Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03645

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS03640 and DDA3937_RS03645 are separated by 82 nucleotidesDDA3937_RS03645 and DDA3937_RS03650 are separated by 43 nucleotides DDA3937_RS03640: DDA3937_RS03640 - iron-containing alcohol dehydrogenase, at 803,090 to 804,244 _RS03640 DDA3937_RS03645: DDA3937_RS03645 - APC family permease, at 804,327 to 805,748 _RS03645 DDA3937_RS03650: DDA3937_RS03650 - MFS transporter, at 805,792 to 806,967 _RS03650 Position (kb) 804 805 806Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 803.426 kb on - strand, within DDA3937_RS03640at 803.426 kb on - strand, within DDA3937_RS03640at 803.426 kb on - strand, within DDA3937_RS03640at 803.444 kb on + strand, within DDA3937_RS03640at 803.444 kb on + strand, within DDA3937_RS03640at 803.656 kb on + strand, within DDA3937_RS03640at 803.705 kb on + strand, within DDA3937_RS03640at 803.705 kb on + strand, within DDA3937_RS03640at 803.705 kb on + strand, within DDA3937_RS03640at 803.706 kb on - strandat 803.706 kb on - strand, within DDA3937_RS03640at 803.706 kb on - strand, within DDA3937_RS03640at 803.903 kb on + strand, within DDA3937_RS03640at 803.903 kb on + strand, within DDA3937_RS03640at 803.904 kb on - strand, within DDA3937_RS03640at 803.904 kb on - strand, within DDA3937_RS03640at 804.075 kb on + strand, within DDA3937_RS03640at 804.076 kb on - strand, within DDA3937_RS03640at 804.076 kb on - strand, within DDA3937_RS03640at 804.242 kb on + strandat 804.242 kb on + strandat 804.242 kb on + strandat 804.243 kb on - strandat 804.250 kb on + strandat 804.250 kb on + strandat 804.250 kb on + strandat 804.250 kb on + strandat 804.250 kb on + strandat 804.250 kb on + strandat 804.250 kb on + strandat 804.250 kb on + strandat 804.251 kb on - strandat 804.251 kb on - strandat 804.251 kb on - strandat 804.251 kb on - strandat 804.251 kb on - strandat 804.251 kb on - strandat 804.253 kb on - strandat 804.253 kb on - strandat 804.474 kb on + strand, within DDA3937_RS03645at 804.474 kb on + strand, within DDA3937_RS03645at 804.474 kb on + strand, within DDA3937_RS03645at 804.474 kb on + strand, within DDA3937_RS03645at 804.474 kb on + strand, within DDA3937_RS03645at 804.474 kb on + strand, within DDA3937_RS03645at 804.474 kb on + strand, within DDA3937_RS03645at 804.474 kb on + strand, within DDA3937_RS03645at 804.474 kb on + strand, within DDA3937_RS03645at 804.474 kb on + strand, within DDA3937_RS03645at 804.474 kb on + strand, within DDA3937_RS03645at 804.475 kb on - strand, within DDA3937_RS03645at 804.475 kb on - strand, within DDA3937_RS03645at 804.475 kb on - strand, within DDA3937_RS03645at 804.475 kb on - strand, within DDA3937_RS03645at 804.475 kb on - strand, within DDA3937_RS03645at 804.475 kb on - strand, within DDA3937_RS03645at 804.475 kb on - strand, within DDA3937_RS03645at 804.475 kb on - strand, within DDA3937_RS03645at 804.475 kb on - strand, within DDA3937_RS03645at 804.475 kb on - strand, within DDA3937_RS03645at 804.475 kb on - strand, within DDA3937_RS03645at 804.475 kb on - strand, within DDA3937_RS03645at 804.475 kb on - strand, within DDA3937_RS03645at 804.475 kb on - strand, within DDA3937_RS03645at 804.475 kb on - strand, within DDA3937_RS03645at 804.516 kb on + strand, within DDA3937_RS03645at 804.516 kb on + strand, within DDA3937_RS03645at 804.516 kb on + strand, within DDA3937_RS03645at 804.517 kb on - strand, within DDA3937_RS03645at 804.517 kb on - strand, within DDA3937_RS03645at 804.517 kb on - strand, within DDA3937_RS03645at 804.517 kb on - strand, within DDA3937_RS03645at 804.519 kb on - strand, within DDA3937_RS03645at 804.534 kb on + strandat 804.535 kb on - strand, within DDA3937_RS03645at 804.559 kb on - strand, within DDA3937_RS03645at 804.564 kb on + strand, within DDA3937_RS03645at 804.564 kb on + strand, within DDA3937_RS03645at 804.564 kb on + strand, within DDA3937_RS03645at 804.564 kb on + strand, within DDA3937_RS03645at 804.565 kb on - strand, within DDA3937_RS03645at 804.565 kb on - strand, within DDA3937_RS03645at 804.565 kb on - strand, within DDA3937_RS03645at 804.565 kb on - strand, within DDA3937_RS03645at 804.565 kb on - strand, within DDA3937_RS03645at 804.627 kb on + strand, within DDA3937_RS03645at 804.627 kb on + strand, within DDA3937_RS03645at 804.681 kb on + strand, within DDA3937_RS03645at 804.681 kb on + strand, within DDA3937_RS03645at 804.681 kb on + strand, within DDA3937_RS03645at 804.681 kb on + strand, within DDA3937_RS03645at 804.681 kb on + strand, within DDA3937_RS03645at 804.681 kb on + strand, within DDA3937_RS03645at 804.681 kb on + strand, within DDA3937_RS03645at 804.681 kb on + strand, within DDA3937_RS03645at 804.681 kb on + strand, within DDA3937_RS03645at 804.681 kb on + strand, within DDA3937_RS03645at 804.681 kb on + strand, within DDA3937_RS03645at 804.682 kb on - strand, within DDA3937_RS03645at 804.682 kb on - strandat 804.682 kb on - strand, within DDA3937_RS03645at 804.682 kb on - strand, within DDA3937_RS03645at 804.682 kb on - strand, within DDA3937_RS03645at 804.682 kb on - strand, within DDA3937_RS03645at 804.682 kb on - strand, within DDA3937_RS03645at 804.723 kb on + strand, within DDA3937_RS03645at 804.724 kb on - strand, within DDA3937_RS03645at 804.724 kb on - strand, within DDA3937_RS03645at 804.754 kb on - strand, within DDA3937_RS03645at 804.754 kb on - strand, within DDA3937_RS03645at 804.890 kb on + strand, within DDA3937_RS03645at 804.978 kb on + strand, within DDA3937_RS03645at 804.979 kb on - strand, within DDA3937_RS03645at 805.013 kb on - strand, within DDA3937_RS03645at 805.089 kb on + strand, within DDA3937_RS03645at 805.090 kb on - strand, within DDA3937_RS03645at 805.329 kb on + strand, within DDA3937_RS03645at 805.329 kb on + strand, within DDA3937_RS03645at 805.329 kb on + strand, within DDA3937_RS03645at 805.329 kb on + strand, within DDA3937_RS03645at 805.329 kb on + strand, within DDA3937_RS03645at 805.330 kb on - strand, within DDA3937_RS03645at 805.330 kb on - strand, within DDA3937_RS03645at 805.369 kb on + strand, within DDA3937_RS03645at 805.372 kb on + strand, within DDA3937_RS03645at 805.372 kb on + strand, within DDA3937_RS03645at 805.472 kb on - strand, within DDA3937_RS03645at 805.641 kb on - strandat 805.641 kb on - strandat 805.731 kb on - strandat 805.731 kb on - strandat 805.731 kb on - strandat 805.780 kb on + strandat 805.802 kb on - strandat 805.850 kb on - strandat 805.953 kb on + strand, within