Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03505 and DDA3937_RS03510 overlap by 4 nucleotides DDA3937_RS03510 and DDA3937_RS03515 are separated by 1 nucleotides DDA3937_RS03515 and DDA3937_RS03520 are separated by 42 nucleotides DDA3937_RS03520 and DDA3937_RS03525 are separated by 148 nucleotides
DDA3937_RS03505: DDA3937_RS03505 - ABC transporter permease, at 771,642 to 772,700
_RS03505
DDA3937_RS03510: DDA3937_RS03510 - ABC transporter permease, at 772,697 to 773,602
_RS03510
DDA3937_RS03515: DDA3937_RS03515 - ATP-binding cassette domain-containing protein, at 773,604 to 774,467
_RS03515
DDA3937_RS03520: DDA3937_RS03520 - ABC transporter ATP-binding protein, at 774,510 to 775,283
_RS03520
DDA3937_RS03525: DDA3937_RS03525 - sigma-70 family RNA polymerase sigma factor, at 775,432 to 775,968
_RS03525
Position (kb) 773
774
775 Strain fitness (log2 ratio) -2
-1
0
1
2 at 772.668 kb on + strand at 772.668 kb on + strand at 772.668 kb on + strand at 772.696 kb on + strand at 772.696 kb on + strand at 772.696 kb on + strand at 772.697 kb on - strand at 772.821 kb on + strand, within DDA3937_RS03510 at 772.912 kb on + strand, within DDA3937_RS03510 at 772.912 kb on + strand, within DDA3937_RS03510 at 772.912 kb on + strand, within DDA3937_RS03510 at 772.912 kb on + strand, within DDA3937_RS03510 at 772.975 kb on + strand, within DDA3937_RS03510 at 772.975 kb on + strand, within DDA3937_RS03510 at 772.976 kb on - strand, within DDA3937_RS03510 at 772.976 kb on - strand, within DDA3937_RS03510 at 772.988 kb on + strand, within DDA3937_RS03510 at 772.989 kb on - strand, within DDA3937_RS03510 at 772.989 kb on - strand, within DDA3937_RS03510 at 772.989 kb on - strand, within DDA3937_RS03510 at 773.009 kb on + strand, within DDA3937_RS03510 at 773.009 kb on + strand, within DDA3937_RS03510 at 773.009 kb on + strand, within DDA3937_RS03510 at 773.009 kb on + strand, within DDA3937_RS03510 at 773.009 kb on + strand, within DDA3937_RS03510 at 773.009 kb on + strand, within DDA3937_RS03510 at 773.009 kb on + strand, within DDA3937_RS03510 at 773.009 kb on + strand, within DDA3937_RS03510 at 773.009 kb on + strand, within DDA3937_RS03510 at 773.009 kb on + strand, within DDA3937_RS03510 at 773.010 kb on - strand, within DDA3937_RS03510 at 773.010 kb on - strand, within DDA3937_RS03510 at 773.010 kb on - strand, within DDA3937_RS03510 at 773.010 kb on - strand, within DDA3937_RS03510 at 773.010 kb on - strand, within DDA3937_RS03510 at 773.010 kb on - strand, within DDA3937_RS03510 at 773.010 kb on - strand, within DDA3937_RS03510 at 773.010 kb on - strand, within DDA3937_RS03510 at 773.010 kb on - strand, within DDA3937_RS03510 at 773.011 kb on + strand, within DDA3937_RS03510 at 773.078 kb on + strand, within DDA3937_RS03510 at 773.110 kb on + strand, within DDA3937_RS03510 at 773.111 kb on - strand, within DDA3937_RS03510 at 773.111 kb on - strand, within DDA3937_RS03510 at 773.206 kb on + strand, within DDA3937_RS03510 at 773.206 kb on + strand, within DDA3937_RS03510 at 773.206 kb on + strand, within DDA3937_RS03510 at 773.206 kb on + strand, within DDA3937_RS03510 at 773.207 kb on - strand, within DDA3937_RS03510 at 773.571 kb on + strand at 773.571 kb on + strand at 773.571 kb on + strand at 773.572 kb on - strand at 773.572 kb on - strand at 773.600 kb on + strand at 773.622 kb on - strand at 773.876 kb on + strand, within DDA3937_RS03515 at 773.912 kb on + strand, within DDA3937_RS03515 at 773.912 kb on + strand, within DDA3937_RS03515 at 773.912 kb on + strand, within DDA3937_RS03515 at 773.928 kb on + strand, within DDA3937_RS03515 at 773.928 kb on + strand, within