Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03755 and DDA3937_RS03760 are separated by 27 nucleotides DDA3937_RS03760 and DDA3937_RS03765 are separated by 246 nucleotides
DDA3937_RS03755: DDA3937_RS03755 - MFS transporter, at 831,912 to 833,126
_RS03755
DDA3937_RS03760: DDA3937_RS03760 - o-succinylbenzoate synthase, at 833,154 to 834,266
_RS03760
DDA3937_RS03765: DDA3937_RS03765 - nucleoside recognition family protein, at 834,513 to 835,445
_RS03765
Position (kb) 833
834
835 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 832.178 kb on + strand, within DDA3937_RS03755 at 832.179 kb on - strand, within DDA3937_RS03755 at 832.179 kb on - strand, within DDA3937_RS03755 at 832.217 kb on - strand, within DDA3937_RS03755 at 832.344 kb on + strand, within DDA3937_RS03755 at 832.344 kb on + strand, within DDA3937_RS03755 at 832.344 kb on + strand, within DDA3937_RS03755 at 832.344 kb on + strand, within DDA3937_RS03755 at 832.345 kb on - strand at 832.345 kb on - strand, within DDA3937_RS03755 at 832.345 kb on - strand, within DDA3937_RS03755 at 832.345 kb on - strand, within DDA3937_RS03755 at 832.345 kb on - strand, within DDA3937_RS03755 at 832.455 kb on + strand, within DDA3937_RS03755 at 832.456 kb on - strand, within DDA3937_RS03755 at 832.456 kb on - strand, within DDA3937_RS03755 at 832.456 kb on - strand, within DDA3937_RS03755 at 832.456 kb on - strand, within DDA3937_RS03755 at 832.456 kb on - strand, within DDA3937_RS03755 at 832.457 kb on + strand, within DDA3937_RS03755 at 832.458 kb on - strand, within DDA3937_RS03755 at 832.458 kb on - strand, within DDA3937_RS03755 at 832.553 kb on - strand, within DDA3937_RS03755 at 832.623 kb on + strand, within DDA3937_RS03755 at 832.666 kb on + strand, within DDA3937_RS03755 at 832.683 kb on + strand, within DDA3937_RS03755 at 832.683 kb on + strand, within DDA3937_RS03755 at 832.683 kb on + strand, within DDA3937_RS03755 at 832.797 kb on + strand, within DDA3937_RS03755 at 832.806 kb on + strand, within DDA3937_RS03755 at 832.806 kb on + strand, within DDA3937_RS03755 at 832.806 kb on + strand, within DDA3937_RS03755 at 832.806 kb on + strand, within DDA3937_RS03755 at 832.807 kb on - strand, within DDA3937_RS03755 at 833.007 kb on + strand at 833.008 kb on - strand at 833.078 kb on + strand at 833.078 kb on + strand at 833.078 kb on + strand at 833.173 kb on + strand at 833.210 kb on + strand at 833.210 kb on + strand at 833.210 kb on + strand at 833.210 kb on + strand at 833.211 kb on - strand at 833.211 kb on - strand at 833.241 kb on + strand at 833.241 kb on + strand at 833.242 kb on - strand at 833.251 kb on + strand at 833.316 kb on + strand, within DDA3937_RS03760 at 833.316 kb on + strand, within DDA3937_RS03760 at 833.317 kb on - strand, within