Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03395 and DDA3937_RS03400 are separated by 44 nucleotides DDA3937_RS03400 and DDA3937_RS03405 are separated by 660 nucleotides DDA3937_RS03405 and DDA3937_RS03410 are separated by 108 nucleotides
DDA3937_RS03395: DDA3937_RS03395 - methyltransferase, at 743,005 to 743,583
_RS03395
DDA3937_RS03400: DDA3937_RS03400 - hypothetical protein, at 743,628 to 743,852
_RS03400
DDA3937_RS03405: DDA3937_RS03405 - helix-turn-helix transcriptional regulator, at 744,513 to 744,890
_RS03405
DDA3937_RS03410: DDA3937_RS03410 - polysaccharide biosynthesis protein, at 744,999 to 746,894
_RS03410
Position (kb) 744
745 Strain fitness (log2 ratio) -2
-1
0
1
2 at 743.524 kb on - strand at 743.557 kb on + strand at 743.597 kb on + strand at 743.598 kb on - strand at 743.613 kb on - strand at 743.635 kb on + strand at 743.636 kb on - strand at 743.636 kb on - strand at 743.639 kb on + strand at 743.640 kb on - strand at 743.644 kb on + strand at 743.646 kb on + strand at 743.646 kb on + strand at 743.646 kb on + strand at 743.647 kb on - strand at 743.647 kb on - strand at 743.723 kb on + strand, within DDA3937_RS03400 at 743.771 kb on - strand, within DDA3937_RS03400 at 743.771 kb on - strand, within DDA3937_RS03400 at 743.771 kb on - strand, within DDA3937_RS03400 at 743.868 kb on + strand at 743.949 kb on - strand at 743.972 kb on - strand at 743.974 kb on + strand at 743.975 kb on - strand at 743.975 kb on - strand at 744.050 kb on + strand at 744.051 kb on - strand at 744.051 kb on - strand at 744.203 kb on + strand at 744.293 kb on + strand at 744.294 kb on - strand at 744.308 kb on + strand at 744.309 kb on - strand at 744.318 kb on + strand at 744.318 kb on + strand at 744.319 kb on - strand at 744.319 kb on - strand at 744.319 kb on - strand at 744.369 kb on + strand at 744.370 kb on - strand at 744.370 kb on - strand at 744.400 kb on + strand at 744.400 kb on + strand at 744.400 kb on + strand at 744.401 kb on - strand at 744.424 kb on - strand at 744.450 kb on + strand at 744.489 kb on - strand at 744.531 kb on + strand at 744.531 kb on + strand at 744.531 kb on + strand at 744.532 kb on - strand at 744.532 kb on - strand at 744.532 kb on - strand at 744.532 kb on - strand at 744.532 kb on - strand at 744.555 kb on - strand, within DDA3937_RS03405 at 744.555 kb on - strand, within DDA3937_RS03405 at 744.555 kb on - strand, within DDA3937_RS03405 at 744.578 kb on + strand, within DDA3937_RS03405 at 744.629 kb on + strand, within DDA3937_RS03405 at 744.732 kb on - strand, within DDA3937_RS03405 at 744.753 kb on + strand, within DDA3937_RS03405 at 744.754 kb on - strand, within DDA3937_RS03405 at 744.754 kb on - strand, within DDA3937_RS03405 at 744.762 kb on - strand, within DDA3937_RS03405 at 744.794 kb on - strand, within DDA3937_RS03405 at 744.794 kb on - strand, within DDA3937_RS03405 at 744.856 kb on - strand at 744.866 kb on + strand at 744.866 kb on + strand at 744.867 kb on - strand at 744.867 kb on - strand at 744.867 kb on - strand at 744.867 kb on - strand at 744.867 kb on - strand at 744.888 kb on + strand at 744.889 kb on - strand at 744.889 kb on - strand at 744.975 kb on + strand at 744.975 kb on + strand at 744.976 kb on - strand at 744.976 kb on - strand at 744.976 kb on - strand at 744.976 kb on - strand at 744.976 kb on - strand at 744.996 kb on + strand at 744.996 kb on + strand at 744.997 kb on - strand at 745.026 kb on - strand at 745.045 kb on + strand at 745.068 kb on + strand at 745.068 kb on + strand at 745.068 kb on + strand at 745.069 kb on - strand at 745.093 kb on + strand at 745.094 kb on - strand at 745.094 kb on - strand