Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04425 and DDA3937_RS04430 are separated by 688 nucleotides DDA3937_RS04430 and DDA3937_RS21675 are separated by 1 nucleotides DDA3937_RS21675 and DDA3937_RS04440 are separated by 38 nucleotides
DDA3937_RS04425: DDA3937_RS04425 - cysteine synthase CysM, at 976,922 to 977,803
_RS04425
DDA3937_RS04430: DDA3937_RS04430 - Hcp family type VI secretion system effector, at 978,492 to 978,971
_RS04430
DDA3937_RS21675: DDA3937_RS21675 - DUF4225 domain-containing protein, at 978,973 to 979,806
_RS21675
DDA3937_RS04440: DDA3937_RS04440 - hypothetical protein, at 979,845 to 980,234
_RS04440
Position (kb) 978
979 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 977.503 kb on + strand, within DDA3937_RS04425 at 977.503 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.569 kb on + strand, within DDA3937_RS04425 at 977.569 kb on + strand, within DDA3937_RS04425 at 977.569 kb on + strand, within DDA3937_RS04425 at 977.570 kb on - strand, within DDA3937_RS04425 at 977.570 kb on - strand, within DDA3937_RS04425 at 977.570 kb on - strand, within DDA3937_RS04425 at 977.608 kb on + strand, within DDA3937_RS04425 at 977.608 kb on + strand, within DDA3937_RS04425 at 977.608 kb on + strand, within DDA3937_RS04425 at 977.608 kb on + strand, within DDA3937_RS04425 at 977.608 kb on + strand, within DDA3937_RS04425 at 977.614 kb on + strand, within DDA3937_RS04425 at 977.614 kb on + strand, within DDA3937_RS04425 at 977.615 kb on - strand, within DDA3937_RS04425 at 977.615 kb on - strand, within DDA3937_RS04425 at 977.777 kb on + strand at 977.777 kb on + strand at 977.853 kb on + strand at 977.853 kb on + strand at 977.866 kb on + strand at 977.867 kb on - strand at 978.001 kb on + strand at 978.001 kb on + strand at 978.001 kb on + strand at 978.002 kb on - strand at 978.002 kb on - strand at 978.002 kb on - strand at 978.002 kb on - strand at 978.005 kb on + strand at 978.006 kb on - strand at 978.018 kb on + strand at 978.018 kb on + strand at 978.019 kb on - strand at 978.050 kb on + strand at 978.050 kb on + strand at 978.050 kb on + strand at 978.050 kb on + strand at 978.050 kb on + strand at 978.051 kb on - strand at 978.051 kb on - strand at 978.051 kb on - strand at 978.051 kb on - strand at 978.051 kb on - strand at 978.051 kb on - strand at 978.051 kb on - strand at 978.086 kb on + strand at 978.086 kb on + strand at 978.086 kb on + strand at 978.087 kb on - strand at 978.087 kb on - strand at 978.088 kb on + strand at 978.088 kb on + strand at 978.089 kb on - strand at 978.089 kb on - strand at 978.089 kb on - strand at 978.089 kb on - strand at 978.092 kb on - strand at 978.092 kb on - strand at 978.092 kb on - strand at 978.210 kb on + strand at 978.397 kb on - strand at 978.400 kb on + strand at 978.400 kb on + strand at 978.401 kb on - strand at 978.401 kb on - strand at 978.437 kb on - strand at 978.518 kb on + strand at 978.518 kb on + strand at 978.519 kb on - strand at 978.539 kb on + strand at 978.644 kb on - strand, within DDA3937_RS04430 at 978.648 kb on - strand, within DDA3937_RS04430 at 