Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03935

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS03930 and DDA3937_RS03935 are separated by 22 nucleotidesDDA3937_RS03935 and DDA3937_RS21885 overlap by 8 nucleotides DDA3937_RS03930: DDA3937_RS03930 - DNA phosphorothioation-dependent restriction protein DptH, at 873,441 to 878,521 _RS03930 DDA3937_RS03935: DDA3937_RS03935 - hypothetical protein, at 878,544 to 879,647 _RS03935 DDA3937_RS21885: DDA3937_RS21885 - hypothetical protein, at 879,640 to 880,596 _RS21885 Position (kb) 878 879 880Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 877.559 kb on - strand, within DDA3937_RS03930at 877.582 kb on + strand, within DDA3937_RS03930at 877.582 kb on + strand, within DDA3937_RS03930at 877.583 kb on - strand, within DDA3937_RS03930at 877.583 kb on - strand, within DDA3937_RS03930at 877.583 kb on - strand, within DDA3937_RS03930at 877.622 kb on + strand, within DDA3937_RS03930at 877.622 kb on + strand, within DDA3937_RS03930at 877.623 kb on - strand, within DDA3937_RS03930at 877.664 kb on + strand, within DDA3937_RS03930at 877.671 kb on + strand, within DDA3937_RS03930at 877.672 kb on - strand, within DDA3937_RS03930at 877.672 kb on - strand, within DDA3937_RS03930at 877.672 kb on - strand, within DDA3937_RS03930at 877.672 kb on - strand, within DDA3937_RS03930at 877.675 kb on + strand, within DDA3937_RS03930at 877.676 kb on - strand, within DDA3937_RS03930at 877.676 kb on - strand, within DDA3937_RS03930at 877.685 kb on + strand, within DDA3937_RS03930at 877.685 kb on + strand, within DDA3937_RS03930at 877.685 kb on + strand, within DDA3937_RS03930at 877.686 kb on - strand, within DDA3937_RS03930at 877.686 kb on - strand, within DDA3937_RS03930at 877.696 kb on - strand, within DDA3937_RS03930at 877.696 kb on - strand, within DDA3937_RS03930at 877.722 kb on + strand, within DDA3937_RS03930at 877.722 kb on + strand, within DDA3937_RS03930at 877.783 kb on + strand, within DDA3937_RS03930at 877.783 kb on + strand, within DDA3937_RS03930at 877.893 kb on + strand, within DDA3937_RS03930at 877.893 kb on + strand, within DDA3937_RS03930at 877.893 kb on + strand, within DDA3937_RS03930at 877.894 kb on - strand, within DDA3937_RS03930at 877.894 kb on - strand, within DDA3937_RS03930at 877.894 kb on - strand, within DDA3937_RS03930at 877.894 kb on - strand, within DDA3937_RS03930at 877.894 kb on - strand, within DDA3937_RS03930at 877.894 kb on - strand, within DDA3937_RS03930at 877.974 kb on + strand, within DDA3937_RS03930at 878.010 kb on - strand, within DDA3937_RS03930at 878.010 kb on - strand, within DDA3937_RS03930at 878.102 kb on + strandat 878.102 kb on + strandat 878.103 kb on - strandat 878.148 kb on - strandat 878.148 kb on - strandat 878.158 kb on + strandat 878.195 kb on - strandat 878.247 kb on - strandat 878.306 kb on - strandat 878.371 kb on + strandat 878.456 kb on + strandat 878.537 kb on + strandat 878.541 kb on - strandat 878.560 kb on + strandat 878.682 kb on - strand, within DDA3937_RS03935at 878.702 kb on + strand, within DDA3937_RS03935at 878.775 kb on - strand, within DDA3937_RS03935at 878.800 kb on + strand, within DDA3937_RS03935at 878.801 kb on - strand, within DDA3937_RS03935at 878.816 kb on - strand, within DDA3937_RS03935at 878.828 kb on + strand, within DDA3937_RS03935at 878.829 kb on - strand, within DDA3937_RS03935at 878.833 kb on + strand, within DDA3937_RS03935at 878.834 kb on - strand, within DDA3937_RS03935at 878.837 kb on + strand, within DDA3937_RS03935at 878.838 kb on - strand, within DDA3937_RS03935at 879.346 kb on + strand, within DDA3937_RS03935at 879.444 kb on + strand, within DDA3937_RS03935at 879.445 kb on - strand, within DDA3937_RS03935at 879.487 kb on + strand, within DDA3937_RS03935at 879.493 kb on + strand, within