Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04115 and DDA3937_RS04120 are separated by 107 nucleotides DDA3937_RS04120 and DDA3937_RS04125 overlap by 23 nucleotides DDA3937_RS04125 and DDA3937_RS04130 are separated by 1 nucleotides DDA3937_RS04130 and DDA3937_RS04135 are separated by 3 nucleotides
DDA3937_RS04115: DDA3937_RS04115 - site-specific integrase, at 915,452 to 916,543
_RS04115
DDA3937_RS04120: DDA3937_RS04120 - ASCH domain-containing protein, at 916,651 to 917,022
_RS04120
DDA3937_RS04125: DDA3937_RS04125 - acetyltransferase, at 917,000 to 918,073
_RS04125
DDA3937_RS04130: DDA3937_RS04130 - hypothetical protein, at 918,075 to 918,857
_RS04130
DDA3937_RS04135: DDA3937_RS04135 - helix-turn-helix domain-containing protein, at 918,861 to 919,712
_RS04135
Position (kb) 916
917
918
919 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 916.001 kb on + strand, within DDA3937_RS04115 at 916.040 kb on + strand, within DDA3937_RS04115 at 916.040 kb on + strand, within DDA3937_RS04115 at 916.040 kb on + strand, within DDA3937_RS04115 at 916.041 kb on - strand, within DDA3937_RS04115 at 916.122 kb on - strand, within DDA3937_RS04115 at 916.283 kb on - strand, within DDA3937_RS04115 at 916.307 kb on - strand, within DDA3937_RS04115 at 916.366 kb on + strand, within DDA3937_RS04115 at 916.453 kb on + strand at 916.498 kb on - strand at 916.531 kb on + strand at 916.531 kb on + strand at 916.532 kb on - strand at 916.543 kb on + strand at 916.543 kb on + strand at 916.543 kb on + strand at 916.544 kb on - strand at 916.544 kb on - strand at 916.544 kb on - strand at 916.544 kb on - strand at 916.556 kb on + strand at 916.557 kb on - strand at 916.557 kb on - strand at 916.571 kb on + strand at 916.571 kb on + strand at 916.571 kb on + strand at 916.571 kb on + strand at 916.571 kb on + strand at 916.571 kb on + strand at 916.571 kb on + strand at 916.572 kb on - strand at 916.572 kb on - strand at 916.572 kb on - strand at 916.575 kb on + strand at 916.575 kb on + strand at 916.575 kb on + strand at 916.576 kb on - strand at 916.576 kb on - strand at 916.576 kb on - strand at 916.576 kb on - strand at 916.602 kb on + strand at 916.602 kb on + strand at 916.602 kb on + strand at 916.602 kb on + strand at 916.602 kb on + strand at 916.602 kb on + strand at 916.602 kb on + strand at 916.602 kb on + strand at 916.602 kb on + strand at 916.602 kb on + strand at 916.602 kb on + strand at 916.602 kb on + strand at 916.603 kb on - strand at 916.603 kb on - strand at 916.603 kb on - strand at 916.603 kb on - strand at 916.603 kb on - strand at 916.603 kb on - strand at 916.652 kb on + strand at 916.652 kb on + strand at 916.653 kb on - strand at 916.653 kb on - strand at 917.015 kb on - strand at 917.208 kb on - strand, within DDA3937_RS04125 at 917.332 kb on - strand, within DDA3937_RS04125 at 917.332 kb on - strand, within DDA3937_RS04125 at 917.397 kb on - strand, within DDA3937_RS04125 at 917.443 kb on - strand, within DDA3937_RS04125 at 917.459 kb on - strand, within DDA3937_RS04125 at 917.459 kb on - strand, within DDA3937_RS04125 at 917.565 kb on + strand, within DDA3937_RS04125 at 917.700 kb on + strand, within DDA3937_RS04125 at 917.701 kb on - strand, within DDA3937_RS04125 at 917.839 kb on + strand, within DDA3937_RS04125 at 917.839 kb on + strand, within DDA3937_RS04125 at 917.840 kb on - strand, within DDA3937_RS04125 at 917.870 kb on + strand, within DDA3937_RS04125 at 917.938 kb on - strand, within DDA3937_RS04125 at 917.938 kb on - strand, within DDA3937_RS04125 at 918.150 kb on + strand at 918.170 kb on + strand, within DDA3937_RS04130 at 918.202 kb on + strand, within DDA3937_RS04130 at 918.506 kb on + strand, within DDA3937_RS04130 at 918.830 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 916,001 + DDA3937_RS04115 0.50 -1.8 916,040 + DDA3937_RS04115 0.54 +0.5 916,040 + DDA3937_RS04115 0.54 -0.6 916,040 + DDA3937_RS04115 0.54 -1.6 916,041 - DDA3937_RS04115 0.54 +0.2 916,122 - DDA3937_RS04115 0.61 +0.5 916,283 - DDA3937_RS04115 0.76 +0.6 916,307 - DDA3937_RS04115 0.78 +0.9 916,366 + DDA3937_RS04115 0.84 +0.8 916,453 + +0.2 916,498 - +0.3 916,531 + +0.3 916,531 + +0.8 916,532 - +0.5 916,543 + -0.6 916,543 + -0.9 916,543 + +0.5 916,544 - +0.1 916,544 - -1.3 916,544 - -0.2 916,544 - -0.2 916,556 + +0.1 916,557 - -0.0 916,557 - -0.1 916,571 + -0.4 916,571 + -0.5 916,571 + +0.3 916,571 + +2.1 916,571 + -0.6 916,571 + -1.3 916,571 + -1.2 916,572 - +1.8 916,572 - +1.1 916,572 - -1.2 916,575 + -0.1 916,575 + -0.1 916,575 + +0.8 916,576 - +0.3 916,576 - -1.2 916,576 - -0.0 916,576 - -0.4 916,602 + -0.8 916,602 + -0.2 916,602 + -0.3 916,602 + +0.9 916,602 + +0.1 916,602 + +0.5 916,602 + -1.2 916,602 + -0.2 916,602 + +0.8 916,602 + -0.5 916,602 + -0.4 916,602 + -0.8 916,603 - -1.2 916,603 - -0.5 916,603 - -1.2 916,603 - -1.1 916,603 - -1.2 916,603 - +0.2 916,652 + -0.2 916,652 + -1.2 916,653 - +0.5 916,653 - -1.4 917,015 - -1.2 917,208 - DDA3937_RS04125 0.19 -0.7 917,332 - DDA3937_RS04125 0.31 -0.7 917,332 - DDA3937_RS04125 0.31 -1.2 917,397 - DDA3937_RS04125 0.37 -1.5 917,443 - DDA3937_RS04125 0.41 -0.2 917,459 - DDA3937_RS04125 0.43 -0.4 917,459 - DDA3937_RS04125 0.43 +0.2 917,565 + DDA3937_RS04125 0.53 -1.2 917,700 + DDA3937_RS04125 0.65 -3.0 917,701 - DDA3937_RS04125 0.65 -0.2 917,839 + DDA3937_RS04125 0.78 -0.8 917,839 + DDA3937_RS04125 0.78 -1.5 917,840 - DDA3937_RS04125 0.78 +0.6 917,870 + DDA3937_RS04125 0.81 -0.6 917,938 - DDA3937_RS04125 0.87 -0.1 917,938 - DDA3937_RS04125 0.87 -0.4 918,150 + -0.4 918,170 + DDA3937_RS04130 0.12 -0.0 918,202 + DDA3937_RS04130 0.16 -0.1 918,506 + DDA3937_RS04130 0.55 -0.6 918,830 + -0.1
Or see this region's nucleotide sequence