Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03420

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS03415 and DDA3937_RS03420 are separated by 9 nucleotidesDDA3937_RS03420 and DDA3937_RS03425 are separated by 68 nucleotides DDA3937_RS03415: DDA3937_RS03415 - NAD-dependent epimerase/dehydratase family protein, at 747,049 to 748,023 _RS03415 DDA3937_RS03420: DDA3937_RS03420 - sugar transferase, at 748,033 to 748,581 _RS03420 DDA3937_RS03425: DDA3937_RS03425 - ABC transporter substrate-binding protein, at 748,650 to 749,972 _RS03425 Position (kb) 748 749Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 747.041 kb on + strandat 747.056 kb on + strandat 747.057 kb on - strandat 747.060 kb on - strandat 747.060 kb on - strandat 747.120 kb on + strandat 747.120 kb on + strandat 747.121 kb on - strandat 747.121 kb on - strandat 747.121 kb on - strandat 747.121 kb on - strandat 747.121 kb on - strandat 747.122 kb on + strandat 747.123 kb on - strandat 747.123 kb on - strandat 747.123 kb on - strandat 747.472 kb on + strand, within DDA3937_RS03415at 747.472 kb on + strand, within DDA3937_RS03415at 747.472 kb on + strand, within DDA3937_RS03415at 747.472 kb on + strand, within DDA3937_RS03415at 747.473 kb on - strand, within DDA3937_RS03415at 747.473 kb on - strand, within DDA3937_RS03415at 747.531 kb on + strand, within DDA3937_RS03415at 747.532 kb on - strand, within DDA3937_RS03415at 747.551 kb on - strand, within DDA3937_RS03415at 747.551 kb on - strand, within DDA3937_RS03415at 747.683 kb on + strand, within DDA3937_RS03415at 747.683 kb on + strand, within DDA3937_RS03415at 747.684 kb on - strand, within DDA3937_RS03415at 747.940 kb on + strandat 747.940 kb on + strandat 748.030 kb on - strandat 748.032 kb on + strandat 748.032 kb on + strandat 748.032 kb on + strandat 748.033 kb on - strandat 748.033 kb on - strandat 748.050 kb on + strandat 748.052 kb on + strandat 748.052 kb on + strandat 748.052 kb on + strandat 748.052 kb on + strandat 748.052 kb on + strandat 748.052 kb on + strandat 748.052 kb on + strandat 748.052 kb on + strandat 748.052 kb on + strandat 748.053 kb on - strandat 748.053 kb on - strandat 748.053 kb on - strandat 748.053 kb on - strandat 748.053 kb on - strandat 748.053 kb on - strandat 748.055 kb on + strandat 748.055 kb on + strandat 748.055 kb on + strandat 748.056 kb on - strandat 748.105 kb on + strand, within DDA3937_RS03420at 748.105 kb on + strand, within DDA3937_RS03420at 748.106 kb on - strand, within DDA3937_RS03420at 748.284 kb on + strand, within DDA3937_RS03420at 748.284 kb on + strand, within DDA3937_RS03420at 748.285 kb on - strand, within DDA3937_RS03420at 748.311 kb on + strand, within DDA3937_RS03420at 748.312 kb on - strand, within DDA3937_RS03420at 748.312 kb on - strand, within DDA3937_RS03420at 748.462 kb on - strand, within DDA3937_RS03420at 748.495 kb on - strand, within DDA3937_RS03420at 748.522 kb on + strand, within DDA3937_RS03420at 748.522 kb on + strand, within DDA3937_RS03420at 748.531 kb on + strandat 748.574 kb on + strandat 748.574 kb on + strandat 748.574 kb on + strandat 748.623 kb on + strandat 748.623 kb on + strandat 748.623 kb on + strandat 748.623 kb on + strandat 748.624 kb on - strandat 748.624 kb on - strandat 748.624 kb on - strandat 748.624 kb on - strandat 748.624 kb on - strandat 748.624 kb on - strandat 748.624 kb on - strandat 748.627 kb on + strandat 748.627 kb on + strandat 748.627 kb on + strandat 748.627 kb on + strandat 748.627 kb on + strandat 748.628 kb on - strandat 748.628 kb on - strandat 748.628 kb on - strandat 748.628 kb on - strandat 748.684 kb on + strandat 748.684 kb on + strandat 748.685 kb on - strandat 748.685 kb on - strandat 748.790 kb on + strand, within DDA3937_RS03425at 748.791 kb on - strand, within DDA3937_RS03425at 748.791 kb on - strand, within DDA3937_RS03425at 748.810 kb on + strand, within DDA3937_RS03425at 748.811 kb on - strand, within DDA3937_RS03425at 748.811 kb on - strand, within DDA3937_RS03425at 748.834 kb on + strand, within DDA3937_RS03425at 748.834 kb on + strand, within DDA3937_RS03425at 748.835 kb on - strand, within DDA3937_RS03425at 748.882 kb on + strand, within DDA3937_RS03425at 748.882 kb on + strand, within DDA3937_RS03425at 748.882 kb on + strand, within DDA3937_RS03425at 748.906 kb on + strand, within DDA3937_RS03425at 748.907 kb on - strand, within DDA3937_RS03425at 748.930 kb on + strand, within DDA3937_RS03425at 748.979 kb on - strand, within DDA3937_RS03425at 748.979 kb on - strand, within DDA3937_RS03425at 749.126 kb on + strand, within DDA3937_RS03425at 749.126 kb on + strand, within DDA3937_RS03425at 749.127 kb on - strand, within DDA3937_RS03425at 749.208 kb on + strand, within DDA3937_RS03425at 749.287 kb on + strand, within DDA3937_RS03425at 749.287 kb on + strand, within DDA3937_RS03425at 749.287 kb on + strand, within DDA3937_RS03425at 749.288 kb on - strand, within DDA3937_RS03425at 749.288 kb on - strand, within DDA3937_RS03425at 749.290 kb on + strand, within DDA3937_RS03425at 749.291 kb on - strand, within DDA3937_RS03425at 749.320 kb on + strand, within DDA3937_RS03425at 749.320 kb on + strand, within DDA3937_RS03425at 749.321 kb on - strand, within DDA3937_RS03425at 749.506 kb on + strand, within DDA3937_RS03425at 749.506 kb on + strand, within DDA3937_RS03425at 749.506 kb on + strand, within DDA3937_RS03425at 749.507 kb on - strand, within DDA3937_RS03425at 749.507 kb on - strand, within DDA3937_RS03425at 749.507 kb on - strand, within DDA3937_RS03425at 749.509 kb on + strand, within DDA3937_RS03425at 749.509 kb on + strand, within DDA3937_RS03425at 749.545 kb on + strand, within DDA3937_RS03425

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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747,041 + +0.6
747,056 + -0.6
747,057 - +0.4
747,060 - -1.6
747,060 - -1.2
747,120 + -1.1
747,120 + -0.7
747,121 - -0.6
747,121 - +1.6
747,121 - -0.4
747,121 - +0.3
747,121 - +0.2
747,122 + -0.4
747,123 - -1.8
747,123 - -0.8
747,123 - -0.4
747,472 + DDA3937_RS03415 0.43 -0.0
747,472 + DDA3937_RS03415 0.43 -0.4
747,472 + DDA3937_RS03415 0.43 -0.2
747,472 + DDA3937_RS03415 0.43 +0.1
747,473 - DDA3937_RS03415 0.43 -0.2
