Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03575 and DDA3937_RS03580 are separated by 542 nucleotides DDA3937_RS03580 and DDA3937_RS03585 are separated by 149 nucleotides DDA3937_RS03585 and DDA3937_RS03590 are separated by 24 nucleotides
DDA3937_RS03575: DDA3937_RS03575 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 787,665 to 791,198
_RS03575
DDA3937_RS03580: DDA3937_RS03580 - hypothetical protein, at 791,741 to 792,163
_RS03580
DDA3937_RS03585: DDA3937_RS03585 - GNAT family N-acetyltransferase, at 792,313 to 792,858
_RS03585
DDA3937_RS03590: DDA3937_RS03590 - LysE family transporter, at 792,883 to 793,506
_RS03590
Position (kb) 791
792
793 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 790.918 kb on + strand at 790.919 kb on - strand at 790.958 kb on + strand at 790.958 kb on + strand at 790.958 kb on + strand at 790.959 kb on - strand at 790.959 kb on - strand at 790.987 kb on - strand at 790.987 kb on - strand at 791.048 kb on + strand at 791.049 kb on - strand at 791.060 kb on + strand at 791.060 kb on + strand at 791.060 kb on + strand at 791.060 kb on + strand at 791.061 kb on - strand at 791.061 kb on - strand at 791.128 kb on + strand at 791.128 kb on + strand at 791.128 kb on + strand at 791.128 kb on + strand at 791.129 kb on - strand at 791.129 kb on - strand at 791.132 kb on + strand at 791.132 kb on + strand at 791.132 kb on + strand at 791.132 kb on + strand at 791.133 kb on - strand at 791.139 kb on - strand at 791.139 kb on - strand at 791.139 kb on - strand at 791.180 kb on + strand at 791.181 kb on - strand at 791.203 kb on + strand at 791.203 kb on + strand at 791.203 kb on + strand at 791.204 kb on - strand at 791.204 kb on - strand at 791.204 kb on - strand at 791.204 kb on - strand at 791.204 kb on - strand at 791.280 kb on + strand at 791.281 kb on - strand at 791.282 kb on + strand at 791.283 kb on - strand at 791.309 kb on + strand at 791.310 kb on - strand at 791.310 kb on - strand at 791.333 kb on + strand at 791.333 kb on + strand at 791.333 kb on + strand at 791.333 kb on + strand at 791.334 kb on - strand at 791.336 kb on + strand at 791.337 kb on - strand at 791.345 kb on - strand at 791.422 kb on + strand at 791.423 kb on - strand at 791.437 kb on - strand at 791.454 kb on + strand at 791.454 kb on + strand at 791.454 kb on + strand at 791.454 kb on + strand at 791.455 kb on - strand at 791.455 kb on - strand at 791.455 kb on - strand at 791.461 kb on - strand at 791.463 kb on + strand at 791.464 kb on - strand at 791.474 kb on + strand at 791.474 kb on + strand at 791.474 kb on + strand at 791.474 kb on + strand at 791.474 kb on + strand at 791.474 kb on + strand at 791.474 kb on + strand at 791.475 kb on - strand at 791.475 kb on - strand at 791.475 kb on - strand at 791.475 kb on - strand at 791.475 kb on - strand at 791.476 kb on + strand at 791.476 kb on + strand at 791.476 kb on + strand at 791.476 kb on + strand at 791.476 kb on + strand at 791.477 kb on - strand at 791.477 kb on - strand at 791.477 kb on - strand at 791.483 kb on + strand at 791.483 kb on + strand at 791.483 kb on + strand at 791.483 kb on + strand at 791.483 kb on + strand at 791.483 kb on + strand at 791.483 kb on + strand at 791.484 kb on - strand at 791.484 kb on - strand at 791.484 kb on - strand at 791.486 kb