Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04490 and DDA3937_RS04495 are separated by 162 nucleotides DDA3937_RS04495 and DDA3937_RS04500 are separated by 222 nucleotides
DDA3937_RS04490: DDA3937_RS04490 - cysteine synthase A, at 991,743 to 992,711
_RS04490
DDA3937_RS04495: DDA3937_RS04495 - sulfate transporter CysZ, at 992,874 to 993,644
_RS04495
DDA3937_RS04500: DDA3937_RS04500 - cell division protein ZipA, at 993,867 to 994,793
_RS04500
Position (kb) 992
993
994 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 992.149 kb on + strand, within DDA3937_RS04490 at 992.150 kb on - strand, within DDA3937_RS04490 at 992.150 kb on - strand, within DDA3937_RS04490 at 992.150 kb on - strand, within DDA3937_RS04490 at 992.150 kb on - strand, within DDA3937_RS04490 at 992.299 kb on + strand, within DDA3937_RS04490 at 992.453 kb on + strand, within DDA3937_RS04490 at 992.476 kb on + strand, within DDA3937_RS04490 at 992.476 kb on + strand, within DDA3937_RS04490 at 992.477 kb on - strand, within DDA3937_RS04490 at 992.477 kb on - strand, within DDA3937_RS04490 at 992.499 kb on - strand, within DDA3937_RS04490 at 992.699 kb on - strand at 992.705 kb on + strand at 992.705 kb on + strand at 992.711 kb on + strand at 992.722 kb on + strand at 992.725 kb on + strand at 992.725 kb on + strand at 992.726 kb on - strand at 992.726 kb on - strand at 992.760 kb on + strand at 992.760 kb on + strand at 992.760 kb on + strand at 992.761 kb on - strand at 992.804 kb on + strand at 992.834 kb on - strand at 992.841 kb on + strand at 992.841 kb on + strand at 992.842 kb on - strand at 992.842 kb on - strand at 992.843 kb on + strand at 992.843 kb on + strand at 992.843 kb on + strand at 992.844 kb on - strand at 992.844 kb on - strand at 992.844 kb on - strand at 992.850 kb on + strand at 992.850 kb on + strand at 992.850 kb on + strand at 992.850 kb on + strand at 992.850 kb on + strand at 992.850 kb on + strand at 992.850 kb on + strand at 992.966 kb on + strand, within DDA3937_RS04495 at 992.966 kb on + strand, within DDA3937_RS04495 at 992.966 kb on + strand, within DDA3937_RS04495 at 992.967 kb on - strand, within DDA3937_RS04495 at 993.012 kb on + strand, within DDA3937_RS04495 at 993.012 kb on + strand, within DDA3937_RS04495 at 993.013 kb on - strand, within DDA3937_RS04495 at 993.013 kb on - strand, within DDA3937_RS04495 at 993.186 kb on + strand, within DDA3937_RS04495 at 993.193 kb on - strand, within DDA3937_RS04495 at 993.201 kb on + strand, within DDA3937_RS04495 at 993.202 kb on - strand, within DDA3937_RS04495 at 993.205 kb on + strand, within DDA3937_RS04495 at 993.205 kb on + strand, within DDA3937_RS04495 at 993.205 kb on + strand, within DDA3937_RS04495 at 993.206 kb on - strand, within DDA3937_RS04495 at 993.421 kb on + strand, within DDA3937_RS04495 at 993.421 kb on + strand, within DDA3937_RS04495 at 993.524 kb on + strand, within DDA3937_RS04495 at 993.525 kb on - strand, within DDA3937_RS04495 at 993.598 kb on + strand at 993.598 kb on + strand at 993.598 kb on + strand at 993.599 kb on - strand at 993.637 kb on + strand at 