DDA3937_RS03760 at 833.395 kb on + strand, within DDA3937_RS03760 at 833.395 kb on + strand, within DDA3937_RS03760 at 833.395 kb on + strand, within DDA3937_RS03760 at 833.396 kb on - strand, within DDA3937_RS03760 at 833.487 kb on + strand, within DDA3937_RS03760 at 833.488 kb on - strand, within DDA3937_RS03760 at 833.488 kb on - strand, within DDA3937_RS03760 at 833.488 kb on - strand, within DDA3937_RS03760 at 833.557 kb on + strand, within DDA3937_RS03760 at 833.558 kb on - strand, within DDA3937_RS03760 at 833.643 kb on - strand, within DDA3937_RS03760 at 833.643 kb on - strand, within DDA3937_RS03760 at 833.670 kb on + strand, within DDA3937_RS03760 at 833.671 kb on - strand, within DDA3937_RS03760 at 833.671 kb on - strand, within DDA3937_RS03760 at 833.671 kb on - strand, within DDA3937_RS03760 at 833.672 kb on + strand, within DDA3937_RS03760 at 833.672 kb on + strand, within DDA3937_RS03760 at 833.673 kb on - strand, within DDA3937_RS03760 at 833.673 kb on - strand, within DDA3937_RS03760 at 833.673 kb on - strand at 833.705 kb on + strand, within DDA3937_RS03760 at 833.747 kb on + strand, within DDA3937_RS03760 at 833.747 kb on + strand, within DDA3937_RS03760 at 833.775 kb on + strand, within DDA3937_RS03760 at 833.776 kb on - strand, within DDA3937_RS03760 at 833.776 kb on - strand, within DDA3937_RS03760 at 833.836 kb on + strand, within DDA3937_RS03760 at 833.837 kb on - strand, within DDA3937_RS03760 at 833.837 kb on - strand, within DDA3937_RS03760 at 833.936 kb on + strand, within DDA3937_RS03760 at 834.047 kb on + strand, within DDA3937_RS03760 at 834.047 kb on + strand, within DDA3937_RS03760 at 834.048 kb on - strand, within DDA3937_RS03760 at 834.225 kb on + strand at 834.226 kb on - strand at 834.226 kb on - strand at 834.240 kb on + strand at 834.240 kb on + strand at 834.240 kb on + strand at 834.240 kb on + strand at 834.241 kb on - strand at 834.241 kb on - strand at 834.264 kb on + strand at 834.265 kb on - strand at 834.305 kb on + strand at 834.317 kb on + strand at 834.317 kb on + strand at 834.317 kb on + strand at 834.318 kb on - strand at 834.318 kb on - strand at 834.318 kb on - strand at 834.321 kb on + strand at 834.321 kb on + strand at 834.321 kb on + strand at 834.321 kb on + strand at 834.321 kb on + strand at 834.321 kb on + strand at 834.322 kb on - strand at 834.338 kb on + strand at 834.338 kb on + strand at 834.338 kb on + strand at 834.338 kb on + strand at 834.339 kb on - strand at 834.339 kb on - strand at 834.339 kb on - strand at 834.339 kb on - strand at 834.479 kb on + strand at 834.479 kb on + strand at 834.479 kb on + strand at 834.479 kb on + strand at 834.480 kb on - strand at 834.480 kb on - strand at 834.480 kb on - strand at 834.480 kb on - strand at 834.480 kb on - strand at 834.480 kb on - strand at 834.510 kb on + strand at 834.510 kb on + strand at 834.510 kb on + strand at 834.510 kb on + strand at 834.510 kb on + strand at 834.510 kb on + strand at 834.511 kb on - strand at 834.511 kb on - strand at 834.511 kb on - strand at 834.511 kb on - strand at 834.511 kb on - strand at 834.511 kb on - strand at 834.511 kb on - strand at 834.511 kb on - strand at 834.570 kb on + strand at 834.570 kb on + strand at 834.570 kb on + strand at 834.570 kb on + strand at 834.571 kb on - strand at 834.571 kb on - strand at 834.571 kb on - strand at 834.571 kb on - strand at 834.572 kb on + strand at 834.572 kb on + strand at 834.572 kb on + strand at 834.573 kb on - strand at 834.573 kb on - strand at 834.573 kb on - strand at 834.573 kb on - strand at 834.573 kb on - strand at 834.573 kb on - strand at 834.573 kb on - strand at 834.692 kb on + strand, within DDA3937_RS03765 at 834.693 kb on - strand, within DDA3937_RS03765 at 834.792 kb on - strand, within DDA3937_RS03765 at 834.838 kb on + strand, within DDA3937_RS03765 at 834.838 kb on + strand, within DDA3937_RS03765 at 834.838 kb on + strand, within DDA3937_RS03765 at 834.838 kb on + strand at 834.838 kb on + strand, within DDA3937_RS03765 at 834.838 kb on + strand, within DDA3937_RS03765 at 834.838 kb on + strand, within DDA3937_RS03765 at 834.839 kb on - strand at 834.839 kb on - strand, within DDA3937_RS03765 at 834.839 kb on - strand, within DDA3937_RS03765 at 834.886 kb on + strand, within DDA3937_RS03765 at 834.886 kb on + strand, within DDA3937_RS03765 at 834.886 kb on + strand, within DDA3937_RS03765 at 834.887 kb on - strand, within DDA3937_RS03765 at 834.887 kb on - strand, within DDA3937_RS03765 at 834.889 kb on + strand, within DDA3937_RS03765 at 834.927 kb on + strand, within DDA3937_RS03765 at 834.927 kb on + strand, within DDA3937_RS03765 at 834.927 kb on + strand, within DDA3937_RS03765 at 834.927 kb on + strand, within DDA3937_RS03765 at 834.927 kb on + strand, within DDA3937_RS03765 at 834.927 kb on + strand, within DDA3937_RS03765 at 834.928 kb on - strand, within DDA3937_RS03765 at 834.928 kb on - strand, within DDA3937_RS03765 at 834.928 kb on - strand, within DDA3937_RS03765 at 834.928 kb on - strand, within DDA3937_RS03765 at 834.928 kb on - strand, within DDA3937_RS03765 at 834.928 kb on - strand, within DDA3937_RS03765 at 834.928 kb on - strand, within DDA3937_RS03765 at 835.025 kb on + strand, within DDA3937_RS03765 at 835.025 kb on + strand, within DDA3937_RS03765 at 835.026 kb on - strand, within DDA3937_RS03765 at 835.026 kb on - strand, within DDA3937_RS03765 at 835.028 kb on + strand, within DDA3937_RS03765 at 835.088 kb on + strand, within DDA3937_RS03765 at 835.172 kb on + strand at 835.173 kb on - strand, within DDA3937_RS03765 at 835.173 kb on - strand, within DDA3937_RS03765 at 835.230 kb on + strand, within DDA3937_RS03765
