Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS21675 and DDA3937_RS04440 are separated by 38 nucleotides DDA3937_RS04440 and DDA3937_RS04445 are separated by 567 nucleotides DDA3937_RS04445 and DDA3937_RS04450 are separated by 3 nucleotides
DDA3937_RS21675: DDA3937_RS21675 - DUF4225 domain-containing protein, at 978,973 to 979,806
_RS21675
DDA3937_RS04440: DDA3937_RS04440 - hypothetical protein, at 979,845 to 980,234
_RS04440
DDA3937_RS04445: DDA3937_RS04445 - MacB family efflux pump subunit, at 980,802 to 982,748
_RS04445
DDA3937_RS04450: DDA3937_RS04450 - efflux RND transporter periplasmic adaptor subunit, at 982,752 to 983,969
_RS04450
Position (kb) 980
981
982
983 Strain fitness (log2 ratio) -2
-1
0
1
2 at 979.858 kb on + strand at 980.413 kb on - strand at 980.422 kb on - strand at 980.429 kb on - strand at 980.434 kb on - strand at 980.493 kb on + strand at 980.494 kb on - strand at 980.498 kb on - strand at 980.498 kb on - strand at 980.590 kb on + strand at 980.593 kb on - strand at 980.617 kb on - strand at 980.647 kb on - strand at 980.656 kb on + strand at 980.657 kb on - strand at 980.658 kb on + strand at 980.658 kb on + strand at 980.658 kb on + strand at 980.658 kb on + strand at 980.658 kb on + strand at 980.659 kb on - strand at 980.659 kb on - strand at 980.679 kb on - strand at 980.679 kb on - strand at 980.682 kb on + strand at 980.683 kb on - strand at 980.683 kb on - strand at 980.683 kb on - strand at 980.683 kb on - strand at 980.683 kb on - strand at 980.694 kb on + strand at 980.695 kb on - strand at 980.923 kb on + strand at 980.923 kb on + strand at 980.924 kb on - strand at 980.982 kb on + strand at 980.982 kb on + strand at 980.982 kb on + strand at 980.983 kb on - strand at 980.992 kb on - strand at 981.076 kb on - strand, within DDA3937_RS04445 at 981.081 kb on + strand, within DDA3937_RS04445 at 981.379 kb on + strand, within DDA3937_RS04445 at 981.379 kb on + strand, within DDA3937_RS04445 at 981.380 kb on - strand, within DDA3937_RS04445 at 981.392 kb on + strand, within DDA3937_RS04445 at 981.516 kb on - strand, within DDA3937_RS04445 at 981.602 kb on - strand, within DDA3937_RS04445 at 981.602 kb on - strand, within DDA3937_RS04445 at 981.602 kb on - strand, within DDA3937_RS04445 at 981.602 kb on - strand, within DDA3937_RS04445 at 981.602 kb on - strand, within DDA3937_RS04445 at 981.602 kb on - strand, within DDA3937_RS04445 at 981.660 kb on - strand, within DDA3937_RS04445 at 981.667 kb on + strand, within DDA3937_RS04445 at 981.715 kb on + strand, within DDA3937_RS04445 at 981.715 kb on + strand, within DDA3937_RS04445 at 981.715 kb on + strand, within DDA3937_RS04445 at 981.715 kb on + strand, within DDA3937_RS04445 at 981.715 kb on + strand, within DDA3937_RS04445 at 981.715 kb on + strand, within DDA3937_RS04445 at 981.715 kb on + strand, within DDA3937_RS04445 at 981.715 kb on + strand, within DDA3937_RS04445 at 981.716 kb on - strand, within DDA3937_RS04445 at 981.716 kb on - strand, within DDA3937_RS04445 at 981.716 kb on - strand, within DDA3937_RS04445 at 981.716 kb on - strand, within DDA3937_RS04445 at 981.716 kb on - strand at 981.716 kb on - strand, within DDA3937_RS04445 at 981.716 kb on - strand, within DDA3937_RS04445 at 981.716 kb on - strand, within DDA3937_RS04445 at 981.716 kb on - strand, within DDA3937_RS04445 at 981.716 kb on - strand, within DDA3937_RS04445 at 981.716 kb on - strand, within DDA3937_RS04445 