DDA3937_RS03515 at 773.928 kb on + strand, within DDA3937_RS03515 at 773.977 kb on - strand, within DDA3937_RS03515 at 774.069 kb on + strand, within DDA3937_RS03515 at 774.069 kb on + strand, within DDA3937_RS03515 at 774.070 kb on - strand, within DDA3937_RS03515 at 774.116 kb on + strand, within DDA3937_RS03515 at 774.116 kb on + strand, within DDA3937_RS03515 at 774.117 kb on - strand, within DDA3937_RS03515 at 774.117 kb on - strand, within DDA3937_RS03515 at 774.138 kb on - strand, within DDA3937_RS03515 at 774.138 kb on - strand, within DDA3937_RS03515 at 774.257 kb on + strand, within DDA3937_RS03515 at 774.312 kb on + strand, within DDA3937_RS03515 at 774.312 kb on + strand, within DDA3937_RS03515 at 774.312 kb on + strand, within DDA3937_RS03515 at 774.313 kb on - strand, within DDA3937_RS03515 at 774.313 kb on - strand, within DDA3937_RS03515 at 774.313 kb on - strand, within DDA3937_RS03515 at 774.372 kb on + strand at 774.372 kb on + strand, within DDA3937_RS03515 at 774.372 kb on + strand, within DDA3937_RS03515 at 774.372 kb on + strand, within DDA3937_RS03515 at 774.372 kb on + strand, within DDA3937_RS03515 at 774.372 kb on + strand, within DDA3937_RS03515 at 774.373 kb on - strand, within DDA3937_RS03515 at 774.373 kb on - strand, within DDA3937_RS03515 at 774.477 kb on - strand at 774.477 kb on - strand at 774.477 kb on - strand at 774.573 kb on + strand at 774.573 kb on + strand at 774.573 kb on + strand at 774.573 kb on + strand at 774.573 kb on + strand at 774.574 kb on - strand at 774.574 kb on - strand at 774.574 kb on - strand at 774.574 kb on - strand at 774.574 kb on - strand at 774.574 kb on - strand at 774.580 kb on + strand at 774.581 kb on - strand at 774.581 kb on - strand at 774.694 kb on + strand, within DDA3937_RS03520 at 774.695 kb on - strand, within DDA3937_RS03520 at 774.695 kb on - strand, within DDA3937_RS03520 at 774.695 kb on - strand, within DDA3937_RS03520 at 774.760 kb on + strand, within DDA3937_RS03520 at 774.761 kb on - strand, within DDA3937_RS03520 at 774.830 kb on - strand, within DDA3937_RS03520 at 774.866 kb on + strand, within DDA3937_RS03520 at 774.871 kb on + strand, within DDA3937_RS03520 at 775.083 kb on + strand, within DDA3937_RS03520 at 775.083 kb on + strand, within DDA3937_RS03520 at 775.084 kb on - strand, within DDA3937_RS03520 at 775.084 kb on - strand, within DDA3937_RS03520 at 775.084 kb on - strand, within DDA3937_RS03520 at 775.149 kb on + strand, within DDA3937_RS03520 at 775.150 kb on - strand, within DDA3937_RS03520 at 775.158 kb on - strand, within DDA3937_RS03520 at 775.196 kb on + strand, within DDA3937_RS03520 at 775.197 kb on - strand at 775.214 kb on + strand at 775.215 kb on - strand at 775.215 kb on - strand at 775.245 kb on + strand at 775.245 kb on + strand at 775.246 kb on - strand at 775.246 kb on - strand at 775.282 kb on - strand at 775.310 kb on + strand at 775.310 kb on + strand at 775.310 kb on + strand at 775.310 kb on + strand at 775.311 kb on - strand at 775.311 kb on - strand at 775.311 kb on - strand at 775.313 kb on + strand at 775.314 kb on - strand at 775.348 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 772,668 + +0.8 772,668 + -0.1 772,668 + +0.2 772,696 + -0.2 772,696 + +0.3 772,696 + -0.6 772,697 - +0.8 772,821 + DDA3937_RS03510 0.14 -1.0 772,912 + DDA3937_RS03510 0.24 +0.6 772,912 + DDA3937_RS03510 0.24 -1.5 772,912 + DDA3937_RS03510 0.24 -0.4 772,912 + DDA3937_RS03510 0.24 -0.2 772,975 + DDA3937_RS03510 0.31 +0.8 772,975 + DDA3937_RS03510 0.31 -0.2 772,976 - DDA3937_RS03510 0.31 +0.4 772,976 - DDA3937_RS03510 0.31 +1.0 772,988 + DDA3937_RS03510 