on + strand at 791.486 kb on + strand at 791.486 kb on + strand at 791.486 kb on + strand at 791.487 kb on - strand at 791.491 kb on + strand at 791.491 kb on + strand at 791.492 kb on - strand at 791.584 kb on - strand at 791.584 kb on - strand at 791.584 kb on - strand at 791.678 kb on + strand at 791.678 kb on + strand at 791.678 kb on + strand at 791.679 kb on - strand at 791.679 kb on - strand at 791.679 kb on - strand at 791.679 kb on - strand at 791.689 kb on + strand at 791.690 kb on - strand at 791.690 kb on - strand at 791.740 kb on + strand at 791.740 kb on + strand at 791.740 kb on + strand at 791.740 kb on + strand at 791.740 kb on + strand at 791.740 kb on + strand at 791.740 kb on + strand at 791.741 kb on - strand at 791.741 kb on - strand at 791.775 kb on + strand at 791.776 kb on - strand at 791.801 kb on + strand, within DDA3937_RS03580 at 791.827 kb on + strand, within DDA3937_RS03580 at 791.827 kb on + strand, within DDA3937_RS03580 at 791.827 kb on + strand, within DDA3937_RS03580 at 791.827 kb on + strand, within DDA3937_RS03580 at 791.827 kb on + strand, within DDA3937_RS03580 at 791.828 kb on - strand, within DDA3937_RS03580 at 791.828 kb on - strand, within DDA3937_RS03580 at 791.828 kb on - strand, within DDA3937_RS03580 at 791.828 kb on - strand, within DDA3937_RS03580 at 791.852 kb on + strand, within DDA3937_RS03580 at 791.854 kb on + strand, within DDA3937_RS03580 at 791.854 kb on + strand, within DDA3937_RS03580 at 791.855 kb on - strand, within DDA3937_RS03580 at 791.855 kb on - strand, within DDA3937_RS03580 at 791.855 kb on - strand, within DDA3937_RS03580 at 791.855 kb on - strand, within DDA3937_RS03580 at 791.855 kb on - strand, within DDA3937_RS03580 at 791.872 kb on - strand, within DDA3937_RS03580 at 791.914 kb on + strand, within DDA3937_RS03580 at 791.914 kb on + strand, within DDA3937_RS03580 at 791.915 kb on - strand, within DDA3937_RS03580 at 791.915 kb on - strand, within DDA3937_RS03580 at 791.915 kb on - strand, within DDA3937_RS03580 at 791.915 kb on - strand, within DDA3937_RS03580 at 791.918 kb on + strand, within DDA3937_RS03580 at 791.918 kb on + strand, within DDA3937_RS03580 at 791.918 kb on + strand, within DDA3937_RS03580 at 791.918 kb on + strand, within DDA3937_RS03580 at 792.046 kb on - strand, within DDA3937_RS03580 at 792.107 kb on + strand, within DDA3937_RS03580 at 792.107 kb on + strand, within DDA3937_RS03580 at 792.108 kb on - strand, within DDA3937_RS03580 at 792.116 kb on + strand, within DDA3937_RS03580 at 792.116 kb on + strand, within DDA3937_RS03580 at 792.155 kb on + strand at 792.155 kb on + strand at 792.155 kb on + strand at 792.155 kb on + strand at 792.155 kb on + strand at 792.155 kb on + strand at 792.156 kb on - strand at 792.156 kb on - strand at 792.197 kb on + strand at 792.197 kb on + strand at 792.198 kb on - strand at 792.278 kb on + strand at 792.278 kb on + strand at 792.324 kb on + strand at 792.324 kb on + strand at 792.400 kb on - strand, within DDA3937_RS03585 at 792.400 kb on - strand, within DDA3937_RS03585 at 792.400 kb on - strand, within DDA3937_RS03585 at 792.400 kb on - strand, within DDA3937_RS03585 at 792.400 kb on - strand, within DDA3937_RS03585 at 792.400 kb on - strand, within DDA3937_RS03585 at 792.400 kb on - strand, within DDA3937_RS03585 at 