747,473 - DDA3937_RS03415 0.43 -0.2
747,531 + DDA3937_RS03415 0.49 +0.1
747,532 - DDA3937_RS03415 0.50 +0.0
747,551 - DDA3937_RS03415 0.51 +0.4
747,551 - DDA3937_RS03415 0.51 -0.4
747,683 + DDA3937_RS03415 0.65 +0.8
747,683 + DDA3937_RS03415 0.65 +0.7
747,684 - DDA3937_RS03415 0.65 +0.8
747,940 + -0.5
747,940 + -0.8
748,030 - -1.2
748,032 + -1.6
748,032 + -2.9
748,032 + -0.2
748,033 - -0.8
748,033 - +0.5
748,050 + -1.2
748,052 + -1.2
748,052 + -0.8
748,052 + -0.2
748,052 + -1.8
748,052 + -0.2
748,052 + -1.0
748,052 + -0.9
748,052 + +1.6
748,052 + -1.3
748,053 - +1.6
748,053 - -0.2
748,053 - +0.5
748,053 - +3.2
748,053 - -0.6
748,053 - -1.0
748,055 + +0.1
748,055 + -0.5
748,055 + -1.5
748,056 - -0.4
748,105 + DDA3937_RS03420 0.13 -0.4
748,105 + DDA3937_RS03420 0.13 -0.8
748,106 - DDA3937_RS03420 0.13 +0.8
748,284 + DDA3937_RS03420 0.46 -0.0
748,284 + DDA3937_RS03420 0.46 -0.2
748,285 - DDA3937_RS03420 0.46 +0.4
748,311 + DDA3937_RS03420 0.51 -0.8
748,312 - DDA3937_RS03420 0.51 -0.5
748,312 - DDA3937_RS03420 0.51 -0.8
748,462 - DDA3937_RS03420 0.78 -0.3
748,495 - DDA3937_RS03420 0.84 -0.2
748,522 + DDA3937_RS03420 0.89 -1.5
748,522 + DDA3937_RS03420 0.89 -1.8
748,531 + -0.3
748,574 + -1.4
748,574 + -0.2
748,574 + -0.9
748,623 + +0.5
748,623 + -0.4
748,623 + -0.8
748,623 + -0.2
748,624 - -0.1
748,624 - +1.1
748,624 - +0.8
748,624 - -1.2
748,624 - -1.0
748,624 - +0.4
748,624 - -0.2
748,627 + -1.0
748,627 + -0.1
748,627 + -0.7
748,627 + -0.9
748,627 + -0.4
748,628 - +0.0
748,628 - -0.5
748,628 - +0.6
748,628 - +0.8
748,684 + -1.2
748,684 + -0.9
748,685 - +0.2
748,685 - -1.4
748,790 + DDA3937_RS03425 0.11 -1.3
748,791 - DDA3937_RS03425 0.11 -0.4
748,791 - DDA3937_RS03425 0.11 -0.3
748,810 + DDA3937_RS03425 0.12 +0.8
748,811 - DDA3937_RS03425 0.12 -0.7
748,811 - DDA3937_RS03425 0.12 -0.5
748,834 + DDA3937_RS03425 0.14 -1.3
748,834 + DDA3937_RS03425 0.14 -1.5
748,835 - DDA3937_RS03425 0.14 +0.9
748,882 + DDA3937_RS03425 0.18 -0.2
748,882 + DDA3937_RS03425 0.18 -2.5
748,882 + DDA3937_RS03425 0.18 -0.2
748,906 + DDA3937_RS03425 0.19 -0.2
748,907 - DDA3937_RS03425 0.19 -0.5
748,930 + DDA3937_RS03425 0.21 +1.3
748,979 - DDA3937_RS03425 0.25 -0.6
748,979 - DDA3937_RS03425 0.25 +0.8
749,126 + DDA3937_RS03425 0.36 +0.3
749,126 + DDA3937_RS03425 0.36 -1.0
749,127 - DDA3937_RS03425 0.36 -2.0
749,208 + DDA3937_RS03425 0.42 +0.1
749,287 + DDA3937_RS03425 0.48 -0.5
749,287 + DDA3937_RS03425 0.48 -0.6
749,287 + DDA3937_RS03425 0.48 +0.2
749,288 - DDA3937_RS03425 0.48 -0.8
749,288 - DDA3937_RS03425 0.48 -0.9
749,290 + DDA3937_RS03425 0.48 -0.6
749,291 - DDA3937_RS03425 0.48 -1.5
749,320 + DDA3937_RS03425 0.51 -0.2
749,320 + DDA3937_RS03425 0.51 -0.1
749,321 - DDA3937_RS03425 0.51 -0.9
749,506 + DDA3937_RS03425 0.65 -0.3
749,506 + DDA3937_RS03425 0.65 +1.8
749,506 + DDA3937_RS03425 0.65 -1.0
749,507 - DDA3937_RS03425 0.65 +0.0
749,507 - DDA3937_RS03425 0.65 -0.5
749,507 - DDA3937_RS03425 0.65 +0.1
749,509 + DDA3937_RS03425 0.65 -0.1
749,509 + DDA3937_RS03425 0.65 -0.1
749,545 + DDA3937_RS03425 0.68 -0.0

Or see this region's nucleotide sequence