DDA3937_RS03650at 806.003 kb on + strand, within DDA3937_RS03650at 806.004 kb on - strand, within DDA3937_RS03650at 806.004 kb on - strand, within DDA3937_RS03650at 806.027 kb on + strand, within DDA3937_RS03650at 806.027 kb on + strand, within DDA3937_RS03650at 806.027 kb on + strand, within DDA3937_RS03650at 806.027 kb on + strand, within DDA3937_RS03650at 806.027 kb on + strand, within DDA3937_RS03650at 806.028 kb on - strand, within DDA3937_RS03650at 806.028 kb on - strand, within DDA3937_RS03650at 806.028 kb on - strand, within DDA3937_RS03650at 806.045 kb on - strand, within DDA3937_RS03650at 806.096 kb on + strand, within DDA3937_RS03650at 806.154 kb on + strand, within DDA3937_RS03650at 806.154 kb on + strand, within DDA3937_RS03650at 806.343 kb on + strand, within DDA3937_RS03650at 806.351 kb on + strand, within DDA3937_RS03650at 806.351 kb on + strand, within DDA3937_RS03650at 806.351 kb on + strandat 806.453 kb on - strand, within DDA3937_RS03650at 806.684 kb on - strand, within DDA3937_RS03650at 806.696 kb on + strand, within DDA3937_RS03650at 806.696 kb on + strand, within DDA3937_RS03650at 806.696 kb on + strand, within DDA3937_RS03650at 806.697 kb on - strand, within DDA3937_RS03650

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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803,426 - DDA3937_RS03640 0.29 -0.6
803,426 - DDA3937_RS03640 0.29 -0.6
803,426 - DDA3937_RS03640 0.29 +0.3
803,444 + DDA3937_RS03640 0.31 -1.0
803,444 + DDA3937_RS03640 0.31 +0.3
803,656 + DDA3937_RS03640 0.49 +0.6
803,705 + DDA3937_RS03640 0.53 +1.2
803,705 + DDA3937_RS03640 0.53 +2.4
803,705 + DDA3937_RS03640 0.53 -0.5
803,706 - +1.8
803,706 - DDA3937_RS03640 0.53 +0.4
803,706 - DDA3937_RS03640 0.53 -0.5
803,903 + DDA3937_RS03640 0.70 -0.0
803,903 + DDA3937_RS03640 0.70 +0.0
803,904 - DDA3937_RS03640 0.70 +0.2
803,904 - DDA3937_RS03640 0.70 -0.8
804,075 + DDA3937_RS03640 0.85 -1.2
804,076 - DDA3937_RS03640 0.85 +1.1
804,076 - DDA3937_RS03640 0.85 -1.1
804,242 + +0.2
804,242 + +0.3
804,242 + -0.4
804,243 - +1.3
804,250 + -0.9
804,250 + +0.1
804,250 + +0.1
804,250 + +0.4
804,250 + +1.2
804,250 + -0.1
804,250 + +1.5
804,250 + +0.1
804,251 - -1.2
804,251 - -1.9
804,251 - -1.2
804,251 - -0.1
804,251 - -0.2
804,251 - +1.2
804,253 - +0.5
804,253 - -0.5
804,474 + DDA3937_RS03645 0.10 +1.4
804,474 + DDA3937_RS03645 0.10 -0.0
804,474 + DDA3937_RS03645 0.10 -0.6
804,474 + DDA3937_RS03645 0.10 +0.1
804,474 + DDA3937_RS03645 0.10 -0.7
804,474 + DDA3937_RS03645 0.10 +0.8
804,474 + DDA3937_RS03645 0.10 -0.3
804,474 + DDA3937_RS03645 0.10 -0.4
804,474 + DDA3937_RS03645 0.10 +0.7
804,474 + DDA3937_RS03645 0.10 +0.8
804,474 + DDA3937_RS03645 0.10 +0.6
804,475 - DDA3937_RS03645 0.10 +0.7
804,475 - DDA3937_RS03645 0.10 +0.1
804,475 - DDA3937_RS03645 0.10 -0.6
804,475 - DDA3937_RS03645 0.10 -0.4
804,475 - DDA3937_RS03645 0.10 +0.2
804,475 - DDA3937_RS03645 0.10 +1.2
804,475 - DDA3937_RS03645 0.10 +0.1
804,475 - DDA3937_RS03645 0.10 +1.6
804,475 - DDA3937_RS03645 0.10 -1.5
804,475 - DDA3937_RS03645 0.10 +0.4
804,475 - DDA3937_RS03645 0.10 -0.8
804,475 - DDA3937_RS03645 0.10 -1.0
804,475 - DDA3937_RS03645 0.10 -0.3
804,475 - DDA3937_RS03645 0.10 +1.2
804,475 - DDA3937_RS03645 0.10 -1.2
804,516 + DDA3937_RS03645 0.13 +0.9