DDA3937_RS03935at 879.493 kb on + strand, within DDA3937_RS03935at 879.527 kb on + strand, within DDA3937_RS03935at 879.683 kb on + strandat 879.756 kb on - strand, within DDA3937_RS21885at 879.767 kb on - strand, within DDA3937_RS21885at 879.787 kb on - strand, within DDA3937_RS21885at 879.789 kb on + strand, within DDA3937_RS21885at 879.917 kb on - strand, within DDA3937_RS21885at 879.975 kb on - strand, within DDA3937_RS21885at 880.140 kb on + strand, within DDA3937_RS21885at 880.141 kb on - strand, within DDA3937_RS21885at 880.154 kb on - strand, within DDA3937_RS21885at 880.201 kb on - strand, within DDA3937_RS21885at 880.242 kb on + strand, within DDA3937_RS21885at 880.243 kb on - strand, within DDA3937_RS21885at 880.369 kb on - strand, within DDA3937_RS21885at 880.543 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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877,559 - DDA3937_RS03930 0.81 -0.5
877,582 + DDA3937_RS03930 0.81 -1.5
877,582 + DDA3937_RS03930 0.81 -1.5
877,583 - DDA3937_RS03930 0.82 +0.2
877,583 - DDA3937_RS03930 0.82 +0.1
877,583 - DDA3937_RS03930 0.82 +0.1
877,622 + DDA3937_RS03930 0.82 +2.2
877,622 + DDA3937_RS03930 0.82 -0.4
877,623 - DDA3937_RS03930 0.82 +0.2
877,664 + DDA3937_RS03930 0.83 -0.2
877,671 + DDA3937_RS03930 0.83 -1.1
877,672 - DDA3937_RS03930 0.83 -1.2
877,672 - DDA3937_RS03930 0.83 -0.3
877,672 - DDA3937_RS03930 0.83 -1.3
877,672 - DDA3937_RS03930 0.83 -1.8
877,675 + DDA3937_RS03930 0.83 -0.2
877,676 - DDA3937_RS03930 0.83 -0.7
877,676 - DDA3937_RS03930 0.83 +0.2
877,685 + DDA3937_RS03930 0.84 +0.1
877,685 + DDA3937_RS03930 0.84 -0.3
877,685 + DDA3937_RS03930 0.84 -0.3
877,686 - DDA3937_RS03930 0.84 -1.8
877,686 - DDA3937_RS03930 0.84 -1.2
877,696 - DDA3937_RS03930 0.84 +2.8
877,696 - DDA3937_RS03930 0.84 -0.6
877,722 + DDA3937_RS03930 0.84 +0.2
877,722 + DDA3937_RS03930 0.84 -1.0
877,783 + DDA3937_RS03930 0.85 +1.1
877,783 + DDA3937_RS03930 0.85 -0.8
877,893 + DDA3937_RS03930 0.88 -0.5
877,893 + DDA3937_RS03930 0.88 -2.0
877,893 + DDA3937_RS03930 0.88 -0.1
877,894 - DDA3937_RS03930 0.88 +1.0
877,894 - DDA3937_RS03930 0.88 +0.2
877,894 - DDA3937_RS03930 0.88 +0.6
877,894 - DDA3937_RS03930 0.88 +0.1
877,894 - DDA3937_RS03930 0.88 -0.4
877,894 - DDA3937_RS03930 0.88 -0.6
877,974 + DDA3937_RS03930 0.89 -0.5
878,010 - DDA3937_RS03930 0.90 +0.7
878,010 - DDA3937_RS03930 0.90 -0.8
878,102 + -0.3
878,102 + +0.8
878,103 - -0.6
878,148 - -0.3
878,148 - +0.1
878,158 + -2.8
878,195 - -1.2
878,247 - -0.8
878,306 - -0.8
878,371 + +0.4
878,456 + -1.2
878,537 + -2.0
878,541 - +2.4
878,560 + -0.5
878,682 - DDA3937_RS03935 0.12 -0.8
878,702 + DDA3937_RS03935 0.14 +0.1
878,775 - DDA3937_RS03935 0.21 -1.4
878,800 + DDA3937_RS03935 0.23 +0.2
878,801 - DDA3937_RS03935 0.23 -0.6
878,816 - DDA3937_RS03935 0.25 -1.1
878,828 + DDA3937_RS03935 0.26 +0.2
878,829 - DDA3937_RS03935 0.26 -0.2
878,833 + DDA3937_RS03935 0.26 -1.3
878,834 - DDA3937_RS03935 0.26 -2.7
878,837 + DDA3937_RS03935 0.27 -1.1
878,838 - DDA3937_RS03935 0.27 -0.5
879,346 + DDA3937_RS03935 0.73 +1.0
879,444 + DDA3937_RS03935 0.82 -0.9
879,445 - DDA3937_RS03935 0.82 -0.4
879,487 + DDA3937_RS03935 0.85 -0.6
879,493 + DDA3937_RS03935 0.86 -0.1
879,493 + DDA3937_RS03935 0.86 -1.7
879,527 + DDA3937_RS03935 0.89 -0.4
879,683 + -2.0
879,756 - DDA3937_RS21885 0.12 -0.2
879,767 - DDA3937_RS21885 0.13 +0.8
879,787 - DDA3937_RS21885 0.15 -0.6
879,789 + DDA3937_RS21885 0.16 +0.6
879,917 - DDA3937_RS21885 0.29 -1.8
879,975 - DDA3937_RS21885 0.35 +0.1
880,140 + DDA3937_RS21885 0.52 -0.3
880,141 - DDA3937_RS21885 0.52 -1.4
880,154 - DDA3937_RS21885 0.54 -0.1
880,201 - DDA3937_RS21885 0.59 -1.3
880,242 + DDA3937_RS21885 0.63 -0.2
880,243 - DDA3937_RS21885 0.63 -0.4
880,369 - DDA3937_RS21885 0.76 -1.2
880,543 - -0.3

Or see this region's nucleotide sequence