978.659 kb on - strand, within DDA3937_RS04430 at 978.659 kb on - strand, within DDA3937_RS04430 at 978.789 kb on + strand, within DDA3937_RS04430 at 978.943 kb on - strand at 978.945 kb on - strand at 978.962 kb on - strand at 979.084 kb on + strand, within DDA3937_RS21675 at 979.086 kb on + strand, within DDA3937_RS21675 at 979.098 kb on - strand, within DDA3937_RS21675 at 979.181 kb on + strand, within DDA3937_RS21675 at 979.249 kb on - strand, within DDA3937_RS21675 at 979.502 kb on - strand, within DDA3937_RS21675 at 979.786 kb on + strand at 979.795 kb on - strand at 979.858 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 977,503 + DDA3937_RS04425 0.66 +0.3 977,503 + DDA3937_RS04425 0.66 -0.1 977,567 + DDA3937_RS04425 0.73 -0.3 977,567 + DDA3937_RS04425 0.73 -0.3 977,567 + DDA3937_RS04425 0.73 +0.6 977,567 + DDA3937_RS04425 0.73 -0.6 977,567 + DDA3937_RS04425 0.73 -0.8 977,567 + DDA3937_RS04425 0.73 -0.6 977,567 + DDA3937_RS04425 0.73 -1.8 977,567 + DDA3937_RS04425 0.73 -1.8 977,568 - DDA3937_RS04425 0.73 -1.3 977,568 - DDA3937_RS04425 0.73 -1.6 977,568 - DDA3937_RS04425 0.73 +0.2 977,568 - DDA3937_RS04425 0.73 -0.3 977,568 - DDA3937_RS04425 0.73 -2.1 977,568 - DDA3937_RS04425 0.73 -0.1 977,569 + DDA3937_RS04425 0.73 -0.2 977,569 + DDA3937_RS04425 0.73 -1.6 977,569 + DDA3937_RS04425 0.73 -2.8 977,570 - DDA3937_RS04425 0.73 -2.6 977,570 - DDA3937_RS04425 0.73 +0.2 977,570 - DDA3937_RS04425 0.73 -0.5 977,608 + DDA3937_RS04425 0.78 -1.3 977,608 + DDA3937_RS04425 0.78 +0.2 977,608 + DDA3937_RS04425 0.78 -0.1 977,608 + DDA3937_RS04425 0.78 -1.6 977,608 + DDA3937_RS04425 0.78 -2.0 977,614 + DDA3937_RS04425 0.78 -0.4 977,614 + DDA3937_RS04425 0.78 -0.7 977,615 - DDA3937_RS04425 0.79 -1.4 977,615 - DDA3937_RS04425 0.79 -1.3 977,777 + -0.3 977,777 + +0.4 977,853 + +0.2 977,853 + -0.0 977,866 + +0.1 977,867 - +0.5 978,001 + +0.1 978,001 + -0.3 978,001 + -0.7 978,002 - -0.0 978,002 - -1.0 978,002 - -0.3 978,002 - +0.6 978,005 + +0.7 978,006 - -1.8 978,018 + -1.2 978,018 + -1.6 978,019 - -0.1 978,050 + -0.1 978,050 + -0.4 978,050 + +0.7 978,050 + +0.6 978,050 + -0.0 978,051 - +0.3 978,051 - -0.3 978,051 - -1.8 978,051 - -1.1 978,051 - +0.1 978,051 - -1.3 978,051 - +1.2 978,086 + +1.1 978,086 + +0.8 978,086 + -0.1 978,087 - -1.1 978,087 - +0.2 978,088 + -0.3 978,088 + -0.5 978,089 - -0.6 978,089 - -0.5 978,089 - -0.5 978,089 - -1.0 978,092 - -0.8 978,092 - -2.8 978,092 - +0.2 978,210 + +0.7 978,397 - +0.0 978,400 + -0.1 978,400 + -0.7 978,401 - -0.4 978,401 - -0.2 978,437 - +0.0 978,518 + -2.1 978,518 + -0.1 978,519 - -2.1 978,539 + -1.4 978,644 - DDA3937_RS04430 0.32 -0.5 978,648 - DDA3937_RS04430 0.33 -0.6 978,659 - DDA3937_RS04430 0.35 -0.7 978,659 - DDA3937_RS04430 0.35 -1.3 978,789 + DDA3937_RS04430 0.62 -1.7 978,943 - -0.7 978,945 - +0.2 978,962 - -0.4 979,084 + DDA3937_RS21675 0.13 -0.3 979,086 + DDA3937_RS21675 0.14 -1.0 979,098 - DDA3937_RS21675 0.15 -0.9 979,181 + DDA3937_RS21675 0.25 +0.6 979,249 - DDA3937_RS21675 0.33 +0.7 979,502 - DDA3937_RS21675 0.63 -1.0 979,786 + +0.7 979,795 - -1.6 979,858 + -1.4
Or see this region's nucleotide sequence