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 832,178 + DDA3937_RS03755 0.22 -0.3 832,179 - DDA3937_RS03755 0.22 -0.7 832,179 - DDA3937_RS03755 0.22 -1.0 832,217 - DDA3937_RS03755 0.25 -1.0 832,344 + DDA3937_RS03755 0.36 -1.5 832,344 + DDA3937_RS03755 0.36 -3.2 832,344 + DDA3937_RS03755 0.36 -0.7 832,344 + DDA3937_RS03755 0.36 -0.8 832,345 - +0.1 832,345 - DDA3937_RS03755 0.36 -0.6 832,345 - DDA3937_RS03755 0.36 -0.6 832,345 - DDA3937_RS03755 0.36 +0.0 832,345 - DDA3937_RS03755 0.36 -0.1 832,455 + DDA3937_RS03755 0.45 +0.5 832,456 - DDA3937_RS03755 0.45 +0.5 832,456 - DDA3937_RS03755 0.45 +1.4 832,456 - DDA3937_RS03755 0.45 -0.0 832,456 - DDA3937_RS03755 0.45 +0.2 832,456 - DDA3937_RS03755 0.45 +0.1 832,457 + DDA3937_RS03755 0.45 -0.6 832,458 - DDA3937_RS03755 0.45 +0.0 832,458 - DDA3937_RS03755 0.45 -0.6 832,553 - DDA3937_RS03755 0.53 +0.5 832,623 + DDA3937_RS03755 0.59 -0.1 832,666 + DDA3937_RS03755 0.62 -1.5 832,683 + DDA3937_RS03755 0.63 -0.4 832,683 + DDA3937_RS03755 0.63 -1.8 832,683 + DDA3937_RS03755 0.63 -1.1 832,797 + DDA3937_RS03755 0.73 +1.0 832,806 + DDA3937_RS03755 0.74 +0.4 832,806 + DDA3937_RS03755 0.74 +0.0 832,806 + DDA3937_RS03755 0.74 -1.4 832,806 + DDA3937_RS03755 0.74 -0.5 832,807 - DDA3937_RS03755 0.74 -0.3 833,007 + -0.5 833,008 - +0.8 833,078 + -0.4 833,078 + -1.0 833,078 + -0.9 833,173 + -0.9 833,210 + -0.3 833,210 + -0.6 833,210 + +0.3 833,210 + -0.9 833,211 - +0.1 833,211 - +0.5 833,241 + +0.1 833,241 + -0.5 833,242 - +0.2 833,251 + -1.4 833,316 + DDA3937_RS03760 0.15 -0.4 833,316 + DDA3937_RS03760 0.15 -2.2 833,317 - DDA3937_RS03760 0.15 +0.2 833,395 + DDA3937_RS03760 0.22 +0.5 833,395 + DDA3937_RS03760 0.22 -2.2 833,395 + DDA3937_RS03760 0.22 -1.0 833,396 - DDA3937_RS03760 0.22 -1.5 833,487 + DDA3937_RS03760 0.30 -0.6 833,488 - DDA3937_RS03760 0.30 +1.5 833,488 - DDA3937_RS03760 0.30 +0.1 833,488 - DDA3937_RS03760 0.30 -0.2 833,557 + DDA3937_RS03760 0.36 +0.5 833,558 - DDA3937_RS03760 0.36 +0.1 833,643 - DDA3937_RS03760 0.44 +0.3 833,643 - DDA3937_RS03760 0.44 -0.1 833,670 + DDA3937_RS03760 0.46 +0.5 833,671 - DDA3937_RS03760 0.46 -0.1 833,671 - DDA3937_RS03760 0.46 +0.3 833,671 - DDA3937_RS03760 0.46 +0.8 833,672 + DDA3937_RS03760 0.47 -0.8 833,672 + DDA3937_RS03760 0.47 +1.2 833,673 - DDA3937_RS03760 0.47 +0.2 833,673 - DDA3937_RS03760 0.47 -0.2 833,673 - +1.8 833,705 + DDA3937_RS03760 0.50 +0.0 833,747 + DDA3937_RS03760 0.53 -0.5 833,747 + DDA3937_RS03760 0.53 -0.0 833,775 + DDA3937_RS03760 0.56 +0.1 833,776 - DDA3937_RS03760 0.56 +1.4 833,776 - DDA3937_RS03760 0.56 -0.6 833,836 + DDA3937_RS03760 0.61 -1.2 833,837 - DDA3937_RS03760 0.61 +0.6 833,837 - DDA3937_RS03760 