_RS04565	0.42	-1.1
1,008,865	-		DDA3937_RS04565	0.42	+0.3
1,008,906	+		DDA3937_RS04565	0.45	-0.1
1,008,907	-		DDA3937_RS04565	0.45	-0.6
1,008,907	-		DDA3937_RS04565	0.45	+0.5
1,008,935	+		DDA3937_RS04565	0.47	+0.0
1,008,936	-		DDA3937_RS04565	0.47	+1.0
1,008,936	-		DDA3937_RS04565	0.47	+0.5
1,008,936	-		DDA3937_RS04565	0.47	-0.3
1,009,001	-		DDA3937_RS04565	0.51	-1.0
1,009,041	+		DDA3937_RS04565	0.54	+1.2
1,009,041	+		DDA3937_RS04565	0.54	-0.6
1,009,041	+		DDA3937_RS04565	0.54	-0.5