at 981.779 kb on + strand, within DDA3937_RS04445 at 981.779 kb on + strand, within DDA3937_RS04445 at 981.815 kb on + strand, within DDA3937_RS04445 at 981.815 kb on + strand, within DDA3937_RS04445 at 981.816 kb on - strand, within DDA3937_RS04445 at 981.816 kb on - strand, within DDA3937_RS04445 at 982.136 kb on + strand, within DDA3937_RS04445 at 982.160 kb on + strand, within DDA3937_RS04445 at 982.160 kb on + strand, within DDA3937_RS04445 at 982.160 kb on + strand, within DDA3937_RS04445 at 982.160 kb on + strand, within DDA3937_RS04445 at 982.160 kb on + strand, within DDA3937_RS04445 at 982.161 kb on - strand, within DDA3937_RS04445 at 982.286 kb on + strand, within DDA3937_RS04445 at 982.408 kb on + strand, within DDA3937_RS04445 at 982.408 kb on + strand at 982.409 kb on - strand, within DDA3937_RS04445 at 982.409 kb on - strand, within DDA3937_RS04445 at 982.452 kb on - strand, within DDA3937_RS04445 at 982.452 kb on - strand, within DDA3937_RS04445 at 982.589 kb on + strand at 982.589 kb on + strand at 982.677 kb on + strand at 982.703 kb on + strand at 982.704 kb on - strand at 982.753 kb on + strand at 982.794 kb on - strand at 982.863 kb on - strand at 982.864 kb on + strand at 982.865 kb on - strand at 982.865 kb on - strand at 982.865 kb on - strand at 982.865 kb on - strand at 982.899 kb on + strand, within DDA3937_RS04450 at 982.899 kb on + strand, within DDA3937_RS04450 at 982.899 kb on + strand, within DDA3937_RS04450 at 982.899 kb on + strand, within DDA3937_RS04450 at 983.009 kb on + strand, within DDA3937_RS04450 at 983.009 kb on + strand, within DDA3937_RS04450 at 983.010 kb on - strand, within DDA3937_RS04450 at 983.011 kb on + strand, within DDA3937_RS04450 at 983.011 kb on + strand, within DDA3937_RS04450 at 983.011 kb on + strand, within DDA3937_RS04450 at 983.012 kb on - strand, within DDA3937_RS04450 at 983.012 kb on - strand, within DDA3937_RS04450 at 983.033 kb on + strand, within DDA3937_RS04450 at 983.034 kb on - strand, within DDA3937_RS04450 at 983.034 kb on - strand, within DDA3937_RS04450 at 983.077 kb on + strand, within DDA3937_RS04450 at 983.077 kb on + strand, within DDA3937_RS04450 at 983.077 kb on + strand, within DDA3937_RS04450 at 983.078 kb on - strand, within DDA3937_RS04450 at 983.078 kb on - strand, within DDA3937_RS04450 at 983.078 kb on - strand, within DDA3937_RS04450 at 983.078 kb on - strand, within DDA3937_RS04450 at 983.111 kb on + strand, within DDA3937_RS04450 at 983.126 kb on + strand, within DDA3937_RS04450 at 983.204 kb on - strand, within DDA3937_RS04450 at 983.229 kb on - strand, within DDA3937_RS04450 at 983.265 kb on - strand, within DDA3937_RS04450 at 983.420 kb on - strand, within DDA3937_RS04450 at 983.463 kb on + strand, within DDA3937_RS04450 at 983.463 kb on + strand, within DDA3937_RS04450 at 983.464 kb on - strand, within DDA3937_RS04450 at 983.683 kb on - strand, within DDA3937_RS04450