at 745.094 kb on - strand at 745.094 kb on - strand at 745.094 kb on - strand at 745.094 kb on - strand at 745.122 kb on + strand at 745.122 kb on + strand at 745.122 kb on + strand at 745.122 kb on + strand at 745.123 kb on - strand at 745.123 kb on - strand at 745.123 kb on - strand at 745.126 kb on - strand at 745.126 kb on - strand at 745.126 kb on - strand at 745.149 kb on + strand at 745.216 kb on - strand, within DDA3937_RS03410 at 745.259 kb on + strand, within DDA3937_RS03410 at 745.260 kb on - strand, within DDA3937_RS03410 at 745.260 kb on - strand, within DDA3937_RS03410 at 745.263 kb on - strand, within DDA3937_RS03410 at 745.297 kb on + strand, within DDA3937_RS03410 at 745.298 kb on - strand, within DDA3937_RS03410 at 745.336 kb on - strand, within DDA3937_RS03410 at 745.434 kb on + strand, within DDA3937_RS03410 at 745.448 kb on - strand, within DDA3937_RS03410 at 745.536 kb on + strand, within DDA3937_RS03410 at 745.536 kb on + strand, within DDA3937_RS03410 at 745.536 kb on + strand, within DDA3937_RS03410 at 745.537 kb on - strand, within DDA3937_RS03410 at 745.537 kb on - strand, within DDA3937_RS03410 at 745.537 kb on - strand, within DDA3937_RS03410 at 745.537 kb on - strand, within DDA3937_RS03410 at 745.537 kb on - strand, within DDA3937_RS03410 at 745.539 kb on + strand, within DDA3937_RS03410 at 745.539 kb on + strand, within DDA3937_RS03410 at 745.539 kb on + strand, within DDA3937_RS03410 at 745.539 kb on + strand, within DDA3937_RS03410 at 745.539 kb on + strand, within DDA3937_RS03410 at 745.539 kb on + strand, within DDA3937_RS03410 at 745.540 kb on - strand, within DDA3937_RS03410 at 745.540 kb on - strand, within DDA3937_RS03410 at 745.540 kb on - strand at 745.540 kb on - strand, within DDA3937_RS03410 at 745.540 kb on - strand, within DDA3937_RS03410 at 745.540 kb on - strand, within DDA3937_RS03410 at 745.540 kb on - strand, within DDA3937_RS03410 at 745.637 kb on + strand, within DDA3937_RS03410 at 745.638 kb on - strand, within DDA3937_RS03410 at 745.638 kb on - strand, within DDA3937_RS03410 at 745.638 kb on - strand, within DDA3937_RS03410 at 745.638 kb on - strand, within DDA3937_RS03410 at 745.687 kb on - strand, within DDA3937_RS03410 at 745.745 kb on + strand, within DDA3937_RS03410 at 745.746 kb on - strand, within DDA3937_RS03410 at 745.786 kb on + strand, within DDA3937_RS03410 at 745.786 kb on + strand, within DDA3937_RS03410 at 745.786 kb on + strand, within DDA3937_RS03410 at 745.787 kb on - strand, within DDA3937_RS03410 at 745.787 kb on - strand, within DDA3937_RS03410 at 745.787 kb on - strand, within DDA3937_RS03410 at 745.787 kb on - strand, within DDA3937_RS03410 at 745.801 kb on + strand, within DDA3937_RS03410 at 745.802 kb on - strand, within DDA3937_RS03410 at 745.802 kb on - strand, within DDA3937_RS03410 at 745.802 kb on - strand, within DDA3937_RS03410 at 745.812 kb on + strand, within DDA3937_RS03410 at 745.812 kb on + strand, within DDA3937_RS03410 at 745.819 kb on + strand, within DDA3937_RS03410 at 745.819 kb on + strand, within DDA3937_RS03410 at 745.819 kb on + strand, within DDA3937_RS03410 at 745.887 kb on - strand, within DDA3937_RS03410