804,516 + DDA3937_RS03645 0.13 -0.0
804,516 + DDA3937_RS03645 0.13 -0.6
804,517 - DDA3937_RS03645 0.13 -0.5
804,517 - DDA3937_RS03645 0.13 -0.6
804,517 - DDA3937_RS03645 0.13 -0.3
804,517 - DDA3937_RS03645 0.13 -2.5
804,519 - DDA3937_RS03645 0.14 +0.1
804,534 + +1.8
804,535 - DDA3937_RS03645 0.15 -0.3
804,559 - DDA3937_RS03645 0.16 -1.5
804,564 + DDA3937_RS03645 0.17 +0.2
804,564 + DDA3937_RS03645 0.17 +0.9
804,564 + DDA3937_RS03645 0.17 -2.6
804,564 + DDA3937_RS03645 0.17 +0.3
804,565 - DDA3937_RS03645 0.17 -3.1
804,565 - DDA3937_RS03645 0.17 +0.4
804,565 - DDA3937_RS03645 0.17 +0.7
804,565 - DDA3937_RS03645 0.17 +0.8
804,565 - DDA3937_RS03645 0.17 -0.0
804,627 + DDA3937_RS03645 0.21 +0.5
804,627 + DDA3937_RS03645 0.21 -0.8
804,681 + DDA3937_RS03645 0.25 +0.1
804,681 + DDA3937_RS03645 0.25 +1.5
804,681 + DDA3937_RS03645 0.25 +0.6
804,681 + DDA3937_RS03645 0.25 -0.6
804,681 + DDA3937_RS03645 0.25 +0.5
804,681 + DDA3937_RS03645 0.25 +0.5
804,681 + DDA3937_RS03645 0.25 +0.9
804,681 + DDA3937_RS03645 0.25 -0.4
804,681 + DDA3937_RS03645 0.25 +0.6
804,681 + DDA3937_RS03645 0.25 +0.1
804,681 + DDA3937_RS03645 0.25 +0.1
804,682 - DDA3937_RS03645 0.25 -0.6
804,682 - +0.2
804,682 - DDA3937_RS03645 0.25 -0.4
804,682 - DDA3937_RS03645 0.25 -0.9
804,682 - DDA3937_RS03645 0.25 +0.2
804,682 - DDA3937_RS03645 0.25 +0.7
804,682 - DDA3937_RS03645 0.25 -0.2
804,723 + DDA3937_RS03645 0.28 -1.4
804,724 - DDA3937_RS03645 0.28 +0.9
804,724 - DDA3937_RS03645 0.28 +1.4
804,754 - DDA3937_RS03645 0.30 -0.2
804,754 - DDA3937_RS03645 0.30 +0.8
804,890 + DDA3937_RS03645 0.40 -0.1
804,978 + DDA3937_RS03645 0.46 +0.2
804,979 - DDA3937_RS03645 0.46 -1.5
805,013 - DDA3937_RS03645 0.48 -1.0
805,089 + DDA3937_RS03645 0.54 +1.1
805,090 - DDA3937_RS03645 0.54 +0.4
805,329 + DDA3937_RS03645 0.70 -1.2
805,329 + DDA3937_RS03645 0.70 +0.8
805,329 + DDA3937_RS03645 0.70 +0.0
805,329 + DDA3937_RS03645 0.70 +0.3
805,329 + DDA3937_RS03645 0.70 -0.8
805,330 - DDA3937_RS03645 0.71 -0.3
805,330 - DDA3937_RS03645 0.71 +0.2
805,369 + DDA3937_RS03645 0.73 +0.2
805,372 + DDA3937_RS03645 0.73 -1.0
805,372 + DDA3937_RS03645 0.73 -0.9
805,472 - DDA3937_RS03645 0.81 -0.4
805,641 - +1.3
805,641 - -0.2
805,731 - -1.0
805,731 - +0.0
805,731 - +0.0
805,780 + -0.9
805,802 - -0.9
805,850 - -0.9
805,953 + DDA3937_RS03650 0.14 +0.6
806,003 + DDA3937_RS03650 0.18 -0.1
806,004 - DDA3937_RS03650 0.18 +0.4
806,004 - DDA3937_RS03650 0.18 +0.1
806,027 + DDA3937_RS03650 0.20 +2.3
806,027 + DDA3937_RS03650 0.20 +0.5
806,027 + DDA3937_RS03650 0.20 -2.4
806,027 + DDA3937_RS03650 0.20 +0.4
806,027 + DDA3937_RS03650 0.20 +0.5
806,028 - DDA3937_RS03650 0.20 +2.1
806,028 - DDA3937_RS03650 0.20 +1.0
806,028 - DDA3937_RS03650 0.20 +0.6
806,045 - DDA3937_RS03650 0.22 -0.1
806,096 + DDA3937_RS03650 0.26 +0.2
806,154 + DDA3937_RS03650 0.31 -1.2
806,154 + DDA3937_RS03650 0.31 -0.7
806,343 + DDA3937_RS03650 0.47 -0.6
806,351 + DDA3937_RS03650 0.48 -0.2
806,351 + DDA3937_RS03650 0.48 +0.6
806,351 + -0.2
806,453 - DDA3937_RS03650 0.56 +0.1
806,684 - DDA3937_RS03650 0.76 +1.1
806,696 + DDA3937_RS03650 0.77 +0.1
806,696 + DDA3937_RS03650 0.77 -0.9
806,696 + DDA3937_RS03650 0.77 -0.4
806,697 - DDA3937_RS03650 0.77 +1.0

Or see this region's nucleotide sequence