0.32 +0.1 772,989 - DDA3937_RS03510 0.32 +0.4 772,989 - DDA3937_RS03510 0.32 -0.1 772,989 - DDA3937_RS03510 0.32 -0.1 773,009 + DDA3937_RS03510 0.34 -0.4 773,009 + DDA3937_RS03510 0.34 -0.9 773,009 + DDA3937_RS03510 0.34 +0.8 773,009 + DDA3937_RS03510 0.34 -0.4 773,009 + DDA3937_RS03510 0.34 -0.2 773,009 + DDA3937_RS03510 0.34 -0.9 773,009 + DDA3937_RS03510 0.34 -0.6 773,009 + DDA3937_RS03510 0.34 +0.3 773,009 + DDA3937_RS03510 0.34 +0.2 773,009 + DDA3937_RS03510 0.34 -0.5 773,010 - DDA3937_RS03510 0.35 -0.3 773,010 - DDA3937_RS03510 0.35 -1.5 773,010 - DDA3937_RS03510 0.35 +0.1 773,010 - DDA3937_RS03510 0.35 +0.2 773,010 - DDA3937_RS03510 0.35 +0.5 773,010 - DDA3937_RS03510 0.35 -0.9 773,010 - DDA3937_RS03510 0.35 -0.7 773,010 - DDA3937_RS03510 0.35 +1.8 773,010 - DDA3937_RS03510 0.35 -0.2 773,011 + DDA3937_RS03510 0.35 +0.1 773,078 + DDA3937_RS03510 0.42 -0.2 773,110 + DDA3937_RS03510 0.46 -0.4 773,111 - DDA3937_RS03510 0.46 -1.6 773,111 - DDA3937_RS03510 0.46 +0.0 773,206 + DDA3937_RS03510 0.56 -0.5 773,206 + DDA3937_RS03510 0.56 +0.2 773,206 + DDA3937_RS03510 0.56 +0.1 773,206 + DDA3937_RS03510 0.56 -0.6 773,207 - DDA3937_RS03510 0.56 -1.0 773,571 + -0.4 773,571 + +0.6 773,571 + +0.3 773,572 - +0.5 773,572 - -0.2 773,600 + -0.3 773,622 - -0.5 773,876 + DDA3937_RS03515 0.31 -1.2 773,912 + DDA3937_RS03515 0.36 +0.4 773,912 + DDA3937_RS03515 0.36 -0.1 773,912 + DDA3937_RS03515 0.36 +0.2 773,928 + DDA3937_RS03515 0.38 -0.6 773,928 + DDA3937_RS03515 0.38 -1.1 773,928 + DDA3937_RS03515 0.38 -0.2 773,977 - DDA3937_RS03515 0.43 -0.1 774,069 + DDA3937_RS03515 0.54 -0.1 774,069 + DDA3937_RS03515 0.54 -0.9 774,070 - DDA3937_RS03515 0.54 -1.0 774,116 + DDA3937_RS03515 0.59 -0.8 774,116 + DDA3937_RS03515 0.59 +0.1 774,117 - DDA3937_RS03515 0.59 -0.8 774,117 - DDA3937_RS03515 0.59 -1.2 774,138 - DDA3937_RS03515 0.62 +0.0 774,138 - DDA3937_RS03515 0.62 -0.1 774,257 + DDA3937_RS03515 0.76 -0.3 774,312 + DDA3937_RS03515 0.82 +0.8 774,312 + DDA3937_RS03515 0.82 -1.2 774,312 + DDA3937_RS03515 0.82 +0.3 774,313 - DDA3937_RS03515 0.82 -0.0 774,313 - DDA3937_RS03515 0.82 -1.5 774,313 - DDA3937_RS03515 0.82 -0.5 774,372 + +2.3 774,372 + DDA3937_RS03515 0.89 -0.5 774,372 + DDA3937_RS03515 0.89 -1.3 774,372 + DDA3937_RS03515 0.89 -0.9 774,372 + DDA3937_RS03515 0.89 +0.2 774,372 + DDA3937_RS03515 0.89 -1.1 774,373 - DDA3937_RS03515 0.89 -1.2 774,373 - DDA3937_RS03515 0.89 -1.2 774,477 - -1.2 774,477 - +0.4 774,477 - -1.2 774,573 + -0.8 774,573 + +0.0 774,573 + -0.7 774,573 + -0.3 774,573 + -0.5 774,574 - -1.5 774,574 - +0.5 774,574 - -1.3 774,574 - -0.6 774,574 - -0.0 774,574 - -0.8 774,580 + -0.5 774,581 - -0.0 774,581 - -1.9 774,694 + DDA3937_RS03520 0.24 +0.3 774,695 - DDA3937_RS03520 0.24 -1.5 774,695 - DDA3937_RS03520 0.24 -0.8 774,695 - DDA3937_RS03520 0.24 -0.5 774,760 + DDA3937_RS03520 0.32 -1.3 774,761 - DDA3937_RS03520 0.32 +1.1 774,830 - DDA3937_RS03520 0.41 +0.7 774,866 + DDA3937_RS03520 0.46 -0.3 774,871 + DDA3937_RS03520 0.47 +0.3 775,083 + DDA3937_RS03520 0.74 -0.1 775,083 + DDA3937_RS03520 0.74 -2.1 775,084 - DDA3937_RS03520 0.74 -0.4 775,084 - DDA3937_RS03520 0.74 -0.8 775,084 - DDA3937_RS03520 0.74 +0.1 775,149 + DDA3937_RS03520 0.83 -0.9 775,150 - DDA3937_RS03520 0.83 -0.3 775,158 - DDA3937_RS03520 0.84 -0.0 775,196 + DDA3937_RS03520 0.89 -0.4 775,197 - +0.4 775,214 + -0.3 775,215 - -0.8 775,215 - +0.0 775,245 + +0.5 775,245 + +0.3 775,246 - -0.2 775,246 - -0.4 775,282 - -1.3 775,310 + -1.2 775,310 + -0.3 775,310 + +0.2 775,310 + -0.4 775,311 - -2.3 775,311 - -0.4 775,311 - -0.7 775,313 + -0.6 775,314 - -0.0 775,348 - +0.1
Or see this region's nucleotide sequence