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 743,524 - -1.2 743,557 + -0.7 743,597 + +0.3 743,598 - -0.2 743,613 - -0.2 743,635 + +0.3 743,636 - +0.0 743,636 - +0.1 743,639 + -0.5 743,640 - -0.3 743,644 + -0.2 743,646 + +0.2 743,646 + -1.5 743,646 + -0.7 743,647 - -0.3 743,647 - +0.1 743,723 + DDA3937_RS03400 0.42 -1.5 743,771 - DDA3937_RS03400 0.64 -1.2 743,771 - DDA3937_RS03400 0.64 +0.0 743,771 - DDA3937_RS03400 0.64 +0.7 743,868 + -0.9 743,949 - -0.1 743,972 - -0.3 743,974 + -0.5 743,975 - -0.6 743,975 - +0.1 744,050 + -0.9 744,051 - -0.7 744,051 - -0.3 744,203 + -0.2 744,293 + +0.5 744,294 - -0.0 744,308 + -0.3 744,309 - -0.2 744,318 + -0.3 744,318 + -0.2 744,319 - -0.8 744,319 - +0.3 744,319 - +0.1 744,369 + +0.1 744,370 - -1.5 744,370 - -1.1 744,400 + -0.3 744,400 + -0.5 744,400 + -0.4 744,401 - -1.2 744,424 - +0.4 744,450 + +1.3 744,489 - +0.0 744,531 + +1.6 744,531 + -0.8 744,531 + -2.0 744,532 - +0.3 744,532 - -0.5 744,532 - +0.3 744,532 - -0.1 744,532 - -2.2 744,555 - DDA3937_RS03405 0.11 -1.0 744,555 - DDA3937_RS03405 0.11 -0.5 744,555 - DDA3937_RS03405 0.11 -0.2 744,578 + DDA3937_RS03405 0.17 -0.7 744,629 + DDA3937_RS03405 0.31 -1.5 744,732 - DDA3937_RS03405 0.58 -1.7 744,753 + DDA3937_RS03405 0.63 -2.2 744,754 - DDA3937_RS03405 0.64 -0.5 744,754 - DDA3937_RS03405 0.64 -0.8 744,762 - DDA3937_RS03405 0.66 -1.1 744,794 - DDA3937_RS03405 0.74 +0.5 744,794 - DDA3937_RS03405 0.74 -0.5 744,856 - -1.2 744,866 + +0.5 744,866 + +1.1 744,867 - +0.4 744,867 - -0.5 744,867 - -1.5 744,867 - -0.9 744,867 - -0.8 744,888 + -0.2 744,889 - +0.3 744,889 - +0.5 744,975 + -0.3 744,975 + -0.9 744,976 - -0.4 744,976 - -0.9 744,976 - -1.3 744,976 - -0.4 744,976 - +0.8 744,996 + -1.4 744,996 + -1.2 744,997 - -0.5 745,026 - -0.4 745,045 + +0.7 745,068 + +0.1 745,068 + -0.2 745,068 + -0.2 745,069 - -0.2 745,093 + -1.5 745,094 - +0.5 745,094 - +2.4 745,094 - +0.2 745,094 - +0.5 745,094 - +1.2 745,094 - -0.2 745,122 + +0.7 745,122 + +0.4 745,122 + -0.8 745,122 + +0.2 745,123 - -0.2 745,123 - -1.7 745,123 - +1.8 745,126 - +0.8 745,126 - -0.3 745,126 - -0.6 745,149 + -0.3 745,216 - DDA3937_RS03410 0.11 -0.1 745,259 + DDA3937_RS03410 0.14 +0.8 745,260 - DDA3937_RS03410 0.14 -0.7 745,260 - DDA3937_RS03410 0.14 -0.0 745,263 - DDA3937_RS03410 0.14 +0.5 745,297 + DDA3937_RS03410 0.16 -0.8 745,298 - DDA3937_RS03410 0.16 -0.8 745,336 - DDA3937_RS03410 0.18 +0.4 745,434 + DDA3937_RS03410 0.23 -0.5 745,448 - DDA3937_RS03410 0.24 -0.6 745,536 + DDA3937_RS03410 0.28 -0.8 745,536 + DDA3937_RS03410 0.28 -1.6 745,536 + DDA3937_RS03410 0.28 +0.8 745,537 - DDA3937_RS03410 0.28 +0.2 745,537 - DDA3937_RS03410 0.28 -0.0 745,537 - DDA3937_RS03410 0.28 +0.8 745,537 - DDA3937_RS03410 0.28 -0.7 745,537 - DDA3937_RS03410 0.28 -0.8 745,539 + DDA3937_RS03410 0.28 -0.1 745,539 + DDA3937_RS03410 0.28 -0.4 745,539 + DDA3937_RS03410 0.28 -0.3 745,539 + DDA3937_RS03410 0.28 -0.0 745,539 + DDA3937_RS03410 0.28 -0.9 745,539 + DDA3937_RS03410 0.28 +0.6 745,540 - DDA3937_RS03410 0.29 -0.3 745,540 - DDA3937_RS03410 0.29 +0.2 745,540 - +0.8 745,540 - DDA3937_RS03410 0.29 -0.2 745,540 - DDA3937_RS03410 0.29 -0.1 745,540 - DDA3937_RS03410 0.29 +0.2 745,540 - DDA3937_RS03410 0.29 +0.8 745,637 + DDA3937_RS03410 0.34 -0.4 745,638 - DDA3937_RS03410 0.34 -0.0 745,638 - DDA3937_RS03410 0.34 +0.1 745,638 - DDA3937_RS03410 0.34 -0.3 745,638 - DDA3937_RS03410 0.34 -0.3 745,687 - DDA3937_RS03410 0.36 -0.3 745,745 + DDA3937_RS03410 0.39 +0.3 745,746 - DDA3937_RS03410 0.39 +0.2 745,786 + DDA3937_RS03410 0.42 +0.3 745,786 + DDA3937_RS03410 0.42 -0.5 745,786 + DDA3937_RS03410 0.42 +0.2 745,787 - DDA3937_RS03410 0.42 +0.7 745,787 - DDA3937_RS03410 0.42 -0.9 745,787 - DDA3937_RS03410 0.42 -0.7 745,787 - DDA3937_RS03410 0.42 -1.2 745,801 + DDA3937_RS03410 0.42 -1.8 745,802 - DDA3937_RS03410 0.42 +1.1 745,802 - DDA3937_RS03410 0.42 +0.2 745,802 - DDA3937_RS03410 0.42 +0.8 745,812 + DDA3937_RS03410 0.43 +1.5 745,812 + DDA3937_RS03410 0.43 -0.9 745,819 + DDA3937_RS03410 0.43 -0.3 745,819 + DDA3937_RS03410 0.43 +0.6 745,819 + DDA3937_RS03410 0.43 -0.4 745,887 - DDA3937_RS03410 0.47 -0.4
Or see this region's nucleotide sequence