Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03660 and DDA3937_RS03665 are separated by 212 nucleotides DDA3937_RS03665 and DDA3937_RS03670 are separated by 312 nucleotides
DDA3937_RS03660: DDA3937_RS03660 - 2,5-didehydrogluconate reductase DkgB, at 808,039 to 808,845
_RS03660
DDA3937_RS03665: DDA3937_RS03665 - MurR/RpiR family transcriptional regulator, at 809,058 to 809,915
_RS03665
DDA3937_RS03670: DDA3937_RS03670 - CoA-acylating methylmalonate-semialdehyde dehydrogenase, at 810,228 to 811,739
_RS03670
Position (kb) 809
810 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 808.179 kb on + strand, within DDA3937_RS03660 at 808.278 kb on + strand, within DDA3937_RS03660 at 808.313 kb on + strand, within DDA3937_RS03660 at 808.313 kb on + strand, within DDA3937_RS03660 at 808.314 kb on - strand, within DDA3937_RS03660 at 808.314 kb on - strand, within DDA3937_RS03660 at 808.314 kb on - strand, within DDA3937_RS03660 at 808.314 kb on - strand, within DDA3937_RS03660 at 808.314 kb on - strand, within DDA3937_RS03660 at 808.314 kb on - strand, within DDA3937_RS03660 at 808.314 kb on - strand, within DDA3937_RS03660 at 808.314 kb on - strand, within DDA3937_RS03660 at 808.577 kb on + strand, within DDA3937_RS03660 at 808.578 kb on - strand, within DDA3937_RS03660 at 808.667 kb on + strand, within DDA3937_RS03660 at 808.667 kb on + strand, within DDA3937_RS03660 at 808.668 kb on - strand, within DDA3937_RS03660 at 808.668 kb on - strand, within DDA3937_RS03660 at 808.668 kb on - strand, within DDA3937_RS03660 at 808.731 kb on - strand at 808.731 kb on - strand, within DDA3937_RS03660 at 808.731 kb on - strand, within DDA3937_RS03660 at 808.795 kb on + strand at 808.795 kb on + strand at 808.795 kb on + strand at 808.796 kb on - strand at 808.796 kb on - strand at 808.796 kb on - strand at 808.806 kb on + strand at 808.818 kb on + strand at 808.818 kb on + strand at 808.818 kb on + strand at 808.818 kb on + strand at 808.818 kb on + strand at 808.818 kb on + strand at 808.818 kb on + strand at 808.819 kb on - strand at 808.819 kb on - strand at 808.819 kb on - strand at 808.819 kb on - strand at 808.870 kb on + strand at 808.947 kb on + strand at 808.960 kb on + strand at 808.961 kb on - strand at 808.972 kb on + strand at 808.973 kb on - strand at 808.973 kb on - strand at 809.042 kb on - strand at 809.308 kb on + strand, within DDA3937_RS03665 at 809.309 kb on - strand, within DDA3937_RS03665 at 809.309 kb on - strand, within DDA3937_RS03665 at 809.358 kb on + strand, within DDA3937_RS03665 at 809.358 kb on + strand, within DDA3937_RS03665 at 809.358 kb on + strand, within DDA3937_RS03665 at 809.358 kb on + strand, within DDA3937_RS03665 at 809.359 kb on - strand, within DDA3937_RS03665 at 809.359 kb on - strand, within DDA3937_RS03665 at 809.359 kb on - strand, within DDA3937_RS03665 at 809.359 kb on - strand, within DDA3937_RS03665 at 809.359 kb on - strand, within DDA3937_RS03665 at 809.359 kb on - strand, within DDA3937_RS03665 at 809.359 kb on - strand, within DDA3937_RS03665 at 809.428 kb on + strand, within DDA3937_RS03665 at 809.437 kb on + strand, within DDA3937_RS03665 at 809.437 kb on + strand, within DDA3937_RS03665 at 809.437 kb on + strand, within DDA3937_RS03665 at 809.437 kb on + strand, within DDA3937_RS03665 at 809.437 kb on + strand, within DDA3937_RS03665 at 809.438 kb on - strand, within DDA3937_RS03665 at 809.438 kb on - strand, within DDA3937_RS03665 at 809.438 kb on - strand, within DDA3937_RS03665 at 809.438 kb on - strand, within DDA3937_RS03665 at 809.438 kb on - strand, within DDA3937_RS03665 at 809.438 kb on - strand, within DDA3937_RS03665 at 809.476 kb on + strand, within DDA3937_RS03665 at 809.476 kb on + strand, within DDA3937_RS03665 at 809.476 kb on + strand, within DDA3937_RS03665 at 809.476 kb on + strand, within DDA3937_RS03665 at 809.476 kb on + strand, within DDA3937_RS03665 at 809.476 kb on + strand, within DDA3937_RS03665 at 809.477 kb on - strand, within DDA3937_RS03665 at 809.477 kb on - strand, within DDA3937_RS03665 at 809.477 kb on - strand, within DDA3937_RS03665 at 809.477 kb on - strand, within DDA3937_RS03665 at 809.477 kb on - strand, within DDA3937_RS03665 at 809.653 kb on + strand, within DDA3937_RS03665 at 809.654 kb on - strand, within DDA3937_RS03665 at 809.654 kb on - strand, within DDA3937_RS03665 at 809.654 kb on - strand, within DDA3937_RS03665 at 809.758 kb on - strand, within DDA3937_RS03665 at 809.758 kb on - strand, within DDA3937_RS03665 at 809.810 kb on + strand, within DDA3937_RS03665 at 809.810 kb on + strand, within DDA3937_RS03665 at 809.811 kb on - strand, within DDA3937_RS03665 at 809.824 kb on + strand, within DDA3937_RS03665 at 809.825 kb on - strand, within DDA3937_RS03665 at 809.825 kb on - strand, within DDA3937_RS03665 at 809.825 kb on - strand, within DDA3937_RS03665 at 809.886 kb on + strand at 809.887 kb on - strand at 809.887 kb on - strand at 809.909 kb on + strand at 809.915 kb on + strand at 809.915 kb on + strand at 809.915 kb on + strand at 809.915 kb on + strand at 809.916 kb on - strand at 810.023 kb on - strand at 810.087 kb on - strand at 810.087 kb on - strand at 810.110 kb on - strand at 810.174 kb on - strand at 810.178 kb on + strand at 810.179 kb on - strand at 810.206 kb on - strand at 810.223 kb on + strand at 810.224 kb on - strand at 810.297 kb on + strand at 810.298 kb on - strand at 810.298 kb on - strand at 810.820 kb on + strand, within DDA3937_RS03670 at 810.820 kb on + strand at 810.821 kb on - strand, within DDA3937_RS03670 at 810.824 kb on + strand, within DDA3937_RS03670 at 810.824 kb on + strand, within DDA3937_RS03670 at 810.824 kb on + strand, within DDA3937_RS03670 at 810.825 kb on - strand, within DDA3937_RS03670
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 808,179 + DDA3937_RS03660 0.17 -2.8 808,278 + DDA3937_RS03660 0.30 +0.5 808,313 + DDA3937_RS03660 0.34 -0.1 808,313 + DDA3937_RS03660 0.34 +0.2 808,314 - DDA3937_RS03660 0.34 -0.0 808,314 - DDA3937_RS03660 0.34 -1.8 808,314 - DDA3937_RS03660 0.34 -0.4 808,314 - DDA3937_RS03660 0.34 +0.1 808,314 - DDA3937_RS03660 0.34 +1.1 808,314 - DDA3937_RS03660 0.34 +0.8 808,314 - DDA3937_RS03660 0.34 -0.8 808,314 - DDA3937_RS03660 0.34 -0.9 808,577 + DDA3937_RS03660 0.67 +0.1 808,578 - DDA3937_RS03660 0.67 -0.2 808,667 + DDA3937_RS03660 0.78 -1.8 808,667 + DDA3937_RS03660 0.78 +0.2 808,668 - DDA3937_RS03660 0.78 -0.8 808,668 - DDA3937_RS03660 0.78 +0.6 808,668 - DDA3937_RS03660 0.78 -1.2 808,731 - +0.8 808,731 - DDA3937_RS03660 0.86 +0.8 808,731 - DDA3937_RS03660 0.86 -0.6 808,795 + -0.2 808,795 + +0.2 808,795 + -0.2 808,796 - -1.5 808,796 - -0.2 808,796 - +0.5 808,806 + +0.2 808,818 + +0.6 808,818 + -1.0 808,818 + +0.6 808,818 + -0.0 808,818 + +0.5 808,818 + +0.1 808,818 + -0.3 808,819 - -0.2 808,819 - -0.6 808,819 - +0.0 808,819 - -2.6 808,870 + -1.9 808,947 + +0.4 808,960 + +0.2 808,961 - -0.6 808,972 + +0.2 808,973 - +0.2 808,973 - +1.5 809,042 - -0.2 809,308 + DDA3937_RS03665 0.29 -0.3 809,309 - DDA3937_RS03665 0.29 +0.6 809,309 - DDA3937_RS03665 0.29 +0.1 809,358 + DDA3937_RS03665 0.35 +0.7 809,358 + DDA3937_RS03665 0.35 +0.8 809,358 + DDA3937_RS03665 0.35 -0.3 809,358 + DDA3937_RS03665 0.35 +0.1 809,359 - DDA3937_RS03665 0.35 +1.3 809,359 - DDA3937_RS03665 0.35 +0.6 809,359 - DDA3937_RS03665 0.35 +2.4 809,359 - DDA3937_RS03665 0.35 +0.1 809,359 - DDA3937_RS03665 0.35 +1.2 809,359 - DDA3937_RS03665 0.35 +1.1 809,359 - DDA3937_RS03665 0.35 +1.1 809,428 + DDA3937_RS03665 0.43 +0.8 809,437 + DDA3937_RS03665 0.44 +1.2 809,437 + DDA3937_RS03665 0.44 +1.0 809,437 + DDA3937_RS03665 0.44 +0.5 809,437 + DDA3937_RS03665 0.44 +1.1 809,437 + DDA3937_RS03665 0.44 +0.8 809,438 - DDA3937_RS03665 0.44 +1.0 809,438 - DDA3937_RS03665 0.44 +2.3 809,438 - DDA3937_RS03665 0.44 -0.8 809,438 - DDA3937_RS03665 0.44 +1.3 809,438 - DDA3937_RS03665 0.44 +0.5 809,438 - DDA3937_RS03665 0.44 +1.1 809,476 + DDA3937_RS03665 0.49 +0.7 809,476 + DDA3937_RS03665 0.49 +0.4 809,476 + DDA3937_RS03665 0.49 +1.2 809,476 + DDA3937_RS03665 0.49 +0.8 809,476 + DDA3937_RS03665 0.49 +1.3 809,476 + DDA3937_RS03665 0.49 +0.4 809,477 - DDA3937_RS03665 0.49 +0.9 809,477 - DDA3937_RS03665 0.49 +1.0 809,477 - DDA3937_RS03665 0.49 +0.9 809,477 - DDA3937_RS03665 0.49 +0.6 809,477 - DDA3937_RS03665 0.49 +1.0 809,653 + DDA3937_RS03665 0.69 +1.0 809,654 - DDA3937_RS03665 0.69 +0.9 809,654 - DDA3937_RS03665 0.69 +0.7 809,654 - DDA3937_RS03665 0.69 +1.0 809,758 - DDA3937_RS03665 0.82 +1.1 809,758 - DDA3937_RS03665 0.82 +0.3 809,810 + DDA3937_RS03665 0.88 +1.4 809,810 + DDA3937_RS03665 0.88 +1.4 809,811 - DDA3937_RS03665 0.88 +1.2 809,824 + DDA3937_RS03665 0.89 +0.6 809,825 - DDA3937_RS03665 0.89 +0.6 809,825 - DDA3937_RS03665 0.89 +0.8 809,825 - DDA3937_RS03665 0.89 +1.1 809,886 + +1.5 809,887 - +0.9 809,887 - +0.7 809,909 + +0.5 809,915 + +0.9 809,915 + +1.2 809,915 + +1.2 809,915 + +0.3 809,916 - +0.8 810,023 - -0.5 810,087 - +0.2 810,087 - -0.4 810,110 - -0.4 810,174 - -1.2 810,178 + -1.0 810,179 - +0.3 810,206 - -0.6 810,223 + -0.4 810,224 - -0.2 810,297 + -0.2 810,298 - +0.3 810,298 - +1.4 810,820 + DDA3937_RS03670 0.39 +0.2 810,820 + -0.2 810,821 - DDA3937_RS03670 0.39 -0.9 810,824 + DDA3937_RS03670 0.39 -1.2 810,824 + DDA3937_RS03670 0.39 -0.1 810,824 + DDA3937_RS03670 0.39 -0.2 810,825 - DDA3937_RS03670 0.39 -0.2
Or see this region's nucleotide sequence