993.661 kb on + strand at 993.661 kb on + strand at 993.661 kb on + strand at 993.661 kb on + strand at 993.662 kb on - strand at 993.662 kb on - strand at 993.662 kb on - strand at 993.667 kb on - strand at 993.667 kb on - strand at 993.685 kb on + strand at 993.708 kb on + strand at 993.709 kb on - strand at 993.709 kb on - strand at 993.709 kb on - strand at 993.760 kb on - strand at 993.760 kb on - strand at 993.762 kb on + strand at 993.763 kb on - strand at 993.767 kb on + strand at 993.772 kb on + strand at 993.795 kb on + strand at 993.813 kb on + strand at 993.819 kb on + strand at 993.819 kb on + strand at 993.819 kb on + strand at 993.819 kb on + strand at 993.819 kb on + strand at 993.819 kb on + strand at 993.819 kb on + strand at 993.819 kb on + strand at 993.825 kb on + strand at 993.845 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 992,149 + DDA3937_RS04490 0.42 +0.7 992,150 - DDA3937_RS04490 0.42 +0.3 992,150 - DDA3937_RS04490 0.42 -0.3 992,150 - DDA3937_RS04490 0.42 +0.3 992,150 - DDA3937_RS04490 0.42 +1.5 992,299 + DDA3937_RS04490 0.57 +0.7 992,453 + DDA3937_RS04490 0.73 +0.7 992,476 + DDA3937_RS04490 0.76 +0.2 992,476 + DDA3937_RS04490 0.76 +1.1 992,477 - DDA3937_RS04490 0.76 -0.1 992,477 - DDA3937_RS04490 0.76 -0.1 992,499 - DDA3937_RS04490 0.78 +0.7 992,699 - +0.1 992,705 + +0.3 992,705 + +0.7 992,711 + -0.5 992,722 + +0.6 992,725 + +0.5 992,725 + +1.5 992,726 - +0.7 992,726 - -0.3 992,760 + +0.9 992,760 + -0.3 992,760 + +1.6 992,761 - -1.1 992,804 + +1.0 992,834 - -0.7 992,841 + +0.1 992,841 + -0.3 992,842 - -0.3 992,842 - -0.4 992,843 + -1.3 992,843 + +0.2 992,843 + -0.0 992,844 - -0.0 992,844 - +0.1 992,844 - -0.9 992,850 + +0.7 992,850 + +1.2 992,850 + -0.1 992,850 + -0.5 992,850 + +1.5 992,850 + -0.4 992,850 + -0.9 992,966 + DDA3937_RS04495 0.12 -0.1 992,966 + DDA3937_RS04495 0.12 -1.5 992,966 + DDA3937_RS04495 0.12 -1.1 992,967 - DDA3937_RS04495 0.12 -0.0 993,012 + DDA3937_RS04495 0.18 -0.1 993,012 + DDA3937_RS04495 0.18 -0.9 993,013 - DDA3937_RS04495 0.18 -0.1 993,013 - DDA3937_RS04495 0.18 -0.8 993,186 + DDA3937_RS04495 0.40 -1.9 993,193 - DDA3937_RS04495 0.41 -0.4 993,201 + DDA3937_RS04495 0.42 -0.6 993,202 - DDA3937_RS04495 0.43 -0.4 993,205 + DDA3937_RS04495 0.43 -0.9 993,205 + DDA3937_RS04495 0.43 -0.5 993,205 + DDA3937_RS04495 0.43 -3.4 993,206 - DDA3937_RS04495 0.43 +1.3 993,421 + DDA3937_RS04495 0.71 +0.1 993,421 + DDA3937_RS04495 0.71 -0.4 993,524 + DDA3937_RS04495 0.84 -0.8 993,525 - DDA3937_RS04495 0.84 -2.0 993,598 + -0.3 993,598 + -0.3 993,598 + -0.3 993,599 - +0.3 993,637 + -0.0 993,661 + -0.3 993,661 + -0.6 993,661 + +0.6 993,661 + -0.4 993,662 - +0.3 993,662 - +0.1 993,662 - +1.1 993,667 - +0.7 993,667 - +0.1 993,685 + +0.0 993,708 + +0.9 993,709 - +1.6 993,709 - -1.6 993,709 - +0.7 993,760 - -0.9 993,760 - -0.5 993,762 + -0.1 993,763 - -1.6 993,767 + -1.4 993,772 + -1.7 993,795 + -0.9 993,813 + +0.7 993,819 + -3.1 993,819 + -0.6 993,819 + -3.3 993,819 + -1.6 993,819 + -1.8 993,819 + +0.7 993,819 + -2.1 993,819 + -0.5 993,825 + -1.3 993,845 + -2.6
Or see this region's nucleotide sequence