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 979,858 + -1.4 980,413 - -0.6 980,422 - -0.9 980,429 - -0.2 980,434 - +0.7 980,493 + -0.3 980,494 - -0.7 980,498 - +0.6 980,498 - +0.4 980,590 + +0.6 980,593 - +0.5 980,617 - -0.3 980,647 - -1.1 980,656 + -0.2 980,657 - +0.7 980,658 + -2.7 980,658 + +1.0 980,658 + -0.3 980,658 + -0.3 980,658 + +1.1 980,659 - +1.0 980,659 - +0.1 980,679 - +0.7 980,679 - -0.3 980,682 + -0.5 980,683 - +1.1 980,683 - -1.0 980,683 - -1.0 980,683 - +1.5 980,683 - -0.8 980,694 + +0.9 980,695 - -0.6 980,923 + -2.2 980,923 + +0.1 980,924 - -0.3 980,982 + +1.0 980,982 + +0.7 980,982 + +0.3 980,983 - -0.5 980,992 - -0.4 981,076 - DDA3937_RS04445 0.14 +0.9 981,081 + DDA3937_RS04445 0.14 -0.6 981,379 + DDA3937_RS04445 0.30 +1.7 981,379 + DDA3937_RS04445 0.30 -1.4 981,380 - DDA3937_RS04445 0.30 +1.6 981,392 + DDA3937_RS04445 0.30 -0.1 981,516 - DDA3937_RS04445 0.37 -1.0 981,602 - DDA3937_RS04445 0.41 -0.1 981,602 - DDA3937_RS04445 0.41 +0.2 981,602 - DDA3937_RS04445 0.41 +0.2 981,602 - DDA3937_RS04445 0.41 +1.6 981,602 - DDA3937_RS04445 0.41 -0.0 981,602 - DDA3937_RS04445 0.41 +0.6 981,660 - DDA3937_RS04445 0.44 +0.3 981,667 + DDA3937_RS04445 0.44 +2.3 981,715 + DDA3937_RS04445 0.47 -0.1 981,715 + DDA3937_RS04445 0.47 +2.3 981,715 + DDA3937_RS04445 0.47 +0.4 981,715 + DDA3937_RS04445 0.47 -0.3 981,715 + DDA3937_RS04445 0.47 +0.7 981,715 + DDA3937_RS04445 0.47 -1.4 981,715 + DDA3937_RS04445 0.47 +0.2 981,715 + DDA3937_RS04445 0.47 -0.4 981,716 - DDA3937_RS04445 0.47 +1.1 981,716 - DDA3937_RS04445 0.47 -0.1 981,716 - DDA3937_RS04445 0.47 +0.2 981,716 - DDA3937_RS04445 0.47 +1.1 981,716 - +0.7 981,716 - DDA3937_RS04445 0.47 -0.3 981,716 - DDA3937_RS04445 0.47 +0.4 981,716 - DDA3937_RS04445 0.47 -0.5 981,716 - DDA3937_RS04445 0.47 +0.3 981,716 - DDA3937_RS04445 0.47 +1.5 981,716 - DDA3937_RS04445 0.47 -0.7 981,779 + DDA3937_RS04445 0.50 +1.1 981,779 + DDA3937_RS04445 0.50 -0.5 981,815 + DDA3937_RS04445 0.52 -0.7 981,815 + DDA3937_RS04445 0.52 -0.1 981,816 - DDA3937_RS04445 0.52 +0.5 981,816 - DDA3937_RS04445 0.52 -2.6 982,136 + DDA3937_RS04445 0.69 -0.3 982,160 + DDA3937_RS04445 0.70 +0.7 982,160 + DDA3937_RS04445 0.70 +0.4 982,160 + DDA3937_RS04445 0.70 -0.4 982,160 + DDA3937_RS04445 0.70 +1.1 982,160 + DDA3937_RS04445 0.70 -0.1 982,161 - DDA3937_RS04445 0.70 +0.3 982,286 + DDA3937_RS04445 0.76 +0.1 982,408 + DDA3937_RS04445 0.82 -0.9 982,408 + +2.1 982,409 - DDA3937_RS04445 0.83 +0.2 982,409 - DDA3937_RS04445 0.83 -1.0 982,452 - DDA3937_RS04445 0.85 +1.0 982,452 - DDA3937_RS04445 0.85 -1.3 982,589 + +0.3 982,589 + +0.2 982,677 + -0.1 982,703 + -0.3 982,704 - +0.5 982,753 + -0.3 982,794 - -0.1 982,863 - -1.2 982,864 + +0.4 982,865 - -2.6 982,865 - -1.4 982,865 - -0.1 982,865 - -0.4 982,899 + DDA3937_RS04450 0.12 -1.6 982,899 + DDA3937_RS04450 0.12 +0.1 982,899 + DDA3937_RS04450 0.12 -0.1 982,899 + DDA3937_RS04450 0.12 +0.1 983,009 + DDA3937_RS04450 0.21 -0.6 983,009 + DDA3937_RS04450 0.21 +0.9 983,010 - DDA3937_RS04450 0.21 -0.1 983,011 + DDA3937_RS04450 0.21 -0.2 983,011 + DDA3937_RS04450 0.21 +0.1 983,011 + DDA3937_RS04450 0.21 +0.1 983,012 - DDA3937_RS04450 0.21 +0.2 983,012 - DDA3937_RS04450 0.21 +0.4 983,033 + DDA3937_RS04450 0.23 -0.3 983,034 - DDA3937_RS04450 0.23 +0.2 983,034 - DDA3937_RS04450 0.23 -0.6 983,077 + DDA3937_RS04450 0.27 -0.5 983,077 + DDA3937_RS04450 0.27 -0.9 983,077 + DDA3937_RS04450 0.27 -0.6 983,078 - DDA3937_RS04450 0.27 -1.9 983,078 - DDA3937_RS04450 0.27 -0.3 983,078 - DDA3937_RS04450 0.27 +0.9 983,078 - DDA3937_RS04450 0.27 -1.6 983,111 + DDA3937_RS04450 0.29 -1.3 983,126 + DDA3937_RS04450 0.31 -0.6 983,204 - DDA3937_RS04450 0.37 -1.6 983,229 - DDA3937_RS04450 0.39 +1.5 983,265 - DDA3937_RS04450 0.42 -0.9 983,420 - DDA3937_RS04450 0.55 +0.6 983,463 + DDA3937_RS04450 0.58 -0.4 983,463 + DDA3937_RS04450 0.58 +0.5 983,464 - DDA3937_RS04450 0.58 -0.3 983,683 - DDA3937_RS04450 0.76 +0.2
Or see this region's nucleotide sequence