792.400 kb on - strand, within DDA3937_RS03585 at 792.400 kb on - strand, within DDA3937_RS03585 at 792.400 kb on - strand, within DDA3937_RS03585 at 792.483 kb on - strand, within DDA3937_RS03585 at 792.517 kb on + strand, within DDA3937_RS03585 at 792.517 kb on + strand, within DDA3937_RS03585 at 792.676 kb on - strand at 792.688 kb on - strand, within DDA3937_RS03585 at 792.701 kb on - strand, within DDA3937_RS03585 at 792.823 kb on + strand at 792.823 kb on + strand at 792.823 kb on + strand at 792.824 kb on - strand at 792.824 kb on - strand at 792.840 kb on + strand at 792.840 kb on + strand at 792.841 kb on - strand at 792.854 kb on + strand at 792.854 kb on + strand at 792.854 kb on + strand at 792.854 kb on + strand at 792.854 kb on + strand at 792.854 kb on + strand at 792.854 kb on + strand at 792.855 kb on - strand at 792.855 kb on - strand at 792.855 kb on - strand at 792.855 kb on - strand at 792.855 kb on - strand at 792.856 kb on + strand at 792.856 kb on + strand at 792.856 kb on + strand at 792.857 kb on - strand at 792.857 kb on - strand at 792.884 kb on + strand at 792.884 kb on + strand at 792.884 kb on + strand at 792.965 kb on + strand, within DDA3937_RS03590 at 792.965 kb on + strand, within DDA3937_RS03590 at 792.966 kb on - strand, within DDA3937_RS03590 at 792.966 kb on - strand, within DDA3937_RS03590 at 793.058 kb on + strand, within DDA3937_RS03590 at 793.058 kb on + strand, within DDA3937_RS03590 at 793.058 kb on + strand, within DDA3937_RS03590 at 793.059 kb on - strand, within DDA3937_RS03590 at 793.059 kb on - strand, within DDA3937_RS03590 at 793.099 kb on + strand, within DDA3937_RS03590 at 793.100 kb on - strand, within DDA3937_RS03590
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 790,918 + -1.2 790,919 - -0.5 790,958 + +0.1 790,958 + -2.9 790,958 + -0.0 790,959 - -0.4 790,959 - -1.4 790,987 - -1.2 790,987 - +0.9 791,048 + +0.1 791,049 - -0.2 791,060 + -0.2 791,060 + +0.4 791,060 + +0.2 791,060 + -0.5 791,061 - -0.0 791,061 - -0.0 791,128 + -0.4 791,128 + -0.6 791,128 + -0.5 791,128 + -1.9 791,129 - -2.4 791,129 - -0.9 791,132 + -0.8 791,132 + -1.8 791,132 + +0.2 791,132 + -0.9 791,133 - +0.5 791,139 - +0.6 791,139 - -0.2 791,139 - -0.0 791,180 + -0.5 791,181 - -1.0 791,203 + +1.6 791,203 + +0.1 791,203 + +0.7 791,204 - +0.8 791,204 - +0.6 791,204 - -2.2 791,204 - +0.4 791,204 - +0.6 791,280 + +0.4 791,281 - +0.8 791,282 + +0.1 791,283 - -0.3 791,309 + +0.8 791,310 - -0.9 791,310 - -0.4 791,333 + +0.4 791,333 + +0.5 791,333 + +0.4 791,333 + -1.8 791,334 - +0.1 791,336 + +0.4 791,337 - +1.4 791,345 - -0.7 791,422 + +0.6 791,423 - +0.3 791,437 - -0.3 791,454 + -1.0 791,454 + -1.0 791,454 + +0.4 791,454 + -0.2 791,455 - -1.0 791,455 - -1.0 791,455 - -0.2 791,461 - -1.1 791,463 + +0.2 791,464 - +0.1 791,474 + -1.6 791,474 + +1.1 791,474 + -0.2 791,474 + +0.2 791,474 + +0.1 791,474 + +0.2 791,474 + +0.5 791,475 - -0.7 791,475 - -0.2 791,475 - -0.6 791,475 - -1.8 791,475 - +0.5 791,476 + -0.4 791,476 + -0.1 791,476 + -0.1 791,476 + +0.8 791,476 + -0.9 791,477 - +0.1 791,477 - +1.5 791,477 - +0.5 791,483 + +0.9 791,483 + +0.6 791,483 + -0.2 791,483 + -0.1 791,483 + -0.6 791,483 + -0.2 791,483 + -2.0 791,484 - -0.2 791,484 - -0.2 791,484 - -2.2 791,486 + +0.8 791,486 + -0.2 791,486 + +0.7 791,486 + -1.8 791,487 - +0.3 791,491 + -0.2 791,491 + +0.1 791,492 - -0.3 791,584 - -0.8 791,584 - -1.5 791,584 - +0.6 791,678 + -0.2 791,678 + -0.6 791,678 + +0.0 791,679 - +0.2 791,679 - -0.6 791,679 - -0.5 791,679 - -1.5 791,689 + -0.2 791,690 - -0.6 791,690 - -1.3 791,740 + +0.2 791,740 + -0.2 791,740 + +0.0 791,740 + -0.6 791,740 + -0.2 791,740 + -0.8 791,740 + +0.7 791,741 - -0.0 791,741 - -0.2 791,775 + -1.0 791,776 - -0.2 791,801 + DDA3937_RS03580 0.14 -0.4 791,827 + DDA3937_RS03580 0.20 +0.2 791,827 + DDA3937_RS03580 0.20 -0.5 791,827 + DDA3937_RS03580 0.20 +0.1 791,827 + DDA3937_RS03580 0.20 +2.1 791,827 + DDA3937_RS03580 0.20 -1.2 791,828 - DDA3937_RS03580 0.21 -0.1 791,828 - DDA3937_RS03580 0.21 -1.9 791,828 - DDA3937_RS03580 0.21 -1.3 791,828 - DDA3937_RS03580 0.21 +1.6 791,852 + DDA3937_RS03580 0.26 -1.0 791,854 + DDA3937_RS03580 0.27 -0.2 791,854 + DDA3937_RS03580 0.27 -0.6 791,855 - DDA3937_RS03580 0.27 +0.2 791,855 - DDA3937_RS03580 0.27 -1.0 791,855 - DDA3937_RS03580 0.27 +0.2 791,855 - DDA3937_RS03580 0.27 -0.6 791,855 - DDA3937_RS03580 0.27 -0.2 791,872 - DDA3937_RS03580 0.31 +0.5 791,914 + DDA3937_RS03580 0.41 -1.5 791,914 + DDA3937_RS03580 0.41 -0.3 791,915 - DDA3937_RS03580 0.41 +0.8 791,915 - DDA3937_RS03580 0.41 -0.2 791,915 - DDA3937_RS03580 0.41 -0.3 791,915 - DDA3937_RS03580 0.41 -0.3 791,918 + DDA3937_RS03580 0.42 -0.3 791,918 + DDA3937_RS03580 0.42 +0.5 791,918 + DDA3937_RS03580 0.42 -0.4 791,918 + DDA3937_RS03580 0.42 -0.8 792,046 - DDA3937_RS03580 0.72 +0.2 792,107 + DDA3937_RS03580 0.87 -1.3 792,107 + DDA3937_RS03580 0.87 -0.1 792,108 - DDA3937_RS03580 0.87 -1.6 792,116 + DDA3937_RS03580 0.89 -1.2 792,116 + DDA3937_RS03580 0.89 -0.4 792,155 + -0.6 792,155 + -1.8 792,155 + -0.1 792,155 + -0.8 792,155 + -1.5 792,155 + +0.2 792,156 - -0.3 792,156 - +0.2 792,197 + +0.2 792,197 + -0.6 792,198 - -1.2 792,278 + -0.3 792,278 + -2.1 792,324 + -0.4 792,324 + -1.4 792,400 - DDA3937_RS03585 0.16 -0.8 792,400 - DDA3937_RS03585 0.16 -1.2 792,400 - DDA3937_RS03585 0.16 -0.4 792,400 - DDA3937_RS03585 0.16 -0.2 792,400 - DDA3937_RS03585 0.16 -0.5 792,400 - DDA3937_RS03585 0.16 -0.1 792,400 - DDA3937_RS03585 0.16 +1.3 792,400 - DDA3937_RS03585 0.16 -1.0 792,400 - DDA3937_RS03585 0.16 +1.2 792,400 - DDA3937_RS03585 0.16 -0.4 792,483 - DDA3937_RS03585 0.31 +0.6 792,517 + DDA3937_RS03585 0.37 -0.0 792,517 + DDA3937_RS03585 0.37 -0.2 792,676 - -0.8 792,688 - DDA3937_RS03585 0.69 +0.5 792,701 - DDA3937_RS03585 0.71 -0.6 792,823 + -0.6 792,823 + +0.2 792,823 + -0.8 792,824 - -0.2 792,824 - -0.9 792,840 + +0.8 792,840 + +1.3 792,841 - +0.3 792,854 + -0.8 792,854 + +0.8 792,854 + -0.2 792,854 + +0.1 792,854 + +0.0 792,854 + -0.6 792,854 + +0.1 792,855 - +1.4 792,855 - +0.4 792,855 - -0.5 792,855 - -0.5 792,855 - -0.2 792,856 + -0.4 792,856 + +0.4 792,856 + +0.1 792,857 - -0.6 792,857 - +0.4 792,884 + -0.8 792,884 + -0.1 792,884 + +0.4 792,965 + DDA3937_RS03590 0.13 +0.1 792,965 + DDA3937_RS03590 0.13 -0.2 792,966 - DDA3937_RS03590 0.13 -0.2 792,966 - DDA3937_RS03590 0.13 +0.1 793,058 + DDA3937_RS03590 0.28 +0.6 793,058 + DDA3937_RS03590 0.28 -0.1 793,058 + DDA3937_RS03590 0.28 -0.2 793,059 - DDA3937_RS03590 0.28 -1.5 793,059 - DDA3937_RS03590 0.28 -0.6 793,099 + DDA3937_RS03590 0.35 -0.4 793,100 - DDA3937_RS03590 0.35 +0.7
Or see this region's nucleotide sequence