0.61 +0.3 833,936 + DDA3937_RS03760 0.70 +2.1 834,047 + DDA3937_RS03760 0.80 +0.0 834,047 + DDA3937_RS03760 0.80 +0.5 834,048 - DDA3937_RS03760 0.80 -0.2 834,225 + -1.4 834,226 - +2.4 834,226 - -0.2 834,240 + -0.5 834,240 + +0.2 834,240 + +0.5 834,240 + +0.1 834,241 - +0.1 834,241 - +0.8 834,264 + +0.4 834,265 - -1.2 834,305 + -0.3 834,317 + +0.7 834,317 + -0.8 834,317 + -0.0 834,318 - -0.8 834,318 - -0.8 834,318 - -1.1 834,321 + -1.0 834,321 + +0.2 834,321 + -0.3 834,321 + +0.5 834,321 + +0.0 834,321 + +1.2 834,322 - +0.0 834,338 + +0.6 834,338 + -0.5 834,338 + -0.3 834,338 + +0.8 834,339 - -0.9 834,339 - -0.1 834,339 - -0.1 834,339 - +0.4 834,479 + +0.3 834,479 + +1.0 834,479 + -0.5 834,479 + +0.1 834,480 - +2.8 834,480 - +0.8 834,480 - +0.2 834,480 - +0.5 834,480 - +0.3 834,480 - +0.0 834,510 + -0.2 834,510 + -0.1 834,510 + -0.4 834,510 + -0.2 834,510 + +0.1 834,510 + -0.2 834,511 - -0.6 834,511 - +0.2 834,511 - -0.0 834,511 - +0.9 834,511 - -1.8 834,511 - -1.0 834,511 - -0.5 834,511 - -0.0 834,570 + +0.1 834,570 + +0.1 834,570 + -1.1 834,570 + +0.5 834,571 - -0.7 834,571 - +0.2 834,571 - -0.5 834,571 - +1.5 834,572 + -1.5 834,572 + -0.6 834,572 + +0.5 834,573 - +0.2 834,573 - -0.7 834,573 - -0.0 834,573 - -1.1 834,573 - -1.2 834,573 - +1.6 834,573 - -0.4 834,692 + DDA3937_RS03765 0.19 +0.4 834,693 - DDA3937_RS03765 0.19 -0.5 834,792 - DDA3937_RS03765 0.30 +0.6 834,838 + DDA3937_RS03765 0.35 -0.4 834,838 + DDA3937_RS03765 0.35 +0.1 834,838 + DDA3937_RS03765 0.35 -0.0 834,838 + +2.1 834,838 + DDA3937_RS03765 0.35 -0.5 834,838 + DDA3937_RS03765 0.35 +1.4 834,838 + DDA3937_RS03765 0.35 -0.4 834,839 - +0.8 834,839 - DDA3937_RS03765 0.35 +0.1 834,839 - DDA3937_RS03765 0.35 +0.8 834,886 + DDA3937_RS03765 0.40 +0.1 834,886 + DDA3937_RS03765 0.40 +0.3 834,886 + DDA3937_RS03765 0.40 -0.5 834,887 - DDA3937_RS03765 0.40 -0.9 834,887 - DDA3937_RS03765 0.40 +0.8 834,889 + DDA3937_RS03765 0.40 -0.7 834,927 + DDA3937_RS03765 0.44 +0.2 834,927 + DDA3937_RS03765 0.44 +0.4 834,927 + DDA3937_RS03765 0.44 +0.0 834,927 + DDA3937_RS03765 0.44 -0.7 834,927 + DDA3937_RS03765 0.44 +0.9 834,927 + DDA3937_RS03765 0.44 -0.1 834,928 - DDA3937_RS03765 0.44 -0.8 834,928 - DDA3937_RS03765 0.44 +0.0 834,928 - DDA3937_RS03765 0.44 -0.9 834,928 - DDA3937_RS03765 0.44 +2.1 834,928 - DDA3937_RS03765 0.44 +0.5 834,928 - DDA3937_RS03765 0.44 +0.2 834,928 - DDA3937_RS03765 0.44 -0.4 835,025 + DDA3937_RS03765 0.55 +1.5 835,025 + DDA3937_RS03765 0.55 -2.2 835,026 - DDA3937_RS03765 0.55 -0.8 835,026 - DDA3937_RS03765 0.55 -0.1 835,028 + DDA3937_RS03765 0.55 +1.0 835,088 + DDA3937_RS03765 0.62 -0.3 835,172 + +2.4 835,173 - DDA3937_RS03765 0.71 +0.4 835,173 - DDA3937_RS03765 0.71 -0.2 835,230 + DDA3937_RS03765 0.77 +0.2
Or see this region's nucleotide sequence